Welcome
{{ username}}
Message Center
{{ messageCount }} Messages
Go to Message Center
Watched Genes
{{$index + 1}}.
{{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Modify Subscription
Unsubscribe
Watched Ontology Terms
{{$index + 1}}.
{{ watchedTerm.term }} ({{watchedTerm.accId}})
Modify Subscription
Unsubscribe
{{gene.symbol}}:
{{ gene.description }}
×
Save List to My RGD
Create Name:
Description:
You must be logged in to use this feature
{{ loginError }}
{{ watchLinkText }}
Select categories you would like to watch. Updates to this gene will be sent to {{ username }}
{{geneWatchAttr}}
Analyze
Gene
Strain
QTL
List
×
Gene Annotator (Functional Annotation)
unavailable
Gene Annotator (Annotation Distribution)
unavailable
Variant Visualizer (Genomic Variants)
unavailble
Variant Visualizer (Genomic Variants)
unavailable
Gene Annotator (Functional Annotation)
Gene Annotator (Annotation Distribution)
Variant Visualizer (Genomic Variants)
InterViewer (Protein-Protein Interactions)
unavailable
Gviewer (Genome Viewer)
unavailable
Variant Visualizer (Damaging Variants) unavailble
Variant Visualizer (Damaging Variants)
unavailable
InterViewer (Protein-Protein Interactions)
GViewer (Genome Viewer)
Variant Visualizer (Damaging Variants)
Gene Annotator (Annotation Comparison)
unavailable
OLGA (Gene List Generator)
unavailable
Gene Annotator (Annotation Comparison)
OLGA (Gene List Generator)
Excel (Download)
MOET (Multi-Ontology Enrichement)
unavailable
GOLF (Gene-Ortholog Location Finder)
unavailable
MOET (Multi-Ontology Enrichement)
GOLF (Gene-Ortholog Location Finder)
x
Send Message
x
Send us a Message
Your email
Message
Send
Submit Data
|
Help
|
Video Tutorials
|
News
|
Publications
|
Download
|
REST API
|
Citing RGD
|
Contact
Home
Search RGD
Grant Resources
Citing RGD
About Us
Contact Us
Data
Genes
Variants
Community Projects
QTLs
Strains
Markers
Genome Information
Ontologies
Cell Lines
References
Download
Submit Data
Analysis & Visualization
OntoMate (Literature Search)
JBrowse (Genome Browser)
Synteny Browser (VCMap)
Variant Visualizer
Multi-Ontology Enrichment (MOET)
Gene-Ortholog Location Finder (GOLF)
InterViewer (Protein-Protein Interactions)
PhenoMiner (Quatitative Phenotypes)
Gene Annotator
OLGA (Gene List Generator)
AllianceMine
GViewer (Genome Viewer)
Diseases
Aging & Age-Related Disease
Cancer & Neoplastic Disease
Cardiovascular Disease
Coronavirus Disease
Developmental Disease
Diabetes
Hematologic Disease
Immune & Inflammatory Disease
Infectious Disease
Liver Disease
Neurological Disease
Obesity & Metabolic Syndrome
Renal Disease
Respiratory Disease
Sensory Organ Disease
Phenotypes & Models
Find Models
Genetic Models
Autism Models
Rat PhenoMiner (Quantitative Phenotypes)
Chinchilla PhenoMiner
Expected Ranges (Quantitative Phenotype)
PhenoMiner Term Comparison
Hybrid Rat Diversity Panel
Phenotypes
Phenotypes in Other Animal Models
Animal Husbandry
Strain Medical Records
Phylogenetics
Strain Availability
Calendar
Rats 101
Submissions
Photo Archive
Pathways
Community
Rat Community Forum
Directory of Rat Laboratories
Video Tutorials
News
RGD Publications
RGD Presentations Archive
Nomenclature Guidelines
Resource Links
Laboratory Resources
Employment Resources
Advanced Search (OLGA)
View As List
View As Table
GENE - TERM ANNOTATION REPORT
2 Annotations Found.
An association has been curated linking
Atm
and
colon carcinoma
in Rattus norvegicus.
The association was
inferred from sequence orthology
(ISO)
The annotation was made from
RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
The annotation has been inferred from sequence orthology with
ATM (Homo sapiens)
[(IAGP) inferred by association of genotype and phenotype]
137
RGD objects have been annotated to
colon carcinoma
(DOID:1520)
77
papers in RGD have been used to annotate
Atm
Curation Notes: ClinVar Annotator: match by term: Carcinoma of colon
Original References(s):
PMID:10817650
PMID:12673804
PMID:12697903
PMID:12810666
PMID:12882767
PMID:12935933
PMID:14695997
PMID:15101044
PMID:15280931
PMID:15880721
PMID:16574953
PMID:16631465
PMID:16832357
PMID:17023046
PMID:17333338
PMID:17341484
PMID:17393301
PMID:17517479
PMID:17623063
PMID:17640065
PMID:19404735
PMID:19431188
PMID:19781682
PMID:20305132
PMID:20826828
PMID:21787400
PMID:21833744
PMID:21933854
PMID:22369572
PMID:22529920
PMID:23091097
PMID:23555315
PMID:23585524
PMID:23807571
PMID:24142997
PMID:24416720
PMID:24728327
PMID:25148578
PMID:25186627
PMID:25257301
PMID:25318351
PMID:25523272
PMID:25587027
PMID:25614872
PMID:25741868
PMID:25980754
PMID:26009992
PMID:26123645
PMID:26207792
PMID:26467025
PMID:26580448
PMID:26898890
PMID:26901136
PMID:27146902
PMID:28135145
PMID:28492532
PMID:28652578
PMID:28717660
PMID:28726808
PMID:28779002
PMID:29522266
PMID:29641532
PMID:29659569
PMID:30256826
PMID:30303537
PMID:30613976
PMID:31159747
PMID:31415627
PMID:31742824
PMID:32522261
PMID:33471991
PMID:34262154
PMID:34646395
PMID:9792409
PMID:9887333
An association has been curated linking
Atm
and
colon carcinoma
in Rattus norvegicus.
The association was
inferred from sequence orthology
(ISO)
The annotation was made from
RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
The annotation has been inferred from sequence orthology with
ATM (Homo sapiens)
[(IAGP) inferred by association of genotype and phenotype]
137
RGD objects have been annotated to
colon carcinoma
(DOID:1520)
77
papers in RGD have been used to annotate
Atm
Curation Notes: ClinVar Annotator: match by term: Carcinoma of colon | ClinVar Annotator: match by term: Colonic carcinoma
Original References(s):
PMID:10425038
PMID:12673804
PMID:12697903
PMID:12810666
PMID:12882767
PMID:12935933
PMID:14695997
PMID:14754616
PMID:15101044
PMID:15280931
PMID:15880721
PMID:16574953
PMID:16631465
PMID:16652348
PMID:16832357
PMID:17000706
PMID:17023046
PMID:17333338
PMID:17341484
PMID:17351744
PMID:17393301
PMID:17502119
PMID:17517479
PMID:17623063
PMID:17640065
PMID:17910737
PMID:19404735
PMID:19431188
PMID:19781682
PMID:20305132
PMID:20826828
PMID:21665257
PMID:21787400
PMID:21833744
PMID:21933854
PMID:22369572
PMID:22529920
PMID:23091097
PMID:23555315
PMID:23585524
PMID:23807571
PMID:24142997
PMID:24416720
PMID:24728327
PMID:25085752
PMID:25148578
PMID:25186627
PMID:25257301
PMID:25318351
PMID:25523272
PMID:25587027
PMID:25614872
PMID:25741868
PMID:25980754
PMID:26009992
PMID:26123645
PMID:26207792
PMID:26467025
PMID:26580448
PMID:26689913
PMID:26898890
PMID:26901136
PMID:27146902
PMID:27224988
PMID:27365426
PMID:28135145
PMID:28492532
PMID:28652578
PMID:28717660
PMID:28726808
PMID:28779002
PMID:29155101
PMID:29522266
PMID:29641532
PMID:29659569
PMID:30256826
PMID:30303537
PMID:30613976
PMID:31159747
PMID:31415627
PMID:31742824
PMID:32113160
PMID:32522261
PMID:33191115
PMID:33471991
PMID:34262154
PMID:34646395
PMID:35047863
PMID:35264596
PMID:37091313
PMID:37262986
PMID:8845835
PMID:9792409
PMID:9887333
Go Back to source page
Continue to Ontology report