Gm39774 (predicted gene, 39774) - Rat Genome Database

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Gene: Gm39774 (predicted gene, 39774) Mus musculus
Analyze
Symbol: Gm39774
Name: predicted gene, 39774
RGD ID: 10023354
MGI Page MGI
Description:
Type: protein-coding (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LCN17; lipocalin 17; uncharacterized protein Gm39774; uncharacterized protein LOC105244100
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39226,672,167 - 26,677,275 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl226,672,190 - 26,724,826 (-)EnsemblGRCm39 Ensembl
GRCm38226,782,155 - 26,787,263 (-)NCBIGRCm38GRCm38mm10GRCm38
Celera226,485,113 - 26,495,454 (-)NCBICelera
Cytogenetic Map2A3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:25187969   PMID:30782214  


Genomics


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
12904743Carcdq3_mcardiac collagen deposition QTL 3 (mouse)2323494028179150Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse
12903993Opfaq1_mopen field activity QTL 1 (mouse)2967669127022642Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000324118
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,672,190 - 26,724,826 (-)Ensembl
Ensembl Acc Id: ENSMUST00000324119
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl226,672,190 - 26,677,284 (-)Ensembl
RefSeq Acc Id: NM_001359165   ⟹   NP_001346094
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39226,672,167 - 26,677,275 (-)NCBI
GRCm38226,782,155 - 26,787,263 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001346094 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AHL44197 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001346094   ⟸   NM_001359165
- UniProtKB: W8QK46 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000134365 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000324119 ENTREZGENE
Gene3D-CATH 2.40.128.20 UniProtKB/TrEMBL
InterPro Calycin UniProtKB/TrEMBL
MGD MGI:5622659 ENTREZGENE
NCBI Gene Gm39774 ENTREZGENE
PhenoGen Gm39774 PhenoGen
Superfamily-SCOP SSF50814 UniProtKB/TrEMBL
UniProt W8QK46 ENTREZGENE, UniProtKB/TrEMBL