RNU6-649P (RNA, U6 small nuclear 649, pseudogene) - Rat Genome Database

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Gene: RNU6-649P (RNA, U6 small nuclear 649, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-649P
Name: RNA, U6 small nuclear 649, pseudogene
RGD ID: 10399230
HGNC Page HGNC:47612
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3824,945,277 - 4,945,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl24,945,277 - 4,945,383 (+)EnsemblGRCh38hg38GRCh38
GRCh3724,992,867 - 4,992,973 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p25.2NCBI
CHM1_124,922,222 - 4,922,328 (+)NCBICHM1_1
T2T-CHM13v2.024,963,908 - 4,964,014 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-649P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3824,945,277 - 4,945,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl24,945,277 - 4,945,383 (+)EnsemblGRCh38hg38GRCh38
GRCh3724,992,867 - 4,992,973 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2p25.2NCBI
CHM1_124,922,222 - 4,922,328 (+)NCBICHM1_1
T2T-CHM13v2.024,963,908 - 4,964,014 (+)NCBIT2T-CHM13v2.0
Gm23431
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39761,686,379 - 61,686,485 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl761,686,379 - 61,686,485 (-)EnsemblGRCm39 Ensembl
GRCm38762,036,631 - 62,036,737 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl762,036,631 - 62,036,737 (-)EnsemblGRCm38mm10GRCm38
Cytogenetic Map7CNCBI
LOC119874342
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1267,738,642 - 67,738,734 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01268,801,058 - 68,801,150 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1268,801,058 - 68,801,150 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11268,152,207 - 68,152,299 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01267,998,795 - 67,998,887 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01268,324,734 - 68,324,826 (+)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in RNU6-649P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:160
Count of miRNA genes:153
Interacting mature miRNAs:159
Transcripts:ENST00000384463
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue
High
Medium
Low 2 3 2 13 2
Below cutoff 1 3 2 1 2 1 2 2 1 21 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384463
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl24,945,277 - 4,945,383 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-649P COSMIC
Ensembl Genes ENSG00000207192 Ensembl, ENTREZGENE
GTEx ENSG00000207192 GTEx
HGNC ID HGNC:47612 ENTREZGENE
Human Proteome Map RNU6-649P Human Proteome Map
NCBI Gene RNU6-649P ENTREZGENE