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pyruvate carboxylase deficiency disease - Ontology Report - Rat Genome Database

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RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.

Term:pyruvate carboxylase deficiency disease
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Accession:DOID:3651 term browser browse the term
Definition:A carbohydrate metabolic disorder that is characterized by deficiency of pyruvate carboxylase causing decreased utilization of carbohydrates and toxic accumulation of lactic acid, possibly has_symptom periodic lactate elevations, gastrointestinal upset, neonatal onset of metabolic acidosis, failure to thrive, developmental delay, seizures, death, and has_material_basis_in autosomal recessive inheritance of mutation in the PC gene, which encodes pyruvate carboxylase, a critical protein in the citric acid cycle and in gluconeogenesis. (DO)
Synonyms:exact_synonym: PC deficiency;   PC-RELATED CONDITION;   ataxia with lactic acidosis 2;   ataxia with lactic acidosis II;   deficiency of pyruvic carboxylase;   pyruvate carboxylase deficiency;   type II ataxia with lactic acidosis
 primary_id: MESH:D015324
 alt_id: MIM:266150
 xref: EFO:1001142;   NCI:C85040
For additional species annotation, visit the Alliance of Genome Resources.


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pyruvate carboxylase deficiency disease term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC130006142 ATAC-STARR-seq lymphoblastoid active region 5058 IAGP ClinVar Annotator: match by term: Pyruvate carboxylase deficiency ClinVar PMID:25741868 PMID:28492532 NCBI chr11:66,868,772...66,868,881 JBrowse link
G LOC130006147 ATAC-STARR-seq lymphoblastoid active region 5062 IAGP ClinVar Annotator: match by term: Pyruvate carboxylase deficiency ClinVar NCBI chr11:66,958,341...66,958,390 JBrowse link
G LRFN4 leucine rich repeat and fibronectin type III domain containing 4 IAGP ClinVar Annotator: match by term: Pyruvate carboxylase deficiency ClinVar PMID:12112657 PMID:19306334 PMID:25741868 PMID:28492532 NCBI chr11:66,857,064...66,860,475
Ensembl chr11:66,856,647...66,860,475
JBrowse link
G PC pyruvate carboxylase IAGP
EXP
DNA:missense mutations:cds:p.A650T, p.M743I (human)
ClinVar Annotator: match by term: Pyruvate carboxylase deficiency
ClinVar Annotator: match by term: PC-related condition | ClinVar Annotator: match by term: Pyruvate carboxylase deficiency
CTD Direct Evidence: marker/mechanism
ClinVar
CTD
OMIM
RGD
PMID:9536098 PMID:9585002 PMID:9585612 PMID:12112657 PMID:16199547 More... RGD:737741 NCBI chr11:66,848,420...66,958,383
Ensembl chr11:66,848,417...66,958,386
JBrowse link
Leigh Necrotizing Encephalopathy due to Pyruvate Carboxylase Deficiency term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PC pyruvate carboxylase IAGP ClinVar Annotator: match by term: Leigh syndrome due to pyruvate carboxylase deficiency ClinVar PMID:25741868 PMID:28492532 NCBI chr11:66,848,420...66,958,383
Ensembl chr11:66,848,417...66,958,386
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  disease 147117
    Nutritional and Metabolic Diseases 26998
      disease of metabolism 26998
        mitochondrial metabolism disease 1260
          pyruvate carboxylase deficiency disease 4
            Leigh Necrotizing Encephalopathy due to Pyruvate Carboxylase Deficiency 1
Path 2
Term Annotations click to browse term
  disease 147117
    disease of anatomical entity 134156
      nervous system disease 71651
        central nervous system disease 51558
          brain disease 48865
            Metabolic Brain Diseases 1892
              Metabolic Brain Diseases, Inborn 1722
                pyruvate carboxylase deficiency disease 4
                  Leigh Necrotizing Encephalopathy due to Pyruvate Carboxylase Deficiency 1
paths to the root