Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:phagosome maturation involved in apoptotic cell clearance
go back to main search page
Accession:GO:0090386 term browser browse the term
Definition:A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell and contributes to apoptotic cell clearance. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.


show annotations for term's descendants           Sort by:
phagosome-lysosome fusion involved in apoptotic cell clearance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SPG11 SPG11 vesicle trafficking associated, spatacsin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26284655) Ensembl
MGI		 PMID:26284655 GO_REF:0000107 NCBI chr15:23,519,311...23,620,532
Ensembl chr15:41,688,081...41,788,616 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19447
    cellular process 19000
      vesicle-mediated transport 1517
        endocytosis 694
          phagocytosis 221
            apoptotic cell clearance 42
              phagosome maturation involved in apoptotic cell clearance 1
                phagolysosome assembly involved in apoptotic cell clearance + 1
                phagosome acidification involved in apoptotic cell clearance 0
Path 2
Term Annotations click to browse term
  biological_process 19447
    localization 5836
      establishment of localization 5178
        transport 4277
          import into cell 920
            endocytosis 694
              phagocytosis 221
                apoptotic cell clearance 42
                  phagosome maturation involved in apoptotic cell clearance 1
                    phagolysosome assembly involved in apoptotic cell clearance + 1
                    phagosome acidification involved in apoptotic cell clearance 0
paths to the root