RNU4ATAC15P (RNA, U4atac small nuclear 15, pseudogene) - Rat Genome Database

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Gene: RNU4ATAC15P (RNA, U4atac small nuclear 15, pseudogene) Homo sapiens
Analyze
Symbol: RNU4ATAC15P
Name: RNA, U4atac small nuclear 15, pseudogene
RGD ID: 10399309
HGNC Page HGNC:46901
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU4ATAC  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38933,174,170 - 33,174,295 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl933,174,170 - 33,174,295 (+)EnsemblGRCh38hg38GRCh38
GRCh37933,174,168 - 33,174,293 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9p21.1NCBI
CHM1_1933,173,956 - 33,174,081 (+)NCBICHM1_1
T2T-CHM13v2.0933,192,843 - 33,192,968 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:193
Count of miRNA genes:185
Interacting mature miRNAs:193
Transcripts:ENST00000516415
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 11 11 18 11 44 11 31 2 21 4 37 13 1 10 18
Below cutoff 84 63 54 16 55 13 138 63 70 11 104 55 4 65 71

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000516415
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl933,174,170 - 33,174,295 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU4ATAC15P COSMIC
Ensembl Genes ENSG00000252224 Ensembl, ENTREZGENE
GTEx ENSG00000252224 GTEx
HGNC ID HGNC:46901 ENTREZGENE
Human Proteome Map RNU4ATAC15P Human Proteome Map
NCBI Gene RNU4ATAC15P ENTREZGENE