Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
  Home     Edit Strains     Edit Gene List     Sequence Annotation
 Assembly Rnor_6.0
   

Chromosome Start Position Stop Position
Region Size: 127,681 (bp)   Positions: 207
Conservation 
Genes ( + ) 
Genes ( - ) 
Rnor 6.0  
SR/JrHsd (RGD) 
.083
.002
.0
.0
.001
.001
.002
.004
.011
.044
.002
.03
.017
.0
.003
.001
1.0
.0
1.0
.873
.021
.001
.986
.0
.0
.001
.0
.0
.001
.024
.0
.028
.001
.0
.0
.0
.015
.009
.0
.0
.001
.016
.006
.0
.39
.001
.01
.939
.001
.002
.0
.001
.001
.002
.003
.001
.006
.0
.0
.0
.001
.0
.033
.001
.009
.004
.0
.583
.701
.005
.132
.002
.002
.341
.089
.038
.005
.286
.105
.002
.015
.003
.023
.947
.0
.007
.009
.05
.001
.002
.009
.165
.0
.0
.084
.0
.001
.003
.005
.847
.0
.0
.019
.0
.002
.006
.001
.0
.004
.007
.01
.002
.038
.227
--
.0
.0
.0
.001
.001
.002
.0
.001
.016
.018
.003
.132
.003
.0
.049
.889
.001
.002
.004
.993
.92
.012
.015
.003
.15
.001
.0
.979
.0
.004
.006
.001
.002
.002
.036
.17
.0
.007
.697
.042
.002
.189
.0
.022
.001
.003
.002
.006
.002
.036
.018
.0
.063
.0
.001
.0
.0
.003
.988
.0
.0
.0
.073
.998
.001
.0
.005
.0
.0
.005
.128
.131
.0
.02
.001
.004
.004
.001
.003
.0
.037
.335
.0
.003
.001
.017
--
.015
.27
.298
.012
.0
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
--
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
Usp6nl
C
T
C
T
T
G
G
T
G
C
A
G
T
T
G
C
C
C
C
C
G
A
G
C
C
A
A
T
A
G
G
A
C
G
A
C
T
G
T
T
T
C
C
G
G
G
C
A
T
C
A
A
T
C
A
A
G
T
G
A
G
G
G
G
G
T
T
G
C
C
T
A
C
C
T
G
G
G
C
T
A
A
C
G
A
C
A
C
G
T
T
C
C
G
A
C
C
A
G
T
C
A
A
G
G
C
C
C
T
T
T
C
G
A
T
T
G
T
C
G
C
A
T
C
G
C
A
C
A
C
G
A
T
T
T
G
C
T
T
T
G
G
C
G
G
A
A
G
G
T
A
T
C
T
G
C
C
T
T
A
G
G
A
C
G
T
T
A
G
G
G
C
A
T
C
T
A
C
T
A
A
G
G
C
A
C
G
G
G
C
A
A
C
A
A
A
A
T
A
C
A
A
G
G
C
T
T
  75,759,625
  75,759,734
  75,760,119
  75,760,417
  75,760,982
  75,761,073
  75,761,088
  75,761,169
  75,761,232
  75,761,335
  75,761,616
  75,761,659
  75,761,730
  75,761,840
  75,761,963
  75,762,247
  75,762,531
  75,762,858
  75,763,426
  75,763,822
  75,764,543
  75,764,549
  75,765,106
  75,765,484
  75,765,502
  75,765,715
  75,765,720
  75,765,975
  75,768,728
  75,773,011
  75,774,194
  75,774,802
  75,775,087
  75,775,596
  75,776,651
  75,777,086
  75,777,189
  75,777,382
  75,777,428
  75,777,694
  75,777,998
  75,778,389
  75,778,904
  75,779,687
  75,780,166
  75,781,256
  75,782,642
  75,782,765
  75,782,926
  75,782,934
  75,783,351
  75,784,626
  75,785,337
  75,785,694
  75,787,200
  75,787,418
  75,787,733
  75,788,821
  75,788,979
  75,789,516
  75,789,773
  75,791,292
  75,793,965
  75,797,063
  75,797,292
  75,797,614
  75,798,159
  75,799,161
  75,799,163
  75,800,489
  75,800,514
  75,800,625
  75,801,103
  75,801,662
  75,801,934
  75,802,271
  75,802,387
  75,802,567
  75,802,615
  75,802,794
  75,802,920
  75,802,939
  75,802,948
  75,803,162
  75,803,270
  75,803,930
  75,803,945
  75,805,549
  75,806,303
  75,806,726
  75,807,816
  75,808,415
  75,808,739
  75,809,035
  75,809,205
  75,810,028
  75,810,500
  75,810,694
  75,811,559
  75,811,903
  75,811,915
  75,812,225
  75,812,339
  75,812,484
  75,812,591
  75,812,601
  75,812,897
  75,814,388
  75,814,519
  75,814,881
  75,814,951
  75,816,111
  75,818,244
  75,819,175
  75,820,652
  75,821,823
  75,821,904
  75,822,547
  75,823,137
  75,824,271
  75,824,515
  75,825,956
  75,826,926
  75,829,093
  75,831,416
  75,831,465
  75,835,278
  75,835,530
  75,837,651
  75,838,940
  75,840,963
  75,841,249
  75,841,329
  75,842,925
  75,843,746
  75,844,764
  75,845,247
  75,845,691
  75,846,531
  75,848,592
  75,848,724
  75,849,196
  75,849,547
  75,850,857
  75,852,758
  75,853,118
  75,856,159
  75,856,691
  75,856,802
  75,857,312
  75,858,684
  75,858,993
  75,859,265
  75,860,260
  75,860,688
  75,860,736
  75,860,938
  75,862,685
  75,862,744
  75,862,802
  75,863,725
  75,863,838
  75,865,251
  75,865,355
  75,865,372
  75,866,082
  75,866,846
  75,866,870
  75,867,083
  75,867,277
  75,867,737
  75,869,111
  75,869,262
  75,869,378
  75,869,540
  75,870,055
  75,870,188
  75,870,725
  75,871,622
  75,871,930
  75,871,993
  75,872,375
  75,872,474
  75,872,616
  75,872,994
  75,873,495
  75,874,822
  75,876,380
  75,876,526
  75,877,241
  75,877,429
  75,878,620
  75,878,876
  75,878,927
  75,879,212
  75,881,206
  75,881,805
  75,881,869
  75,882,282
  75,883,922
  75,884,230
  75,884,614
  75,884,857
  75,884,958
  75,885,143
  75,885,841
  75,886,840
A
C
T
C
A
A
A
C
A
T
G
A
C
C
T
T
G
T
T
T
A
G
A
T
T
G
C
C
G
C
T
G
T
A
C
T
C
A
C
C
C
G
T
T
A
C
T
T
C
A
G
G
C
T
G
C
T
C
A
G
A
A
A
A
A
C
G
A
A
C/G
C
C
T
T
C
A
A
A
A
C
G
G
T
A
G
T
G
A
A
C
C
G
T
A
G
G
G
G
A
C
T
C
G
A
A
T
A
T
C
C
G
T
A
G
C
C
A
C
T
A
T
G
C
T
A
G
G
T
C
T
T
G
C
A
C
T
A
A
C
C
T
A
A
A
A
G
G
T
A
C
G
C
A
C
A
T
A
C
C
C
A
A
G
T
A
C
C
T
A
A
A
A
G
C
T
C
G
T
C
G
C
A
A
T
C
T
A
A
A
G
G
G
G
G
G
A/C
T
C
C
T
G
G
A
A
T
C
C