Mir3154 (microRNA 3154) - Rat Genome Database

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Gene: Mir3154 (microRNA 3154) Mus musculus
Analyze
Symbol: Mir3154
Name: microRNA 3154
RGD ID: 10000343
MGI Page MGI
Description: Orthologous to human MIR3154 (microRNA 3154).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: Gm23363; mir-3154; mmu-mir-3154
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,208,277 - 32,208,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,208,277 - 32,208,355 (+)EnsemblGRCm39 Ensembl
GRCm38232,318,265 - 32,318,343 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,318,265 - 32,318,343 (+)EnsemblGRCm38mm10GRCm38
Celera232,023,318 - 32,023,396 (+)NCBICelera
Cytogenetic Map2BNCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16381832   PMID:21037258   PMID:23329697  


Genomics

Comparative Map Data
Mir3154
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39232,208,277 - 32,208,355 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl232,208,277 - 32,208,355 (+)EnsemblGRCm39 Ensembl
GRCm38232,318,265 - 32,318,343 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl232,318,265 - 32,318,343 (+)EnsemblGRCm38mm10GRCm38
Celera232,023,318 - 32,023,396 (+)NCBICelera
Cytogenetic Map2BNCBI
MIR3154
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389128,244,947 - 128,245,030 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9128,244,947 - 128,245,030 (-)EnsemblGRCh38hg38GRCh38
GRCh379131,007,226 - 131,007,309 (-)NCBIGRCh37GRCh37hg19GRCh37
Celera9101,658,130 - 101,658,213 (-)NCBICelera
Cytogenetic Map9q34.11NCBI
HuRef9100,620,680 - 100,620,763 (-)NCBIHuRef
CHM1_19131,158,249 - 131,158,332 (-)NCBICHM1_1
T2T-CHM13v2.09140,452,061 - 140,452,144 (-)NCBIT2T-CHM13v2.0

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:249
Count of gene targets:
Count of transcripts:
Interacting mature miRNAs:230
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552706Cia24_mcollagen induced arthritis QTL 24 (mouse)Not determined22467911533523172Mouse
8552707Cia23_mcollagen induced arthritis QTL 23 (mouse)Not determined21212953766556453Mouse
12904005Cfq2_mconditioned fear QTL 2 (mouse)22702264256396228Mouse
14746979Manh51_mmandible shape 51 (mouse)22896112962961129Mouse
1300624Insq7_minsulin QTL 7 (mouse)Not determined2938444643384575Mouse
8552705Cia25_mcollagen induced arthritis 25 (mouse)Not determined22467911533523172Mouse
39128209Lwq14_mliver weight QTL 14 (mouse)220897778118894840Mouse
1558738W6q1_mweight 6 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
4141236Hbnr5_mHeligmosomoides bakeri nematode resistance 5 (mouse)Not determined31214567105143570Mouse
26884438Sklq12_mskull length QTL 12, 16 week (mouse)22459001254890012Mouse
12904008Cfq6_mconditioned fear QTL 6 (mouse)23120303544508204Mouse
1301790Pcfm1_mperiosteal circumference and femur length 1 (mouse)Not determined2823629642236396Mouse
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4142130Pgis2_mproteoglycan induced spondylitis 2 (mouse)Not determined22530805156971811Mouse
1301980Fcsa5_mfemoral cross-sectional area 5 (mouse)Not determined2767911541679261Mouse
1301376Etohc1_methanol consumption 1 (mouse)Not determined22112972555129871Mouse
1558915W3q1_mweight 3 weeks QTL 1 (mouse)Not determined220897778118894840Mouse
14746997Mancz2_mmandible centroid size 2 (mouse)22896112962961129Mouse
12792980Fbmd1_mfemoral bone mineral density 1, females only (mouse)22503449245034492Mouse
1301769Orgwq2_morgan weight QTL 2 (mouse)Not determined2388712693421651Mouse
1301641Sbmd2_mspinal bone mineral density 2 (mouse)Not determined21421456748214713Mouse
1357454Kidq1_mkidney weight QTL 1 (mouse)Not determined220897778118894840Mouse
10755513Amzn4_manatomical modifier of Zfp423 4 (mouse)2938444643384575Mouse
1558966W10q9_mweight 10 weeks QTL 9 (mouse)Not determined220897778118894840Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
13463470Tubisq1_mtubulointerstitial injury severity, QTL 1 (mouse)22368914557689269Mouse
1558899Egq1_mearly growth QTL 1 (mouse)Not determined220897778118894840Mouse
1357681Hrtq1_mheart weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357436Splq1_mspleen weight QTL 1 (mouse)Not determined220897778118894840Mouse
1357881Estoq1_membryo survival total QTL 1 (mouse)Not determined220897778118894840Mouse
1300577Capsq1_mcapsaicin sensitivity related QTL 1 (mouse)Not determined22760206084013384Mouse
4141708Pbwg1.2_mpostnatal body weight growth 1.2 (mouse)Not determined2112972555129871Mouse
10043876Adip22_madiposity 22 (mouse)Not determined2830805142308240Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000175024
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl232,208,277 - 32,208,355 (+)Ensembl
GRCm38.p6 Ensembl232,318,265 - 32,318,343 (+)Ensembl
RefSeq Acc Id: NR_128563
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39232,208,277 - 32,208,355 (+)NCBI
GRCm38232,318,265 - 32,318,343 (+)NCBI
Celera232,023,318 - 32,023,396 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:5453140 AgrOrtholog
Ensembl Genes ENSMUSG00000092765 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000175024 ENTREZGENE
MGD MGI:5453140 ENTREZGENE
miRBase MI0030343 ENTREZGENE
NCBI Gene Gm23363 ENTREZGENE
PhenoGen Mir3154 PhenoGen
RNAcentral URS00007782C4 RNACentral
  URS00007B9A1C RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-04-26 Mir3154  microRNA 3154  Gm23363  predicted gene, 23363  Symbol and/or name updated 27372883 PROVISIONAL