RNU6-1086P (RNA, U6 small nuclear 1086, pseudogene) - Rat Genome Database

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Gene: RNU6-1086P (RNA, U6 small nuclear 1086, pseudogene) Homo sapiens
Analyze
Symbol: RNU6-1086P
Name: RNA, U6 small nuclear 1086, pseudogene
RGD ID: 10399108
HGNC Page HGNC:48049
Description:
Type: pseudo (Ensembl: snRNA)
RefSeq Status: INFERRED
Related Functional Gene: RNU6-1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38827,679,836 - 27,679,935 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl827,679,836 - 27,679,935 (+)EnsemblGRCh38hg38GRCh38
GRCh37827,537,353 - 27,537,452 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8p21.1NCBI
CHM1_1827,739,237 - 27,739,336 (+)NCBICHM1_1
T2T-CHM13v2.0827,957,217 - 27,957,316 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:36
Count of miRNA genes:36
Interacting mature miRNAs:36
Transcripts:ENST00000410930
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 2
Low 41 31 41 5 17 4 69 30 136 23 91 57 1 11 45
Below cutoff 96 43 40 11 7 6 73 77 191 6 58 43 6 17 59 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000410930
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl827,679,836 - 27,679,935 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RNU6-1086P COSMIC
Ensembl Genes ENSG00000222862 Ensembl, ENTREZGENE
GTEx ENSG00000222862 GTEx
HGNC ID HGNC:48049 ENTREZGENE
Human Proteome Map RNU6-1086P Human Proteome Map
NCBI Gene RNU6-1086P ENTREZGENE