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MAMMALIAN PHENOTYPE - ANNOTATIONS

The Mouse Adult Gross Anatomy Ontology and Mammalian Phenotype Ontology are downloaded weekly from the Mouse Genome Informatics databases at Jackson Laboratories (ftp://ftp.informatics.jax.org/pub/reports/index.html). For more information about these ontologies, see the MGI Publications Page at http://www.informatics.jax.org/mgihome/other/publications.shtml.
Term:abnormal cerebral cortex morphology
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Accession:MP:0000788 term browser browse the term
Definition:any structural anomaly of thin layer of grey matter on the surface of the cerebral hemisphere that folds into gyri; it is responsible for intellectual faculties and higher mental functions
Synonyms:exact_synonym: abnormal pallium morphology
 narrow_synonym: Cortical dysplasia;   cerebral cortex dysplasia;   pallium dysplasia
 xref: HP:0002539


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abnormal neocortex morphology term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Depdc5 DEP domain containing 5, GATOR1 subcomplex subunit IMP RGD PMID:26873552 RGD:11573213 NCBI chr14:77,732,297...77,862,924
Ensembl chr14:77,732,297...77,862,794 		JBrowse link
G Depdc5em1Kyo DEP domain containing 5, GATOR1 subcomplex subunit; TALEN induced mutant1, Kyo IMP RGD PMID:26873552 RGD:11573213
G Depdc5em2Kyo DEP domain containing 5, GATOR1 subcomplex subunit; TALEN induced mutant2, Kyo IMP RGD PMID:26873552 RGD:11573213
G Eml1 EMAP like 1 IAGP RGD PMID:9236234 RGD:597538480 NCBI chr 6:133,048,271...133,221,642
Ensembl chr 6:127,284,029...127,457,246 		JBrowse link
G Eml1tish EMAP like 1, tish mutant IAGP RGD PMID:9236234 RGD:597538480
abnormal stratification in cerebral cortex term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eml1 EMAP like 1 IAGP RGD PMID:9236234 RGD:597538480 NCBI chr 6:133,048,271...133,221,642
Ensembl chr 6:127,284,029...127,457,246 		JBrowse link
G Eml1tish EMAP like 1, tish mutant IAGP RGD PMID:9236234 RGD:597538480
decreased cerebral cortex average cell area term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc9a6 solute carrier family 9 member A6 IMP RGD PMID:34928329 RGD:151664747 NCBI chr  X:139,468,045...139,524,111
Ensembl chr  X:134,420,756...134,485,375 		JBrowse link
G Slc9a6 em1Moro solute carrier family 9 member A6;CRISPR/Cas9 induced mutant1, Moro IMP RGD PMID:34928329 RGD:151664747
loss of cortex neurons term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc9a6 solute carrier family 9 member A6 IMP RGD PMID:34928329 RGD:151664747 NCBI chr  X:139,468,045...139,524,111
Ensembl chr  X:134,420,756...134,485,375 		JBrowse link
G Slc9a6 em1Moro solute carrier family 9 member A6;CRISPR/Cas9 induced mutant1, Moro IMP RGD PMID:34928329 RGD:151664747
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Term Annotations click to browse term
  mammalian phenotype 5425
    nervous system phenotype 383
      abnormal nervous system morphology 220
        abnormal brain morphology 142
          abnormal forebrain morphology 86
            abnormal telencephalon morphology 32
              abnormal cerebral hemisphere morphology 21
                abnormal cerebral cortex morphology 11
                  abnormal cerebral cortex average cell area + 3
                  abnormal cerebral cortex cell density + 0
                  abnormal cerebral cortex cell number + 0
                  abnormal cerebral cortex pyramidal cell morphology + 0
                  abnormal cerebral cortex total cell area + 0
                  abnormal cingulate gyrus morphology + 0
                  abnormal neocortex morphology + 8
                  abnormal orbitofrontal cortex morphology 0
                  abnormal premotor cortex morphology + 0
                  abnormal primary motor cortex morphology + 0
                  abnormal somatosensory cortex morphology + 0
                  abnormal stratification in cerebral cortex 3
                  abnormal visual cortex morphology 0
                  cerebral cortex microinfarct 0
                  delaminated cerebral cortex 0
                  loss of cortex neurons 3
                  thickened cerebral cortex 0
                  thin cerebral cortex 0
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