.
spermatogenic failure 90 - Ontology Report - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

RGD DISEASE ONTOLOGY - ANNOTATIONS

RGD uses the Human Disease Ontology (DO, https://disease-ontology.org/) for disease curation across species. RGD automatically downloads each new release of the ontology on a monthly basis. Some additional terms which are required for RGD's curation purposes but are not currently covered in the official version of DO have been added. As corresponding terms are added to DO, these custom terms are retired and the DO terms substituted in existing annotations and subsequently used for curation.
Term:spermatogenic failure 90
go back to main search page
Accession:DOID:0070589 term browser browse the term
Definition:A spermatogenic failure characterized by asthenozoospermia that has_material_basis_in homozygous or compound heterozygous mutation in the ARMC12 gene on chromosome 6p21.31. (DO)
Synonyms:exact_synonym: SPGF90
 alt_id: DOID:9007862
 xref: MIM:620744;   MONDO:0958242

Please select species to view GViewer data.

show annotations for term's descendants           Sort by:
spermatogenic failure 90 term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G N Armc12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chrNW_004624754:21,787,998...21,795,825
Ensembl chrNW_004624754:21,788,031...21,795,807 		JBrowse link
G G ARMC12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chr17:36,368,789...36,392,119
Ensembl chr17:36,368,832...36,388,749 		JBrowse link
G P ARMC12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chr 7:31,583,544...31,601,790
Ensembl chr 7:31,586,797...31,603,600 		JBrowse link
G S Armc12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chrNW_004936476:23,538,020...23,562,126
Ensembl chrNW_004936476:23,537,987...23,555,667 		JBrowse link
G D ARMC12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chr12:4,868,831...4,879,801
Ensembl chr12:4,869,774...4,879,793 		JBrowse link
G B ARMC12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chr 6:35,299,170...35,311,231
Ensembl chr 6:36,500,828...36,512,824 		JBrowse link
G C Armc12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chrNW_004955437:3,591,343...3,599,887
Ensembl chrNW_004955437:3,592,085...3,600,959 		JBrowse link
G R Armc12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chr20:6,589,573...6,600,059
Ensembl chr20:6,587,859...6,598,352 		JBrowse link
G M Armc12 armadillo repeat containing 12 ISO ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chr17:28,749,835...28,757,949
Ensembl chr17:28,749,780...28,758,084 		JBrowse link
G H ARMC12 armadillo repeat containing 12 IAGP ClinVar Annotator: match by term: Spermatogenic failure 90 OMIM
ClinVar		 PMID:35534203 NCBI chr 6:35,731,524...35,749,079
Ensembl chr 6:35,737,032...35,749,079 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  disease 292546
    disease of anatomical entity 276172
      reproductive system disease 38884
        male reproductive system disease 24448
          male infertility 3391
            spermatogenic failure 1867
              spermatogenic failure 90 10
Path 2
Term Annotations click to browse term
  disease 292546
    disease of anatomical entity 276172
      Urogenital Diseases 60198
        Female Urogenital Diseases and Pregnancy Complications 29805
          Female Urogenital Diseases 24732
            female reproductive system disease 24702
              infertility 4152
                male infertility 3391
                  spermatogenic failure 1867
                    spermatogenic failure 90 10
paths to the root