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Gene: Gm29200 (predicted gene 29200) Mus musculus

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Symbol:

Gm29200

Name:

predicted gene 29200

RGD ID:

10002157

MGI Page

MGI

Description:

Type:

ncrna (Ensembl: lncRNA)

RefSeq Status:

MODEL

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	12,632,538 - 12,637,146 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	12,632,659 - 12,637,483 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	12,499,481 - 12,504,089 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	12,501,190 - 12,504,426 (-)	Ensembl	GRCm38		mm10	GRCm38
Cytogenetic Map	18	A1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

References

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:16141072	PMID:16141073	PMID:18799693	PMID:24316575

Genomics

Variants

Variants in Gm29200
193 total Variants

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11354953	Mom21_m	modifier of Min 21 (mouse)					18	1	28893823	Mouse
13207585	Mwmlpt3_m	Morris water maze latency to platform, training, 3 (mouse)					18	1	33547739	Mouse
13207589	Mwmlpa3_m	Morris water maze latency to platform, all, 3 (mouse)					18	1	33547739	Mouse
1558873	Hrtfm7_m	heart failure modifier 7 (mouse)			Not determined		18	8086964	42087106	Mouse
4142127	Rafaril_m	Rafar interacting locus (mouse)			Not determined		18	1	23108555	Mouse
14928307	Manh83_m	mandible shape 83 (mouse)					18	1	26902168	Mouse
13432188	Actrse3_m	activity response to saline/ethanol 3 (mouse)					18	12374548	18574548	Mouse
12801458	Intmrm3_m	intima/media ratio modifier 3 (mouse)					18	1	31720756	Mouse
13432190	Actrse5_m	activity response to saline/ethanol 5 (mouse)					18	12174548	17574548	Mouse
12801462	Intim3_m	intima modifier 3 (mouse)					18	1	31720756	Mouse
4142250	Idd21.3_m	insulin dependent diabetes susceptibility 21.3 (mouse)			Not determined		18	6108404	21646477	Mouse
1558849	W3q15_m	weight 3 weeks QTL 15 (mouse)			Not determined		18	5041119	61272643	Mouse
27226723	Tibw9_m	tibia width 9, proximal, 16 week (mouse)					18	3200000	60933072	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XR_003952662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003952663	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_003952664	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC102131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK020362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000188118

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	12,634,247 - 12,637,483 (-)	Ensembl
GRCm38.p6 Ensembl	18	12,501,190 - 12,504,426 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000257493

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	18	12,632,659 - 12,637,150 (-)	Ensembl

RefSeq Acc Id:

XR_003952662

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	18	12,632,538 - 12,637,146 (-)	NCBI
GRCm38	18	12,499,481 - 12,504,089 (-)	NCBI

Sequence:

show sequence

TTCACACATGAGTCAGCCTACACAGGCAGAGAGAGCACATAACAGTTCCACAGGGTATATGTGT
ATCACAGCATGTGTGTCAGAGCACAATGGAGCTCAGGGGACAACTTGGAGGAGCTGGTCCTCTC
CTTCCAACATGCAAATTCCTGGAATCGAACTTGGGTCCTCAGGTTTGCTTGCAGATGCCTTTAC
CTGCTGAGCCATTTTTTCAGTCCTCCTTCAGTAGTTTGAATGCTCGCCCGCCTTCAGCTCTTAC
GTTACTGAGGGCCCCTTGCATGCGGTGGATTGGAACCTGGGAAGCTTTCTGCCTTTGCTTTCTG
CATGTGGATTACAACACGCTTGTGTCAACCCCTTCCATCTATTGTATTTAGGGCCGGAGGGTTT
GGTGCTGCTGTATTAGTGACCATCATCAGGTTTGGGAAGTGATTACTTCTTCAAATGTTTTCCT
TTCTCTTTCTGGAGCCACCATTATACACTGGGACACTTGAGCTCCTTCAAACTCACATCTGCCT
CCAAAAGACGGTATGAACAAAACTGTGTGAGCACTGAACACTCCACAGTCTATCAGATTCTAGA
CCCAGTGGTGGAGTTGTGCACTTTGGTAGCCAGTTGAAGCAAGAAGTTTAGTCTGTCATAGTTC
TACAAGCTCCAAGCCCCACATCAATGTGCTGGCTGCCCCAGCTGTATCAGGAGGGTCTCTTTGC
AGTTTGTAGATGACACACATGATTGAAAGAAAGCAATTTCTCTGATGTGTCTCTCTACGCTGGT
TTATTTTACTTATGTATCTGTGTGTGTGTGGCAGGTCTGCATGCCATGTTCATGCAGGAAGGTG
CTTATGGAGAGCAGAGGAACCCTTACAGCAGGCGTTACAGGAAGTGGTGAGCCACCCAGTGTGA
GTGCTGGGAATTAAACTCAGGTCCTCTGAAAACGCACAGAGCTCTTATCCACGGAGCCATCTCT
CTGACACTAAGGAACATGAGCTCTCGGCTTTCTCTGGGCATGAGTACTAGATCAGTTGGTATGA
GATGGAGAAGGAGAATCCGTGCTGACCAGCCTTCCTGGCAAGTTTCAAACCAATGAGAAAGCTC
TTCTTAGACAAGGGGGAAGCATCACCTAGGGAACTGTAGCTGAGGTGGTATTCTGCCCTGCTCC
AAGAGAGACAGAGAGTTGGGGGGCAGACAAAACCATGTAACCATGAAACACTCAATGGTACAGT
ATATTCTAGATTATGTGGTAGAGGTTTTCACATTGTATGTGTATGTGCACGTGTGTGTGTGTGC
ATGTAGGTGTTGTATAAAAAACTCGATTAAAAGAAATAAAATCCAGAACAGGAAGAATCATCAA
AAACCTCTAGCCTCCTCTTTTACCTCAATCACTTGCACTCTTCCGTGATGCAGCCTGTCTGGCC
GTGGGTCGCTGGGTTCCTTATGGATGAGGGACATGTGTTGACCCTGTTTAAAAAGAAGCAGGAA
TGCCTTAGTGCCTTAGATGGGATGCTTTGAGAGTCCTATTGATATTAGAAGAGATTCCTCTGTG
TGTCTACAGCCTATGAAACAACTGGCCCTTGACAACTCAGCTCTGATGGCTTAGTGACATGGAA
ACAGCTGGTGTGCTCAGCACCCTGAAGAAGAGAAAGTTTATGGATGAAGACATGGGCCCAGGAC
TCCAGGGCTTCCACTCTCAGCCTTGGCCCCACCCCATCAAGTGGCTGTGGGGAGGGAGCTTCAA
AAAAAACGGCATGGGCTCATCCCTGCATGGCAGCCCCACCCTAAGTCACACACTGCAGCCCAGC
TGTTCTGTGTCGGTTCCAAACCCTCAGGCGGTCCATTCATGAGGGCAGAACATGATCGAGGCTC
ACAACCACTTCAAACCTTAATCTAAGGAACAAGACTCTTAATTACAGTGGTTTAAAATAAAGCA
ACAAAGAAAAAATGTTGTGAGCCTAAATGGTTTCTATATCTGAAGGTAAAATTAACGATCACTA
CCTCTCAGCACATTCTAAGAGTATGTGCAGCCTAGTCCTCTGCAGTAAAAATTACATACAGCAG
CTCTC

hide sequence

RefSeq Acc Id:

XR_003952663

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	18	12,632,538 - 12,637,146 (-)	NCBI
GRCm38	18	12,499,481 - 12,504,089 (-)	NCBI

Sequence:

show sequence

TTCACACATGAGTCAGCCTACACAGGCAGAGAGAGCACATAACAGTTCCACAGGGTATATGTGT
ATCACAGCATGTGTGTCAGAGCACAATGGAGCTCAGGGGACAACTTGGAGGAGCTGGTCCTCTC
CTTCCAACATGCAAATTCCTGGAATCGAACTTGGGTCCTCAGGGCCGGAGGGTTTGGTGCTGCT
GTATTAGTGACCATCATCAGGTTTGGGAAGTGATTACTTCTTCAAATGTTTTCCTTTCTCTTTC
TGGAGCCACCATTATACACTGGGACACTTGAGCTCCTTCAAACTCACATCTGCCTCCAAAAGAC
GGTATGAACAAAACTGTGTGAGCACTGAACACTCCACAGTCTATCAGATTCTAGACCCAGTGGT
GGAGTTGTGCACTTTGGTAGCCAGTTGAAGCAAGAAGTTTAGTCTGTCATAGTTCTACAAGCTC
CAAGCCCCACATCAATGTGCTGGCTGCCCCAGCTGTATCAGGAGGGTCTCTTTGCAGTTTGTAG
ATGACACACATGATTGAAAGAAAGCAATTTCTCTGATGTGTCTCTCTACGCTGGTTTATTTTAC
TTATGTATCTGTGTGTGTGTGGCAGGTCTGCATGCCATGTTCATGCAGGAAGGTGCTTATGGAG
AGCAGAGGAACCCTTACAGCAGGCGTTACAGGAAGTGGTGAGCCACCCAGTGTGAGTGCTGGGA
ATTAAACTCAGGTCCTCTGAAAACGCACAGAGCTCTTATCCACGGAGCCATCTCTCTGACACTA
AGGAACATGAGCTCTCGGCTTTCTCTGGGCATGAGTACTAGATCAGTTGGTATGAGATGGAGAA
GGAGAATCCGTGCTGACCAGCCTTCCTGGCAAGTTTCAAACCAATGAGAAAGCTCTTCTTAGAC
AAGGGGGAAGCATCACCTAGGGAACTGTAGCTGAGGTGGTATTCTGCCCTGCTCCAAGAGAGAC
AGAGAGTTGGGGGGCAGACAAAACCATGTAACCATGAAACACTCAATGGTACAGTATATTCTAG
ATTATGTGGTAGAGGTTTTCACATTGTATGTGTATGTGCACGTGTGTGTGTGTGCATGTAGGTG
TTGTATAAAAAACTCGATTAAAAGAAATAAAATCCAGAACAGGAAGAATCATCAAAAACCTCTA
GCCTCCTCTTTTACCTCAATCACTTGCACTCTTCCGTGATGCAGCCTGTCTGGCCGTGGGTCGC
TGGGTTCCTTATGGATGAGGGACATGTGTTGACCCTGTTTAAAAAGAAGCAGGAATGCCTTAGT
GCCTTAGATGGGATGCTTTGAGAGTCCTATTGATATTAGAAGAGATTCCTCTGTGTGTCTACAG
CCTATGAAACAACTGGCCCTTGACAACTCAGCTCTGATGGCTTAGTGACATGGAAACAGCTGGT
GTGCTCAGCACCCTGAAGAAGAGAAAGTTTATGGATGAAGACATGGGCCCAGGACTCCAGGGCT
TCCACTCTCAGCCTTGGCCCCACCCCATCAAGTGGCTGTGGGGAGGGAGCTTCAAAAAAAACGG
CATGGGCTCATCCCTGCATGGCAGCCCCACCCTAAGTCACACACTGCAGCCCAGCTGTTCTGTG
TCGGTTCCAAACCCTCAGGCGGTCCATTCATGAGGGCAGAACATGATCGAGGCTCACAACCACT
TCAAACCTTAATCTAAGGAACAAGACTCTTAATTACAGTGGTTTAAAATAAAGCAACAAAGAAA
AAATGTTGTGAGCCTAAATGGTTTCTATATCTGAAGGTAAAATTAACGATCACTACCTCTCAGC
ACATTCTAAGAGTATGTGCAGCCTAGTCCTCTGCAGTAAAAATTACATACAGCAGCTCTC

hide sequence

RefSeq Acc Id:

XR_003952664

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	18	12,632,538 - 12,637,146 (-)	NCBI
GRCm38	18	12,499,481 - 12,504,089 (-)	NCBI

Sequence:

show sequence

TTCACACATGAGTCAGCCTACACAGGCAGAGAGAGCACATAACAGTTCCACAGGGTATATGTGT
ATCACAGCATGTGTGTCAGAGCACAATGGAGCTCAGGGGACAACTTGGAGGAGCTGGTCCTCTC
CTTCCAACATGCAAATTCCTGGAATCGAACTTGGGTCCTCAGCCTATGAAACAACTGGCCCTTG
ACAACTCAGCTCTGATGGCTTAGTGACATGGAAACAGCTGGTGTGCTCAGCACCCTGAAGAAGA
GAAAGTTTATGGATGAAGACATGGGCCCAGGACTCCAGGGCTTCCACTCTCAGCCTTGGCCCCA
CCCCATCAAGTGGCTGTGGGGAGGGAGCTTCAAAAAAAACGGCATGGGCTCATCCCTGCATGGC
AGCCCCACCCTAAGTCACACACTGCAGCCCAGCTGTTCTGTGTCGGTTCCAAACCCTCAGGCGG
TCCATTCATGAGGGCAGAACATGATCGAGGCTCACAACCACTTCAAACCTTAATCTAAGGAACA
AGACTCTTAATTACAGTGGTTTAAAATAAAGCAACAAAGAAAAAATGTTGTGAGCCTAAATGGT
TTCTATATCTGAAGGTAAAATTAACGATCACTACCTCTCAGCACATTCTAAGAGTATGTGCAGC
CTAGTCCTCTGCAGTAAAAATTACATACAGCAGCTCTC

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSMUSG00000101406	Ensembl, ENTREZGENE
Ensembl Transcript	ENSMUST00000257493	ENTREZGENE
MGD	MGI:5579906	ENTREZGENE
NCBI Gene	Gm29200	ENTREZGENE
PhenoGen	Gm29200	PhenoGen
RNAcentral	URS0000768D46	RNACentral

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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