RNU6-606P (RNA, U6 small nuclear 606, pseudogene) - Rat Genome Database

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Gene: RNU6-606P (RNA, U6 small nuclear 606, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-606P
Name: RNA, U6 small nuclear 606, pseudogene
RGD ID: 10399314
HGNC Page HGNC:47569
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38587,299,687 - 87,299,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl587,299,687 - 87,299,797 (-)EnsemblGRCh38hg38GRCh38
GRCh37586,595,504 - 86,595,614 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q14.3NCBI
CHM1_1586,028,535 - 86,028,645 (-)NCBICHM1_1
T2T-CHM13v2.0587,780,791 - 87,780,901 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-606P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38587,299,687 - 87,299,797 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl587,299,687 - 87,299,797 (-)EnsemblGRCh38hg38GRCh38
GRCh37586,595,504 - 86,595,614 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q14.3NCBI
CHM1_1586,028,535 - 86,028,645 (-)NCBICHM1_1
T2T-CHM13v2.0587,780,791 - 87,780,901 (-)NCBIT2T-CHM13v2.0
Gm23032
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39131,695,713 - 31,695,819 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl131,695,713 - 31,695,819 (-)EnsemblGRCm39 Ensembl
GRCm38131,656,632 - 31,656,738 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl131,656,632 - 31,656,738 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map1BNCBI
LOC120093299
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8620,669,485 - 20,669,588 (-)NCBIGRCr8
mRatBN7.2614,917,251 - 14,917,354 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl614,917,251 - 14,917,354 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map6q12NCBI

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:61
Interacting mature miRNAs:61
Transcripts:ENST00000384721
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 1
Low 88 76 65 24 190 21 182 55 175 40 88 88 3 32 114
Below cutoff 205 195 94 20 134 8 310 132 269 25 104 133 13 126 189 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384721
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl587,299,687 - 87,299,797 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-606P COSMIC
Ensembl Genes ENSG00000207452 Ensembl, ENTREZGENE
GTEx ENSG00000207452 GTEx
HGNC ID HGNC:47569 ENTREZGENE
Human Proteome Map RNU6-606P Human Proteome Map
NCBI Gene RNU6-606P ENTREZGENE