Gene: RNU4-25P (RNA, U4 small nuclear 25, pseudogene) Homo sapiens |
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Analyze |
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Symbol: |
RNU4-25P |
Name: |
RNA, U4 small nuclear 25, pseudogene |
RGD ID: |
10399694 |
HGNC Page |
HGNC:46961 |
Description: |
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Type: |
pseudo (Ensembl: snRNA)
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RefSeq Status: |
INFERRED |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Related Functional Gene: |
RNU4-1
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Latest Assembly: |
GRCh38 - Human Genome Assembly GRCh38 |
Position: |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 8 | 128,010,382 - 128,010,611 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 8 | 128,010,382 - 128,010,611 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 8 | 129,022,628 - 129,022,857 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 8 | q24.21 | NCBI | | | | | CHM1_1 | 8 | 129,062,926 - 129,063,155 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 8 | 129,138,233 - 129,138,462 (-) | NCBI | | T2T-CHM13v2.0 | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
RNU4-25P (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 8 | 128,010,382 - 128,010,611 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 8 | 128,010,382 - 128,010,611 (-) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 8 | 129,022,628 - 129,022,857 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Cytogenetic Map | 8 | q24.21 | NCBI | | | | | CHM1_1 | 8 | 129,062,926 - 129,063,155 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 8 | 129,138,233 - 129,138,462 (-) | NCBI | | T2T-CHM13v2.0 | | |
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LOC120094543 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 8 | 9,465,265 - 9,465,333 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 8 | 1,180,290 - 1,180,379 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 8 | 1,180,290 - 1,180,379 (-) | NCBI | | mRatBN7.2 Ensembl | | | mRatBN7.2 Ensembl | 8 | 1,180,290 - 1,180,379 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 Ensembl | 8 | 1,160,579 - 1,160,668 (-) | NCBI | Rnor6.0 | | rn6 | Rnor6.0 | Cytogenetic Map | 8 | q11 | NCBI | | | | |
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LOC119866261 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Dog10K_Boxer_Tasha | 26 | 16,175,448 - 16,175,560 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 26 | 16,438,624 - 16,438,736 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 26 | 16,438,624 - 16,438,736 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 26 | 16,399,636 - 16,399,748 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 26 | 16,476,765 - 16,476,877 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 26 | 16,517,746 - 16,517,858 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 142 | Count of miRNA genes: | 134 | Interacting mature miRNAs: | 135 | Transcripts: | ENST00000410569 | Prediction methods: | Microtar, Miranda, Rnahybrid | Result types: | miRGate_prediction | |
Expression
RNA-SEQ Expression
High: > 1000 TPM value
Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM
Below Cutoff: < 0.5 TPM
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alimentary part of gastrointestinal system |
circulatory system |
endocrine system |
exocrine system |
hemolymphoid system |
hepatobiliary system |
integumental system |
musculoskeletal system |
nervous system |
renal system |
reproductive system |
respiratory system |
sensory system |
visual system |
adipose tissue |
appendage |
entire extraembryonic component |
pharyngeal arch |
High |
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Medium |
3
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2
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2
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1
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4
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2
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2
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21
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6
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2
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4
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1
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1
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1
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Low |
108
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58
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49
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24
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321
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12
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274
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37
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63
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32
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253
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120
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16
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75
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99
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1
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Below cutoff |
278
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196
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221
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79
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218
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34
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633
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156
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156
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37
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318
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257
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47
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227
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326
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3
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Sequence
RefSeq Acc Id: |
ENST00000410569 |
Type: |
CODING |
Position: |
Human Assembly | Chr | Position (strand) | Source |
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GRCh38.p14 Ensembl | 8 | 128,010,382 - 128,010,611 (-) | Ensembl |
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Additional Information
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