Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_5.0
   

Chromosome Start Position Stop Position
Region Size: 111,413 (bp)   Positions: 167
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 5.0  
SBN/Ygl (MCW) 
.001
.002
.013
.069
.004
.994
.726
.681
.723
.274
.01
--
--
.085
.025
.093
.009
.002
.001
.001
.015
.146
.004
.571
.148
.15
.089
.106
.01
.008
.002
.007
.007
.008
.057
.042
.023
.001
.341
.148
.005
.007
--
.012
.161
.005
.01
.004
.049
--
--
.014
.025
.559
.885
.992
.049
.094
.033
.198
.056
.896
.006
.056
.085
.082
.161
.009
.888
.005
.057
.001
.027
.015
.086
.081
.154
.012
.703
.041
.721
.274
--
--
--
--
--
.291
.333
--
--
--
--
--
--
--
.022
--
--
.275
--
.29
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
.014
.004
.056
.017
.016
.021
.281
.061
--
.001
.007
--
--
.135
.023
.009
.015
.685
.163
--
.352
--
--
--
.093
--
--
.152
.236
.209
.202
.111
.677
.002
.113
.12
.31
--
--
--
.18
.001
.028
.274
.003
.157
.598
.561
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
Ttbk2
A
C
2
C
G
G
A
G
G
T
C
C
C
A
A
T
4
G
A
A
C
G
G
C
C
2
C
C
A
G
T
C
C
T
T
C
2
T
G
A
G
A
T
4
T
C
T
A
A
T
A
C
T
C
2
G
C
G
C
A
T
C
T
T
2
T
T
G
G
A
A
A
C
T
G
A
G
G
G
C
A
4
C
G
C
C
A
4
2
C
4
3
T
A
A
T
A
T
A
G
T
A
G
G
G
T
C
C
C
A
T
A
T
G
C
G
G
C
G
4
C
A
T
C
A
A
T
T
T
A
T
A
T
A
G
C
C
3
C
A
T
A
C
A
A
A
C
C
T
2
T
A
T
T
T
A
C
C
A
G
G
A
G
G
A
A
T
  119,222,687
  119,222,688
  119,223,000
  119,224,993
  119,225,033
  119,226,805
  119,226,813
  119,226,821
  119,226,824
  119,229,142
  119,230,145
  119,231,129
  119,231,133
  119,231,383
  119,232,682
  119,233,227
  119,233,437
  119,233,446
  119,234,806
  119,235,445
  119,236,472
  119,237,123
  119,237,219
  119,239,209
  119,240,116
  119,240,124
  119,240,675
  119,241,236
  119,241,732
  119,241,735
  119,241,739
  119,241,743
  119,241,746
  119,241,756
  119,241,769
  119,241,772
  119,243,358
  119,243,979
  119,244,075
  119,244,812
  119,245,935
  119,246,260
  119,246,567
  119,247,317
  119,247,723
  119,248,017
  119,251,457
  119,251,608
  119,251,868
  119,253,230
  119,253,470
  119,254,580
  119,254,898
  119,255,781
  119,257,901
  119,258,282
  119,260,404
  119,261,044
  119,262,287
  119,262,310
  119,262,564
  119,262,690
  119,263,465
  119,263,871
  119,263,900
  119,263,901
  119,265,385
  119,265,628
  119,266,271
  119,266,452
  119,266,464
  119,266,783
  119,267,504
  119,267,899
  119,268,305
  119,268,330
  119,269,032
  119,269,565
  119,269,988
  119,270,722
  119,271,059
  119,274,054
  119,281,026
  119,281,129
  119,281,131
  119,281,133
  119,281,281
  119,282,056
  119,282,078
  119,282,938
  119,284,162
  119,284,190
  119,284,191
  119,284,192
  119,284,198
  119,284,202
  119,284,540
  119,285,390
  119,285,416
  119,286,316
  119,287,950
  119,288,265
  119,288,713
  119,289,401
  119,289,416
  119,289,423
  119,289,454
  119,289,456
  119,289,493
  119,289,645
  119,289,647
  119,289,656
  119,289,676
  119,290,089
  119,290,469
  119,291,237
  119,291,562
  119,292,611
  119,293,042
  119,293,413
  119,294,878
  119,295,388
  119,295,753
  119,295,762
  119,296,124
  119,296,415
  119,296,564
  119,297,659
  119,297,756
  119,299,248
  119,301,114
  119,301,130
  119,301,426
  119,301,698
  119,305,708
  119,306,371
  119,306,410
  119,306,639
  119,311,337
  119,312,924
  119,313,561
  119,313,860
  119,313,898
  119,314,305
  119,318,760
  119,318,818
  119,319,808
  119,319,810
  119,320,924
  119,320,925
  119,321,436
  119,321,729
  119,324,955
  119,325,444
  119,325,452
  119,326,464
  119,328,468
  119,328,574
  119,329,068
  119,329,538
  119,330,155
  119,330,202
  119,330,225
  119,330,255
  119,330,503
  119,332,914
  119,332,916
A/-
-
-
A
T
-
-
-
A
A
-
C/T
C/T
G
C
C
-
A
-
-
2
A
T
A
-
-
T
T
G
-
G
G
G
A
2
A
-
-
A
-
A
G
5
-
C
17
2
T
G
G
G
T
C
T
-
A
T
A
A
T
G
T
-
A
2/-
T/-
C
T
A
G
2
T
2
A
A
-
-
A
G/C
2
G
-
-
3
3
C/G
G
-
2/-
T
4/-
3/-
-/TG
A/-
A/T
T/3
-
G
A/G
A
C
G
G/A
G/A
G/T
T/C
C/T
C/T
C/G
A/T
T/-
A/G
T/G
4
T
2
2
C/2
C
-
A
G
T/C
C/T
G
2
C
T/C
C
C
C
A/7
C
2
T
T
T
-
2
C
G
A/C
C/T
G
C
G
C/2
C/-
T/5
2/-
A
G
2
2
TC/-
-
2
3
A/G
T
A
A/-
G/5
G/A
2
G
C