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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:5'-CUGCGAUUUUAAAGACCUAGAGUAC-3' RNA fragment
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Accession:CHEBI:84595 term browser browse the term
Definition:An RNA fragment comprised of five guanosine, eight adenosine, seven uridine and five cytidine residues connected by 3'->5' phosphodiester linkages in the sequence C-U-G-C-G-A-U-U-U-U-A-A-A-G-A-C-C-U-A-G-A-G-U-A-C.
Synonyms:exact_synonym: C-U-G-C-G-A-U-U-U-U-A-A-A-G-A-C-C-U-A-G-A-G-U-A-C
 related_synonym: CpUpGpCpGpApUpUpUpUpApApApGpApCpCpUpApGpApGpUpApC;   Formula=C238H294N94O172P24;   InChI=1S/C238H294N94O172P24/c239-96-1-13-308(227(372)286-96)197-122(342)121(341)72(457-197)26-432-505(384,385)492-158-83(468-209(134(158)354)320-58-273-108-171(244)257-50-265-179(108)320)37-443-512(398,399)491-157-82(467-208(133(157)353)319-24-12-107(340)297-238(319)383)36-442-520(414,415)501-167-93(478-218(143(167)363)329-67-282-117-188(329)299-223(253)304-193(117)368)47-453-524(422,423)499-165-90(475-216(141(165)361)327-65-280-115-178(251)264-57-272-186(115)327)44-450-528(430,431)504-170-94(479-221(146(170)366)332-70-285-120-191(332)302-226(256)307-196(120)371)48-454-523(420,421)497-162-85(470-213(138(162)358)324-62-277-112-175(248)261-54-269-183(112)324)39-445-514(402,403)489-155-79(464-206(131(155)351)317-22-10-105(338)295-236(317)381)31-435-508(390,391)483-148-73(458-199(124(148)344)310-15-3-98(241)288-229(310)374)28-434-507(388,389)482-149-74(459-200(125(149)345)311-16-4-99(242)289-230(311)375)29-439-517(408,409)493-159-88(473-210(135(159)355)321-59-274-109-172(245)258-51-266-180(109)321)42-449-527(428,429)503-169-95(480-220(145(169)365)331-69-284-119-190(331)301-225(255)306-195(119)370)49-455-525(424,425)498-164-87(472-215(140(164)360)326-64-279-114-177(250)263-56-271-185(114)326)41-447-522(418,419)496-163-86(471-214(139(163)359)325-63-278-113-176(249)262-55-270-184(113)325)40-446-521(416,417)495-161-84(469-212(137(161)357)323-61-276-111-174(247)260-53-268-182(111)323)38-444-513(400,401)490-156-80(465-207(132(156)352)318-23-11-106(339)296-237(318)382)34-438-510(394,395)486-153-77(462-204(129(153)349)315-20-8-103(336)293-234(315)379)32-436-509(392,393)485-152-78(463-203(128(152)348)314-19-7-102(335)292-233(314)378)33-437-511(396,397)487-154-81(466-205(130(154)350)316-21-9-104(337)294-235(316)380)35-441-518(410,411)494-160-89(474-211(136(160)356)322-60-275-110-173(246)259-52-267-181(110)322)43-448-526(426,427)502-168-92(477-219(144(168)364)330-68-283-118-189(330)300-224(254)305-194(118)369)45-451-515(404,405)484-150-75(460-201(126(150)346)312-17-5-100(243)290-231(312)376)30-440-519(412,413)500-166-91(476-217(142(166)362)328-66-281-116-187(328)298-222(252)303-192(116)367)46-452-516(406,407)488-151-76(461-202(127(151)347)313-18-6-101(334)291-232(313)377)27-433-506(386,387)481-147-71(25-333)456-198(123(147)343)309-14-2-97(240)287-228(309)373/h1-24,50-95,121-170,197-221,333,341-366H,25-49H2,(H,384,385)(H,386,387)(H,388,389)(H,390,391)(H,392,393)(H,394,395)(H,396,397)(H,398,399)(H,400,401)(H,402,403)(H,404,405)(H,406,407)(H,408,409)(H,410,411)(H,412,413)(H,414,415)(H,416,417)(H,418,419)(H,420,421)(H,422,423)(H,424,425)(H,426,427)(H,428,429)(H,430,431)(H2,239,286,372)(H2,240,287,373)(H2,241,288,374)(H2,242,289,375)(H2,243,290,376)(H2,244,257,265)(H2,245,258,266)(H2,246,259,267)(H2,247,260,268)(H2,248,261,269)(H2,249,262,270)(H2,250,263,271)(H2,251,264,272)(H,291,334,377)(H,292,335,378)(H,293,336,379)(H,294,337,380)(H,295,338,381)(H,296,339,382)(H,297,340,383)(H3,252,298,303,367)(H3,253,299,304,368)(H3,254,300,305,369)(H3,255,301,306,370)(H3,256,302,307,371)/t71-,72-,73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,121-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,156-,157-,158-,159-,160-,161-,162-,163-,164-,165-,166-,167-,168-,169-,170-,197-,198-,199-,200-,201-,202-,203-,204-,205-,206-,207-,208-,209-,210-,211-,212-,213-,214-,215-,216-,217-,218-,219-,220-,221-/m1/s1;   InChIKey=KPNZCSCIQCMFSX-IGQIIPPBSA-N;   SMILES=Nc1ccn([C@@H]2O[C@H](COP(O)(=O)O[C@@H]3[C@@H](COP(O)(=O)O[C@@H]4[C@@H](COP(O)(=O)O[C@@H]5[C@@H](COP(O)(=O)O[C@@H]6[C@@H](COP(O)(=O)O[C@@H]7[C@@H](COP(O)(=O)O[C@@H]8[C@@H](COP(O)(=O)O[C@@H]9[C@@H](COP(O)(=O)O[C@@H]%10[C@@H](COP(O)(=O)O[C@@H]%11[C@@H](COP(O)(=O)O[C@@H]%12[C@@H](COP(O)(=O)O[C@@H]%13[C@@H](COP(O)(=O)O[C@@H]%14[C@@H](COP(O)(=O)O[C@@H]%15[C@@H](COP(O)(=O)O[C@@H]%16[C@@H](COP(O)(=O)O[C@@H]%17[C@@H](COP(O)(=O)O[C@@H]%18[C@@H](COP(O)(=O)O[C@@H]%19[C@@H](COP(O)(=O)O[C@@H]%20[C@@H](COP(O)(=O)O[C@@H]%21[C@@H](COP(O)(=O)O[C@@H]%22[C@@H](COP(O)(=O)O[C@@H]%23[C@@H](COP(O)(=O)O[C@@H]%24[C@@H](COP(O)(=O)O[C@@H]%25[C@@H](COP(O)(=O)O[C@@H]%26[C@@H](CO)O[C@H]([C@@H]%26O)n%26ccc(N)nc%26=O)O[C@H]([C@@H]%25O)n%25ccc(=O)[nH]c%25=O)O[C@H]([C@@H]%24O)n%24cnc%25c%24nc(N)[nH]c%25=O)O[C@H]([C@@H]%23O)n%23ccc(N)nc%23=O)O[C@H]([C@@H]%22O)n%22cnc%23c%22nc(N)[nH]c%23=O)O[C@H]([C@@H]%21O)n%21cnc%22c(N)ncnc%21%22)O[C@H]([C@@H]%20O)n%20ccc(=O)[nH]c%20=O)O[C@H]([C@@H]%19O)n%19ccc(=O)[nH]c%19=O)O[C@H]([C@@H]%18O)n%18ccc(=O)[nH]c%18=O)O[C@H]([C@@H]%17O)n%17ccc(=O)[nH]c%17=O)O[C@H]([C@@H]%16O)n%16cnc%17c(N)ncnc%16%17)O[C@H]([C@@H]%15O)n%15cnc%16c(N)ncnc%15%16)O[C@H]([C@@H]%14O)n%14cnc%15c(N)ncnc%14%15)O[C@H]([C@@H]%13O)n%13cnc%14c%13nc(N)[nH]c%14=O)O[C@H]([C@@H]%12O)n%12cnc%13c(N)ncnc%12%13)O[C@H]([C@@H]%11O)n%11ccc(N)nc%11=O)O[C@H]([C@@H]%10O)n%10ccc(N)nc%10=O)O[C@H]([C@@H]9O)n9ccc(=O)[nH]c9=O)O[C@H]([C@@H]8O)n8cnc9c(N)ncnc89)O[C@H]([C@@H]7O)n7cnc8c7nc(N)[nH]c8=O)O[C@H]([C@@H]6O)n6cnc7c(N)ncnc67)O[C@H]([C@@H]5O)n5cnc6c5nc(N)[nH]c6=O)O[C@H]([C@@H]4O)n4ccc(=O)[nH]c4=O)O[C@H]([C@@H]3O)n3cnc4c(N)ncnc34)[C@@H](O)[C@H]2O)c(=O)n1
 xref: PMID:7678618


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  CHEBI ontology 19899
    chemical entity 19897
      atom 19897
        nonmetal atom 19819
          nitrogen atom 19003
            nitrogen molecular entity 19003
              nucleobase-containing molecular entity 5740
                RNA fragment 0
                  5'-CUGCGAUUUUAAAGACCUAGAGUAC-3' RNA fragment 0
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  CHEBI ontology 19899
    subatomic particle 19897
      composite particle 19897
        hadron 19897
          baryon 19897
            nucleon 19897
              atomic nucleus 19897
                atom 19897
                  main group element atom 19835
                    p-block element atom 19835
                      carbon group element atom 19776
                        carbon atom 19772
                          organic molecular entity 19772
                            organic molecule 19724
                              organic cyclic compound 19514
                                organic heterocyclic compound 18893
                                  organonitrogen heterocyclic compound 18176
                                    nucleobase 12572
                                      nucleobase-containing molecular entity 5740
                                        oligonucleotide 1
                                          RNA fragment 0
                                            5'-CUGCGAUUUUAAAGACCUAGAGUAC-3' RNA fragment 0
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