Gm29414 (predicted gene 29414) - Rat Genome Database

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Gene: Gm29414 (predicted gene 29414) Mus musculus
Analyze
Symbol: Gm29414
Name: predicted gene 29414
RGD ID: 10002560
MGI Page MGI
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39125,065,659 - 25,066,674 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl125,065,590 - 25,066,380 (-)EnsemblGRCm39 Ensembl
GRCm38125,026,578 - 25,027,593 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl125,026,581 - 25,027,232 (-)EnsemblGRCm38mm10GRCm38
Celera124,856,288 - 24,857,294 (-)NCBICelera
Cytogenetic Map1A5NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:24316575  


Genomics

Variants

.
Variants in Gm29414
48 total Variants

QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301011Cplaq4_mcircadian period of locomotor activity 4 (mouse)Not determined1967344243673601Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301073Orch5_mautoimmune orchitis resistance 5 (mouse)Not determined11906535153065454Mouse
1301275Sle10_msystematic lupus erythematosus susceptibility 10 (mouse)Not determined1288219436882352Mouse
15092046Wngrme1_mweek nine growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301370Adip1_madiposity 1 (mouse)Not determined1288219436882352Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
15092044Wtgrme1_mweek ten growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1301240Sluc15_msusceptibility to lung cancer 15 (mouse)Not determined11906535153065454Mouse
1301471Obq2_mobesity QTL 2 (mouse)Not determined1394162037941887Mouse
14700685Civq2_mcerebral infarct volume QTL 2 (mouse)11134048245340482Mouse
1301756Pgia1_mproteoglycan induced arthritis 1 (mouse)Not determined11906535153065454Mouse
1301891Alcp25_malcohol preference locus 25 (mouse)Not determined1125203185Mouse
1300834Cia20_mcollagen induced arthritis 20 (mouse)Not determined1125203185Mouse
4141646Fecq3_mfecundity QTL 3 (mouse)Not determined11291692026517685Mouse
15092055Lgrme1_mlate growth rate, maternal effect 1 (mouse)1328014237782236Mouse
12880407V125Dq2_mvitamin D active form serum level QTL 2 (mouse)11933908153339081Mouse
15092050Wsegrme1_mweek seven growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092051Wegrme1_mweek eight growth rate, maternal effect 1 (mouse)1328014237782236Mouse
15092048Wsigrme1_mweek six growth rate, maternal effect 1 (mouse)1328014237782236Mouse
1357475w3q13_mweight 3 weeks QTL 13 (mouse)Not determined12310959173976915Mouse
1301482Morph1_mmorphine antinociception 1 (mouse)Not determined1130367747Mouse
10043970Obq23_mobesity QTL 23 (mouse)Not determined1501266539012665Mouse


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_865298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC147128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000185379
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl125,065,590 - 25,066,380 (-)Ensembl
GRCm38.p6 Ensembl125,026,581 - 25,027,232 (-)Ensembl
Ensembl Acc Id: ENSMUST00000270505
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl125,065,590 - 25,066,337 (-)Ensembl
Ensembl Acc Id: ENSMUST00000270506
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl125,065,662 - 25,066,348 (-)Ensembl
RefSeq Acc Id: XR_865298
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39125,065,659 - 25,066,674 (-)NCBI
GRCm38125,026,578 - 25,027,593 (-)NCBI
Sequence:
Promoters
RGD ID:15092108
Promoter ID:EPDNEWNC_M14
Type:multiple initiation site
Name:Gm29414_1
Description:predicted gene 29414 [Source:MGI Symbol;Acc:MGI:5580120]
SO ACC ID:SO:0000170
Source:EPDNEWNC (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38125,027,267 - 25,027,327EPDNEWNC

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000099392 Ensembl
MGD MGI:5580120 ENTREZGENE
NCBI Gene Gm29414 ENTREZGENE
PhenoGen Gm29414 PhenoGen
RNAcentral URS000077BAE3 RNACentral