RNU6-429P (RNA, U6 small nuclear 429, pseudogene) - Rat Genome Database

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Gene: RNU6-429P (RNA, U6 small nuclear 429, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-429P
Name: RNA, U6 small nuclear 429, pseudogene
RGD ID: 10399227
HGNC Page HGNC:47392
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
RGD Orthologs
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38511,027,200 - 11,027,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl511,027,200 - 11,027,307 (+)EnsemblGRCh38hg38GRCh38
GRCh37511,027,312 - 11,027,418 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5p15.2NCBI
CHM1_1511,027,178 - 11,027,284 (+)NCBICHM1_1
T2T-CHM13v2.0510,964,826 - 10,964,932 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
RNU6-429P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38511,027,200 - 11,027,306 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl511,027,200 - 11,027,307 (+)EnsemblGRCh38hg38GRCh38
GRCh37511,027,312 - 11,027,418 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5p15.2NCBI
CHM1_1511,027,178 - 11,027,284 (+)NCBICHM1_1
T2T-CHM13v2.0510,964,826 - 10,964,932 (+)NCBIT2T-CHM13v2.0
Gm26335
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39532,332,443 - 32,332,549 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl532,332,443 - 32,332,549 (+)EnsemblGRCm39 Ensembl
GRCm38532,175,099 - 32,175,205 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl532,175,099 - 32,175,205 (+)EnsemblGRCm38mm10GRCm38
Cytogenetic Map5B1NCBI
LOC120094053
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8793,260,083 - 93,260,189 (-)NCBIGRCr8
mRatBN7.2791,370,671 - 91,370,777 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl791,370,671 - 91,370,777 (-)EnsemblmRatBN7.2 Ensembl
Cytogenetic Map7q33NCBI
LOC119864346
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha189,855,141 - 9,855,244 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01810,055,471 - 10,055,574 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1810,055,471 - 10,055,574 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11810,032,445 - 10,032,548 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01810,008,271 - 10,008,374 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01810,117,262 - 10,117,365 (+)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:65
Count of miRNA genes:64
Interacting mature miRNAs:65
Transcripts:ENST00000384582
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1
Low 4 1 7 4 6 4 4 26 6 13 8 2
Below cutoff 9 13 11 5 5 3 10 10 70 10 4 2 2 7

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000384582
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl511,027,200 - 11,027,307 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-429P COSMIC
Ensembl Genes ENSG00000207312 Ensembl, ENTREZGENE
GTEx ENSG00000207312 GTEx
HGNC ID HGNC:47392 ENTREZGENE
Human Proteome Map RNU6-429P Human Proteome Map
NCBI Gene RNU6-429P ENTREZGENE