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uridine 5'-monophosphate - Ontology Report - Rat Genome Database

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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:uridine 5'-monophosphate
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Accession:CHEBI:16695 term browser browse the term
Definition:A pyrimidine ribonucleoside 5'-monophosphate having uracil as the nucleobase.
Synonyms:related_synonym: 5'-UMP;   5'Uridylic acid;   Formula=C9H13N2O9P;   InChI=1S/C9H13N2O9P/c12-5-1-2-11(9(15)10-5)8-7(14)6(13)4(20-8)3-19-21(16,17)18/h1-2,4,6-8,13-14H,3H2,(H,10,12,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1;   InChIKey=DJJCXFVJDGTHFX-XVFCMESISA-N;   SMILES=O[C@@H]1[C@@H](COP(O)(O)=O)O[C@H]([C@@H]1O)n1ccc(=O)[nH]c1=O;   UMP;   Uridine monophosphate;   Uridylic acid;   pU;   uridine 5'-(dihydrogen phosphate);   uridine 5'-phosphate;   uridine 5'-phosphoric acid;   uridylate
 alt_id: CHEBI:13508;   CHEBI:13509;   CHEBI:27231;   CHEBI:46362;   CHEBI:46381;   CHEBI:46382;   CHEBI:47721;   CHEBI:9849
 xref: CAS:58-97-9;   DrugBank:DB03685;   Gmelin:310455;   HMDB:HMDB0000288;   KEGG:C00105;   KNApSAcK:C00007311
 xref_mesh: MESH:D014542
 xref: MetaCyc:UMP;   PDBeChem:U5PrF10;   PDBeChem:UrF10;   PMID:22735334;   PMID:2559771;   Reaxys:47486;   Wikipedia:Uridine_monophosphate
 cyclic_relationship: is_conjugate_acid_of CHEBI:57865

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uridine 5'-monophosphate term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bsg basigin decreases expression ISO Uridine Monophosphate results in decreased expression of BSG protein CTD PMID:36574092 NCBI chr 7:10,643,788...10,651,005
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
sofosbuvir term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Klrc1 killer cell lectin like receptor C1 decreases expression ISO sofosbuvir co-treated with ledipasvir decreased expression of NCR1 protein in natural killer cells RGD PMID:31218578 RGD:40400920 NCBI chr 4:164,828,163...164,838,446
Ensembl chr 4:163,147,189...163,152,425 		JBrowse link
G Ncr1 natural cytotoxicity triggering receptor 1 affects expression ISO sofosbuvir co-treated with ledipasvir affects expression of NCR1 protein in natural killer cells RGD PMID:31218578 RGD:40400920 NCBI chr 1:78,657,409...78,665,255
Ensembl chr 1:69,616,601...69,660,558 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19887
    role 19858
      biological role 19856
        biochemical role 19566
          metabolite 19554
            prokaryotic metabolite 18592
              bacterial metabolite 18592
                Escherichia coli metabolite 18503
                  uridine 5'-monophosphate 3
                    2'-O-methyluridine 5'-monophosphate + 0
                    5,6-dihydrouridine 5'-monophosphate + 0
                    5-(2-methoxy-2-oxoethyl)uridine 5'-monophosphate + 0
                    5-aminomethyl-2-thiouridine 5'-monophosphate + 0
                    5-bromouridine 5'-monophosphate 0
                    5-carboxymethylaminomethyl-2'-O-methyluridine 5'-monophosphate + 0
                    5-carboxymethylaminomethyluridine 5'-monophosphate + 0
                    5-fluorouridine 5'-monophosphate 0
                    5-methylaminomethyl-2-thiouridine 5'-monophosphate + 0
                    6-oxouridine 5'-phosphate 0
                    N(3)-methyluridine 5'-monophosphate + 0
                    O(4')-(5'-uridylyl)-L-tyrosine 0
                    UMP 3'-end residue + 0
                    UMP 5'-end residue + 0
                    ddhUMP 0
                    sofosbuvir + 2
                    uracil octosyl acid 5'-phosphate 0
                    uridine 5'-monophosphate residue + 0
Path 2
Term Annotations click to browse term
  CHEBI ontology 19887
    subatomic particle 19885
      composite particle 19885
        hadron 19885
          baryon 19885
            nucleon 19885
              atomic nucleus 19885
                atom 19885
                  main group element atom 19824
                    p-block element atom 19824
                      chalcogen 19580
                        oxygen atom 19551
                          oxygen molecular entity 19551
                            hydroxides 19361
                              oxoacid 18797
                                pnictogen oxoacid 15018
                                  phosphorus oxoacid 14577
                                    phosphoric acids 13927
                                      phosphoric acid 13927
                                        phosphoric acid derivative 13839
                                          phosphate 13838
                                            organic phosphate 13838
                                              carbohydrate phosphate 1969
                                                phospho sugar 1814
                                                  aldose phosphate 1811
                                                    aldopentose phosphate 1803
                                                      ribose phosphate 1798
                                                        ribonucleotide 1758
                                                          ribonucleoside 5'-phosphate 760
                                                            ribonucleoside 5'-monophosphate 478
                                                              pyrimidine ribonucleoside 5'-monophosphate 441
                                                                uridine 5'-monophosphate 3
                                                                  2'-O-methyluridine 5'-monophosphate + 0
                                                                  5,6-dihydrouridine 5'-monophosphate + 0
                                                                  5-(2-methoxy-2-oxoethyl)uridine 5'-monophosphate + 0
                                                                  5-aminomethyl-2-thiouridine 5'-monophosphate + 0
                                                                  5-bromouridine 5'-monophosphate 0
                                                                  5-carboxymethylaminomethyl-2'-O-methyluridine 5'-monophosphate + 0
                                                                  5-carboxymethylaminomethyluridine 5'-monophosphate + 0
                                                                  5-fluorouridine 5'-monophosphate 0
                                                                  5-methylaminomethyl-2-thiouridine 5'-monophosphate + 0
                                                                  6-oxouridine 5'-phosphate 0
                                                                  N(3)-methyluridine 5'-monophosphate + 0
                                                                  O(4')-(5'-uridylyl)-L-tyrosine 0
                                                                  UMP 3'-end residue + 0
                                                                  UMP 5'-end residue + 0
                                                                  ddhUMP 0
                                                                  sofosbuvir + 2
                                                                  uracil octosyl acid 5'-phosphate 0
                                                                  uridine 5'-monophosphate residue + 0
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