RN7SL806P (RNA, 7SL, cytoplasmic 806, pseudogene) - Rat Genome Database

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Gene: RN7SL806P (RNA, 7SL, cytoplasmic 806, pseudogene) Homo sapiens
Analyze
Symbol: RN7SL806P
Name: RNA, 7SL, cytoplasmic 806, pseudogene
RGD ID: 10399072
HGNC Page HGNC:46822
Description:
Type: pseudo (Ensembl: misc_RNA)
RefSeq Status: INFERRED
Related Functional Gene: RN7SL1  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38842,881,236 - 42,881,517 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl842,881,236 - 42,881,517 (+)EnsemblGRCh38hg38GRCh38
GRCh37842,736,379 - 42,736,660 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map8p11.21NCBI
CHM1_1842,783,285 - 42,783,566 (+)NCBICHM1_1
T2T-CHM13v2.0843,149,357 - 43,149,638 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:109
Interacting mature miRNAs:112
Transcripts:ENST00000467399
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 106 99 182 29 237 17 412 28 157 34 169 240 12 72 250 1
Below cutoff 755 738 617 163 432 80 1489 473 942 115 556 599 87 432 885 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000467399
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl842,881,236 - 42,881,517 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC RN7SL806P COSMIC
Ensembl Genes ENSG00000242719 Ensembl, ENTREZGENE
GTEx ENSG00000242719 GTEx
HGNC ID HGNC:46822 ENTREZGENE
Human Proteome Map RN7SL806P Human Proteome Map
NCBI Gene RN7SL806P ENTREZGENE