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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:5'-AGGCAAUAAAACACGACCWUAAUG-3' RNA fragment
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Accession:CHEBI:84594 term browser browse the term
Definition:An RNA fragment comprised of four guanosine, eleven adenosine, two uridine and five cytidine residues connected by 3'->5' phosphodiester linkages in the sequence A-G-G-C-A-A-U-A-A-A-A-C-A-C-G-A-C-C-W-U-A-A-U-G.
Synonyms:exact_synonym: A-G-G-C-A-A-U-A-A-A-A-C-A-C-G-A-C-C-W-U-A-A-U-G
 related_synonym: ApGpGpCpApApUpApApApApCpApCpGpApCpCpWpUpApApUpG;   Formula=C240H297N101O166P24;   InChI=1S/C240H297N101O166P24/c241-97-1-11-317(231(377)299-97)203-125(350)149(486-510(391,392)437-24-75-150(126(351)204(462-75)318-12-2-98(242)300-232(318)378)488-512(395,396)439-30-81-156(132(357)210(468-81)324-18-8-104(344)306-238(324)384)492-513(397,398)440-31-82-157(133(358)211(469-82)325-19-9-105(345)307-239(325)385)493-516(403,404)449-35-86-165(141(366)220(473-86)334-64-291-114-179(254)269-53-280-190(114)334)501-526(423,424)451-38-89-161(137(362)216(476-89)330-60-287-110-175(250)265-49-276-186(110)330)498-522(415,416)445-29-80-155(131(356)209(467-80)323-17-7-103(343)305-237(323)383)485-508(387,388)435-22-73-122(347)123(348)202(460-73)338-68-295-118-194(338)309-227(258)313-198(118)373)74(461-203)23-438-511(393,394)487-151-76(463-205(127(151)352)319-13-3-99(243)301-233(319)379)25-441-520(411,412)497-163-93(480-218(139(163)364)332-62-289-112-177(252)267-51-278-188(112)332)42-456-530(431,432)507-171-95(482-226(147(171)372)341-71-298-121-197(341)312-230(261)316-201(121)376)44-457-518(407,408)491-154-78(465-208(130(154)355)322-16-6-102(246)304-236(322)382)27-443-519(409,410)495-159-84(471-214(135(159)360)328-58-285-108-173(248)263-47-274-184(108)328)33-447-514(399,400)489-152-77(464-206(128(152)353)320-14-4-100(244)302-234(320)380)26-442-521(413,414)496-160-88(475-215(136(160)361)329-59-286-109-174(249)264-48-275-185(109)329)37-453-528(427,428)503-167-92(479-222(143(167)368)336-66-293-116-181(256)271-55-282-192(116)336)41-455-529(429,430)504-168-91(478-223(144(168)369)337-67-294-117-182(257)272-56-283-193(117)337)40-454-527(425,426)502-166-87(474-221(142(166)367)335-65-292-115-180(255)270-54-281-191(115)335)36-450-517(405,406)494-158-83(470-212(134(158)359)326-20-10-106(346)308-240(326)386)32-446-523(417,418)499-162-90(477-217(138(162)363)331-61-288-111-176(251)266-50-277-187(111)331)39-452-525(421,422)500-164-85(472-219(140(164)365)333-63-290-113-178(253)268-52-279-189(113)333)34-448-515(401,402)490-153-79(466-207(129(153)354)321-15-5-101(245)303-235(321)381)28-444-524(419,420)505-170-96(483-225(146(170)371)340-70-297-120-196(340)311-229(260)315-200(120)375)45-458-531(433,434)506-169-94(481-224(145(169)370)339-69-296-119-195(339)310-228(259)314-199(119)374)43-436-509(389,390)484-148-72(21-342)459-213(124(148)349)327-57-284-107-172(247)262-46-273-183(107)327/h1-20,46-96,122-171,202-226,342,347-372H,21-45H2,(H,387,388)(H,389,390)(H,391,392)(H,393,394)(H,395,396)(H,397,398)(H,399,400)(H,401,402)(H,403,404)(H,405,406)(H,407,408)(H,409,410)(H,411,412)(H,413,414)(H,415,416)(H,417,418)(H,419,420)(H,421,422)(H,423,424)(H,425,426)(H,427,428)(H,429,430)(H,431,432)(H,433,434)(H2,241,299,377)(H2,242,300,378)(H2,243,301,379)(H2,244,302,380)(H2,245,303,381)(H2,246,304,382)(H2,247,262,273)(H2,248,263,274)(H2,249,264,275)(H2,250,265,276)(H2,251,266,277)(H2,252,267,278)(H2,253,268,279)(H2,254,269,280)(H2,255,270,281)(H2,256,271,282)(H2,257,272,283)(H,305,343,383)(H,306,344,384)(H,307,345,385)(H,308,346,386)(H3,258,309,313,373)(H3,259,310,314,374)(H3,260,311,315,375)(H3,261,312,316,376)/t72-,73-,74-,75-,76-,77-,78-,79-,80-,81-,82-,83-,84-,85-,86-,87-,88-,89-,90-,91-,92-,93-,94-,95-,96-,122-,123-,124-,125-,126-,127-,128-,129-,130-,131-,132-,133-,134-,135-,136-,137-,138-,139-,140-,141-,142-,143-,144-,145-,146-,147-,148-,149-,150-,151-,152-,153-,154-,155-,156-,157-,158-,159-,160-,161-,162-,163-,164-,165-,166-,167-,168-,169-,170-,171-,202-,203-,204-,205-,206-,207-,208-,209-,210-,211-,212-,213-,214-,215-,216-,217-,218-,219-,220-,221-,222-,223-,224-,225-,226-/m1/s1;   InChIKey=CDWDKKVUEJPVJW-YHSXPVHTSA-N;   SMILES=Nc1ccn([C@@H]2O[C@H](COP(O)(=O)O[C@@H]3[C@@H](COP(O)(=O)O[C@@H]4[C@@H](COP(O)(=O)O[C@@H]5[C@@H](COP(O)(=O)O[C@@H]6[C@@H](COP(O)(=O)O[C@@H]7[C@@H](COP(O)(=O)O[C@@H]8[C@@H](COP(O)(=O)O[C@@H]9[C@@H](COP(O)(=O)O[C@@H]%10[C@@H](COP(O)(=O)O[C@@H]%11[C@@H](COP(O)(=O)O[C@@H]%12[C@@H](COP(O)(=O)O[C@@H]%13[C@@H](CO)O[C@H]([C@@H]%13O)n%13cnc%14c(N)ncnc%13%14)O[C@H]([C@@H]%12O)n%12cnc%13c%12nc(N)[nH]c%13=O)O[C@H]([C@@H]%11O)n%11cnc%12c%11nc(N)[nH]c%12=O)O[C@H]([C@@H]%10O)n%10ccc(N)nc%10=O)O[C@H]([C@@H]9O)n9cnc%10c(N)ncnc9%10)O[C@H]([C@@H]8O)n8cnc9c(N)ncnc89)O[C@H]([C@@H]7O)n7ccc(=O)[nH]c7=O)O[C@H]([C@@H]6O)n6cnc7c(N)ncnc67)O[C@H]([C@@H]5O)n5cnc6c(N)ncnc56)O[C@H]([C@@H]4O)n4cnc5c(N)ncnc45)O[C@H]([C@@H]3O)n3cnc4c(N)ncnc34)[C@@H](OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3OP(O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n3cnc4c3nc(N)[nH]c4=O)n3ccc(=O)[nH]c3=O)n3cnc4c(N)ncnc34)n3cnc4c(N)ncnc34)n3ccc(=O)[nH]c3=O)n3ccc(=O)[nH]c3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)n3cnc4c3nc(N)[nH]c4=O)n3ccc(N)nc3=O)n3cnc4c(N)ncnc34)[C@H]2O)c(=O)n1
 xref: PMID:7678618


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  CHEBI ontology 26503
    chemical entity 26483
      atom 26479
        nonmetal atom 25741
          nitrogen atom 22703
            nitrogen molecular entity 22703
              nucleobase-containing molecular entity 6053
                RNA fragment 0
                  5'-AGGCAAUAAAACACGACCWUAAUG-3' RNA fragment 0
Path 2
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  CHEBI ontology 26503
    subatomic particle 26479
      composite particle 26479
        hadron 26479
          baryon 26479
            nucleon 26479
              atomic nucleus 26479
                atom 26479
                  main group element atom 26216
                    p-block element atom 26216
                      carbon group element atom 25661
                        carbon atom 25623
                          organic molecular entity 25623
                            organic molecule 25366
                              organic cyclic compound 24419
                                organic heterocyclic compound 22428
                                  organonitrogen heterocyclic compound 20376
                                    nucleobase 13024
                                      nucleobase-containing molecular entity 6053
                                        oligonucleotide 1
                                          RNA fragment 0
                                            5'-AGGCAAUAAAACACGACCWUAAUG-3' RNA fragment 0
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