RN7SL376P (RNA, 7SL, cytoplasmic 376, pseudogene) - Rat Genome Database
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Summary
References
Genomics
miRNA Target Status (No longer
QTLs in Region (GRCh38)
Expression
RNA-SEQ Expression
Sequence
Nucleotide Sequences
Reference Sequences
Additional Information
External Database Links
Gene: RN7SL376P (RNA, 7SL, cytoplasmic 376, pseudogene) Homo sapiens
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Analyze
General
Array IDs
Symbol:
RN7SL376P
Name:
RNA, 7SL, cytoplasmic 376, pseudogene
RGD ID:
10398853
HGNC Page
HGNC:46392
Description:
Type:
pseudo (Ensembl: misc_RNA)
RefSeq Status:
INFERRED
Related Functional Gene:
RN7SL1
Latest Assembly:
GRCh38 - Human Genome Assembly GRCh38
Position:
Human Assembly
Chr
Position (strand)
Source
Genome Browsers
JBrowse
NCBI
UCSC
Ensembl
GRCh38
15
40,615,665 - 40,615,928 (-)
NCBI
GRCh38
GRCh38
hg38
GRCh38
GRCh38.p14 Ensembl
15
40,615,665 - 40,615,928 (-)
Ensembl
GRCh38
hg38
GRCh38
GRCh37
15
40,907,863 - 40,908,126 (-)
NCBI
GRCh37
GRCh37
hg19
GRCh37
Cytogenetic Map
15
q15.1
NCBI
T2T-CHM13v2.0
15
38,421,389 - 38,421,652 (-)
NCBI
T2T-CHM13v2.0
JBrowse:
View Region in Genome Browser (JBrowse)
Model
Annotation
Click to see Annotation Summary View
References
Genomics
.
miRNA Target Status (No longer updated)
Predicted Target Of
Summary Value
Count of predictions:
240
Count of miRNA genes:
235
Interacting mature miRNAs:
240
Transcripts:
ENST00000578594
Prediction methods:
Miranda, Rnahybrid
Result types:
miRGate_prediction
The detailed report is available here:
Full Report
CSV
TAB
Printer
miRNA Target Status data imported from miRGate (
http://mirgate.bioinfo.cnio.es/
).
For more information about miRGate, see
PMID:25858286
or access the full paper
here
.
QTLs in Region (GRCh38)
1 to 8 of 8 rows
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The following
QTLs
overlap with this region.
Full Report
CSV
TAB
Printer
Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2289410
BW327_H
Body weight QTL 327 (human)
3.32
0.0001
Body fat amount
15
19980129
45980129
Human
1643273
BW330_H
Body Weight QTL 330 (human)
1.05
0.014
Body weight
body mass index
15
26866719
52866719
Human
2289430
BMD7_H
Bone mineral density QTL 7 (human)
3.32
0.0001
Bone mineral density
15
19980129
45980129
Human
1559411
SCL107_H
Serum cholesterol level QTL 107 (human)
3.88
Lipid level
triglyceride
15
26543552
52543552
Human
2299958
PRSTS330_H
Prostate tumor susceptibility QTL 330 (human)
1.02
0.0151
Prostate tumor susceptibility
15
34790230
60790230
Human
1643523
BW284_H
Body Weight QTL 284 (human)
1.95
0.0013
Body weight
15
21792889
47792889
Human
1559354
LDLPS4_H
Low density lipoprotein particle size QTL 4 (human)
2.2
0.019
LDL particle size
15
34790230
60790230
Human
2289420
BW314_H
Body weight QTL 314 (human)
2.72
0.0003
Body weight
lean mass
15
19980129
45980129
Human
1 to 8 of 8 rows
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Expression
RNA-SEQ Expression
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
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adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
32
160
79
80
341
142
337
3
63
274
63
208
683
449
34
169
178
271
250
9
Too many to show, limit is 500. Download them if you would like to view them all.
Strain/Cell Line
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Sex
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Age
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Tissue
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Geo Sample Id
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Value
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Unit
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Assembly
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Reference
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Sequence
Nucleotide Sequences
1 to 4 of 4 rows
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RefSeq Transcripts
NG_033114
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
NG_043928
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
GenBank Nucleotide
AC022405
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
CP068263
(Get FASTA)
NCBI Sequence Viewer
Search GEO for Microarray Profiles
1 to 4 of 4 rows
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Reference Sequences
0 to 0 of 0 rows
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Ensembl Acc Id:
ENST00000578594
Type:
CODING
Position:
Human Assembly
Chr
Position (strand)
Source
GRCh38.p14 Ensembl
15
40,615,665 - 40,615,928 (-)
Ensembl
0 to 0 of 0 rows
3
5
10
20
100
All Rows
Additional Information
External Database Links
1 to 6 of 6 rows
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Database
Acc Id
Source(s)
COSMIC
RN7SL376P
COSMIC
Ensembl Genes
ENSG00000265814
Ensembl, ENTREZGENE
GTEx
ENSG00000265814
GTEx
HGNC ID
HGNC:46392
ENTREZGENE
Human Proteome Map
RN7SL376P
Human Proteome Map
NCBI Gene
RN7SL376P
ENTREZGENE
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