Gm39774 (predicted gene, 39774) - Rat Genome Database

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Gene: Gm39774 (predicted gene, 39774) Mus musculus
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Symbol: Gm39774
Name: predicted gene, 39774
RGD ID: 10023354
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LCN17; lipocalin 17; uncharacterized protein Gm39774; uncharacterized protein LOC105244100
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,672,167 - 26,677,275 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,672,190 - 26,724,826 (-)EnsemblGRCm39 Ensembl
GRCm38226,782,155 - 26,787,263 (-)NCBIGRCm38GRCm38mm10GRCm38
Celera226,485,113 - 26,495,454 (-)NCBICelera
Cytogenetic Map2A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


PMID:25187969   PMID:30782214  



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Variants in Gm39774
245 total Variants

1 to 10 of 28 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse

1 to 10 of 28 rows





RefSeq Transcripts NM_001359165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AL732311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KJ004570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000324118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,672,190 - 26,724,826 (-)Ensembl
Ensembl Acc Id: ENSMUST00000324119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,672,190 - 26,677,284 (-)Ensembl
RefSeq Acc Id: NM_001359165   ⟹   NP_001346094
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,672,167 - 26,677,275 (-)NCBI
GRCm38226,782,155 - 26,787,263 (-)NCBI
Sequence:
Protein RefSeqs NP_001346094 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AHL44197 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001346094   ⟸   NM_001359165
- UniProtKB: W8QK46 (UniProtKB/TrEMBL)



1 to 9 of 9 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSMUSG00000134365 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000324119 ENTREZGENE
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
MGD MGI:5622659 ENTREZGENE
NCBI Gene Gm39774 ENTREZGENE
PhenoGen Gm39774 PhenoGen
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt W8QK46 ENTREZGENE, UniProtKB/TrEMBL
1 to 9 of 9 rows