RNA5SP376 (RNA, 5S ribosomal pseudogene 376) - Rat Genome Database

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Gene: RNA5SP376 (RNA, 5S ribosomal pseudogene 376) Homo sapiens
Analyze
Symbol: RNA5SP376
Name: RNA, 5S ribosomal pseudogene 376
RGD ID: 10399545
HGNC Page HGNC:43276
Description:
Type: pseudo (Ensembl: rRNA_pseudogene)
RefSeq Status: INFERRED
Previously known as: RN5S376
Related Functional Gene: RNA5S1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812131,299,655 - 131,299,751 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12131,299,640 - 131,299,751 (-)EnsemblGRCh38hg38GRCh38
GRCh3712131,784,200 - 131,784,296 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q24.33NCBI
CHM1_112131,605,283 - 131,605,378 (-)NCBICHM1_1
T2T-CHM13v2.012131,341,394 - 131,341,489 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:270
Count of miRNA genes:236
Interacting mature miRNAs:250
Transcripts:ENST00000390949
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 3 2 6 1 3 4 6
Below cutoff 16 17 9 8 28 21 26 12 8 6 19

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000390949
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl12131,299,640 - 131,299,751 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNA5SP376 COSMIC
Ensembl Genes ENSG00000212251 Ensembl, ENTREZGENE
GTEx ENSG00000212251 GTEx
HGNC ID HGNC:43276 ENTREZGENE
Human Proteome Map RNA5SP376 Human Proteome Map
NCBI Gene RNA5SP376 ENTREZGENE