Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

GENE - TERM ANNOTATION REPORT

9 Annotations Found.

An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from Martinez A, etal., Ann Rheum Dis. 2010 Jan;69(1):309-11. Epub .
  • 8 additional annotations were made from Martinez A, etal., Ann Rheum Dis. 2010 Jan;69(1):309-11. Epub .
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA
  • Curation Notes: DNA:haplotype:promoter/CDS:rs3087456G/rs4774C


    • An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from Swanberg M, etal., Nat Genet 2005 May;37(5):486-94. Epub 2005 Apr 10.
  • 13 additional annotations were made from Swanberg M, etal., Nat Genet 2005 May;37(5):486-94. Epub 2005 Apr 10.
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA
  • Qualifier: susceptibility
  • Curation Notes: DNA:polymorphism:promoter:-168A>G


    • An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from Akkad DA, etal., Int J Immunogenet. 2006 Feb;33(1):59-61.
  • 8 additional annotations were made from Akkad DA, etal., Int J Immunogenet. 2006 Feb;33(1):59-61.
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA
  • Qualifier: no_association
  • Curation Notes: DNA:polymorphism:promoter:rs3087456, no association in a German cohort


    • An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from OMIM Disease Annotation Pipeline
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA


    • An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
  • The annotation has been inferred by association of genotype and phenotype with RGD:8561113 (Homo sapiens)
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA
  • Curation Notes: ClinVar Annotator: match by term: Rheumatoid arthritis
  • Original References(s): PMID:15821736 PMID:16849401


    • An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
  • The annotation has been inferred by association of genotype and phenotype with RGD:13617203 (Homo sapiens)
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA
  • Curation Notes: ClinVar Annotator: match by term: Rheumatoid arthritis
  • Original References(s): PMID:28492532


    • An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred from experiment (EXP)
    		•  
  • The annotation was made from RGD automated import pipeline for CTD gene-to-disease annotations
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA
  • Curation Notes: CTD Direct Evidence: marker/mechanism


    • An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
  • The annotation has been inferred by association of genotype and phenotype with RGD:401855412 (Homo sapiens)
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA
  • Curation Notes: ClinVar Annotator: match by term: Rheumatoid arthritis
  • Original References(s): PMID:25741868


    • An association has been curated linking CIITA and rheumatoid arthritis in Homo sapiens.        

  • The association was inferred by association of genotype and phenotype (IAGP)
    		•  
  • The annotation was made from RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
  • The annotation has been inferred by association of genotype and phenotype with RGD:13832656|RGD:14398956 (Homo sapiens) & RGD:13832656|RGD:14398956 (Homo sapiens)
  • 3386 RGD objects have been annotated to rheumatoid arthritis  (DOID:7148)
  • 24 papers in RGD have been used to annotate CIITA
  • Curation Notes: ClinVar Annotator: match by term: RHEUMATOID ARTHRITIS, SUSCEPTIBILITY TO | ClinVar Annotator: match by term: Rheumatoid arthritis
  • Original References(s): PMID:25741868 PMID:28492532


    • Go Back to source page   Continue to Ontology report