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Assembly mRatBN7.2

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mRatBN7.2 assembly

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ACI/EurMcwi (2019)

Sample ID:	3000
Strain RGD ID	7364991
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

ACI/EurMcwi (2019NG)

Sample ID:	3048
Strain RGD ID	7364991
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

ACI/N (2020)

Sample ID:	3001
Strain RGD ID	10000
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Grant Information:	R24OD022617

BDIX/NemOdaMcwi (2022)

Sample ID:	3049
Strain RGD ID	156368567
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

BN-Lx/CubMcwi (2019)

Sample ID:	3002
Strain RGD ID	38676495
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

BN-Lx/CubMcwi (2019NG)

Sample ID:	3051
Strain RGD ID	38676495
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

BN/Crl (2021)

Sample ID:	3050
Strain RGD ID	737972
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

BN/NHsdMcwi (2019)

Sample ID:	3004
Strain RGD ID	61498
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

BN/NHsdMcwi (2019NG)

Sample ID:	3052
Strain RGD ID	61498
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

BN/NHsdMcwi (2020)

Sample ID:	3003
Strain RGD ID	61498
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

BN/NHsdMcwi (2021)

Sample ID:	3053
Strain RGD ID	61498
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

BN/NHsdMcwi (2022)

Sample ID:	3054
Strain RGD ID	61498
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

BN/NHsdMcwi (2023)

Sample ID:	3123
Strain RGD ID	61498
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

BN/RijHsd (2021)

Sample ID:	3055
Strain RGD ID	5508393
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Envigo/Inotiv
Grant Information:	R24OD022617

BN/SsN (2020)

Sample ID:	3005
Strain RGD ID	61115
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Grant Information:	R24OD022617

BUF/MnaMcwi (2022)

Sample ID:	3056
Strain RGD ID	156403001
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

BUF/N (2020)

Sample ID:	3006
Strain RGD ID	60986
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Grant Information:	R24OD022617

BXH2/CubMcwi (2020)

Sample ID:	3007
Strain RGD ID	149735530
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

BXH2/CubMcwi (2023)

Sample ID:	3116
Strain RGD ID	149735530
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

BXH3/CubMcwi (2020)

Sample ID:	3008
Strain RGD ID	149735533
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

BXH6/CubMcwi (2021)

Sample ID:	3057
Strain RGD ID	156420150
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

DA/OlaHsd (2019)

Sample ID:	3009
Strain RGD ID	734475
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Grant Information:	R24OD022617

DA/OlaHsd (2019NG)

Sample ID:	3058
Strain RGD ID	734475
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Envigo/Inotiv
Grant Information:	R24OD022617

European Variation Archive Release 4

Sample ID:	32
Strain RGD ID	0

F344/DuCrl (2019)

Sample ID:	3010
Strain RGD ID	734478
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Grant Information:	R24OD022617

F344/DuCrl (2019NG)

Sample ID:	3059
Strain RGD ID	734478
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

F344/DuCrl (2021)

Sample ID:	3060
Strain RGD ID	734478
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

F344/N (2020)

Sample ID:	3012
Strain RGD ID	13506918
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Grant Information:	R24OD022617

F344/NCrl (2019)

Sample ID:	3011
Strain RGD ID	737926
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Grant Information:	R24OD022617

F344/NCrl (2019NG)

Sample ID:	3061
Strain RGD ID	737926
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

F344/NHsd (2021)

Sample ID:	3062
Strain RGD ID	61109
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Envigo/Inotiv
Grant Information:	R24OD022617

F344/Stm (2019)

Sample ID:	3013
Strain RGD ID	1302686
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

F344/StmMcwi (2019)

Sample ID:	3063
Strain RGD ID	39456105
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FHH/EurMcwi (2019)

Sample ID:	3014
Strain RGD ID	629509
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

FHH/EurMcwi (2019NG)

Sample ID:	3064
Strain RGD ID	629509
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE12/Stm (2019NG)

Sample ID:	3066
Strain RGD ID	1302602
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE12/StmMcwi (2021)

Sample ID:	3065
Strain RGD ID	153323324
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE12/StmMcwi (2023)

Sample ID:	3126
Strain RGD ID	153323324
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE13/Stm (2019NG)

Sample ID:	3067
Strain RGD ID	1302665
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE13/StmMcwi (2023)

Sample ID:	3111
Strain RGD ID	156430094
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE14/Stm (2019NG)

Sample ID:	3068
Strain RGD ID	1302615
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE14/StmMcwi (2023)

Sample ID:	3124
Strain RGD ID	156430095
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE15/Stm (2019NG)

Sample ID:	3070
Strain RGD ID	1302673
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE15/StmMcwi (2021)

Sample ID:	3069
Strain RGD ID	153344518
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE15/StmMcwi (2023)

Sample ID:	3122
Strain RGD ID	153344518
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE16/Stm (2020)

Sample ID:	3015
Strain RGD ID	1302619
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

FXLE17/Stm (2019NG)

Sample ID:	3071
Strain RGD ID	1302708
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE17/StmMcwi (2023)

Sample ID:	3120
Strain RGD ID	156430100
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE18/Stm (2020)

Sample ID:	3016
Strain RGD ID	1302682
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

FXLE19/StmMcwi (2022)

Sample ID:	3072
Strain RGD ID	156430102
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE20/Stm (2019NG)

Sample ID:	3073
Strain RGD ID	1302633
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE20/StmMcwi (2023)

Sample ID:	3114
Strain RGD ID	156430109
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE21/StmMcwi (2023)

Sample ID:	3125
Strain RGD ID	156430103
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE22/StmMcwi (2023)

Sample ID:	3113
Strain RGD ID	156430104
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE23/Stm (2022)

Sample ID:	3074
Strain RGD ID	1302601
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE23/StmMcwi (2023)

Sample ID:	3117
Strain RGD ID	156430105
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE25/Stm (2022)

Sample ID:	3075
Strain RGD ID	1302603
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE25/StmMcwi (2023)

Sample ID:	3118
Strain RGD ID	156430107
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

FXLE26/Stm (2022)

Sample ID:	3076
Strain RGD ID	1302598
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

FXLE26/StmMcwi (2023)

Sample ID:	3110
Strain RGD ID	156430108
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

GK/FarMcwi (2019)

Sample ID:	3017
Strain RGD ID	10395297
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

GK/FarMcwi (2019NG)

Sample ID:	3077
Strain RGD ID	10395297
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

HXB10/IpcvMcwi (2019)

Sample ID:	3018
Strain RGD ID	38549351
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

HXB17/IpcvMcwi (2021)

Sample ID:	3078
Strain RGD ID	156420147
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

HXB18/IpcvMcwi (2021)

Sample ID:	3079
Strain RGD ID	156420148
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

HXB2/IpcvMcwi (2019)

Sample ID:	3020
Strain RGD ID	149735520
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

HXB20/IpcvMcwi (2020)

Sample ID:	3019
Strain RGD ID	149735521
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

HXB23/IpcvMcwi (2021)

Sample ID:	3080
Strain RGD ID	156420149
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

HXB31/IpcvMcwi (2019)

Sample ID:	3021
Strain RGD ID	149735519
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

HXB4/IpcvMcwi (2020)

Sample ID:	3022
Strain RGD ID	149735518
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

LE/Stm (2019)

Sample ID:	3030
Strain RGD ID	629485
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

LEW/Crl (2019)

Sample ID:	3023
Strain RGD ID	737932
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Grant Information:	R24OD022617

LEW/Crl (2019NG)

Sample ID:	3081
Strain RGD ID	737932
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

LEXF10A/StmMcwi (2020)

Sample ID:	3034
Strain RGD ID	149735517
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

LEXF10B/StmMcwi (2022)

Sample ID:	3082
Strain RGD ID	156430091
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF10C/Stm (2022)

Sample ID:	3083
Strain RGD ID	1302612
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

LEXF10C/StmMcwi (2023)

Sample ID:	3119
Strain RGD ID	156430092
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF11/Stm (2020)

Sample ID:	3024
Strain RGD ID	1302638
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

LEXF1A/Stm (2019)

Sample ID:	3025
Strain RGD ID	1302641
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

LEXF1C/Stm (2019)

Sample ID:	3026
Strain RGD ID	1302666
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

LEXF1C/StmMcwi (2021)

Sample ID:	3084
Strain RGD ID	153344519
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF2A/Stm (2022)

Sample ID:	3085
Strain RGD ID	1302605
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

LEXF2A/StmMcwi (2023)

Sample ID:	3109
Strain RGD ID	156430077
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF2B/Stm (2019)

Sample ID:	3027
Strain RGD ID	1302710
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

LEXF2C/StmMcwi (2022)

Sample ID:	3086
Strain RGD ID	156430079
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF3/Stm (2020)

Sample ID:	3028
Strain RGD ID	1302707
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

LEXF4/Stm (2020)

Sample ID:	3029
Strain RGD ID	1302604
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

LEXF5/Stm (2019NG)

Sample ID:	3087
Strain RGD ID	1302723
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

LEXF5/StmMcwi (2023)

Sample ID:	3112
Strain RGD ID	156430082
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF6B/Stm (2019NG)

Sample ID:	3088
Strain RGD ID	1302617
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

LEXF6B/StmMcwi (2023)

Sample ID:	3121
Strain RGD ID	153344520
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF7A/Stm (2019NG)

Sample ID:	3089
Strain RGD ID	1302652
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

LEXF7B/StmMcwi (2022)

Sample ID:	3090
Strain RGD ID	156430085
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF7C/StmMcwi (2022)

Sample ID:	3091
Strain RGD ID	156430086
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF8A/StmMcwi (2021)

Sample ID:	3092
Strain RGD ID	156430087
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF8D/Stm (2022)

Sample ID:	3093
Strain RGD ID	1302699
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	NBRP Japan
Grant Information:	R24OD022617

LEXF8D/StmMcwi (2023)

Sample ID:	3115
Strain RGD ID	156430089
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LEXF9/StmMcwi (2022)

Sample ID:	3094
Strain RGD ID	156430090
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

LH/MavRrrcAek (2020)

Sample ID:	3031
Strain RGD ID	10755352
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Grant Information:	R24OD022617

LL/MavRrrcAek (2020)

Sample ID:	3032
Strain RGD ID	149735516
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Grant Information:	R24OD022617

LN/MavRrrcAek (2020)

Sample ID:	3033
Strain RGD ID	10755354
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Grant Information:	R24OD022617

M520/N (2020)

Sample ID:	3036
Strain RGD ID	10024
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Grant Information:	R24OD022617

M520/NRrrcMcwi (2019)

Sample ID:	3035
Strain RGD ID	40818401
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

M520/NRrrcMcwi (2019NG)

Sample ID:	3095
Strain RGD ID	40818401
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

MR/N (2020)

Sample ID:	3037
Strain RGD ID	70449
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Grant Information:	R24OD022617

MR/NRrrc (2022)

Sample ID:	3096
Strain RGD ID	153323320
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	RRRC
Grant Information:	R24OD022617

MWF/Hsd (2019)

Sample ID:	3038
Strain RGD ID	737906
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

MWF/SimwMcwi (2019)

Sample ID:	3098
Strain RGD ID	155888488
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

MWF/SimwMcwi (2019NG)

Sample ID:	3097
Strain RGD ID	155888488
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

PVG/Seac (2019)

Sample ID:	3039
Strain RGD ID	1302722
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Grant Information:	R24OD022617

RCS/LavRrrcMcwi (2021)

Sample ID:	3099
Strain RGD ID	156362762
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

SHR/NCrl (2021)

Sample ID:	3101
Strain RGD ID	1357994
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

SHR/NHsd (2021)

Sample ID:	3102
Strain RGD ID	724574
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Envigo/Inotiv
Grant Information:	R24OD022617

SHR/OlalpcvMcwi (2019)

Sample ID:	3041
Strain RGD ID	38549352
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

SHR/OlalpcvMcwi (2019NG)

Sample ID:	3103
Strain RGD ID	38549352
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

SHRSP/A3NCrl (2019)

Sample ID:	3040
Strain RGD ID	2311051
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Grant Information:	R24OD022617

SHRSP/A3NCrl (2019NG)

Sample ID:	3100
Strain RGD ID	2311051
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

SR/JrHsd (2020)

Sample ID:	3042
Strain RGD ID	1582184
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Grant Information:	R24OD022617

SS/HsdMcwiCrl (2021)

Sample ID:	3104
Strain RGD ID	2308886
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

SS/JrHsd (2021)

Sample ID:	3106
Strain RGD ID	1582190
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Envigo/Inotiv
Grant Information:	R24OD022617

SS/JrHsdMcwi (2019)

Sample ID:	3043
Strain RGD ID	61499
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Grant Information:	R24OD022617

SS/JrHsdMcwi (2019NG)

Sample ID:	3105
Strain RGD ID	61499
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	MCW
Grant Information:	R24OD022617

WAG/RijCrl (2020)

Sample ID:	3044
Strain RGD ID	2312498
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Grant Information:	R24OD022617

WKY/N (2020)

Sample ID:	3046
Strain RGD ID	70454
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Grant Information:	R24OD022617

WKY/NCrl (2019)

Sample ID:	3045
Strain RGD ID	1358112
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Grant Information:	R24OD022617

WKY/NCrl (2019NG)

Sample ID:	3107
Strain RGD ID	1358112
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Charles River
Grant Information:	R24OD022617

WKY/NHsd (2022)

Sample ID:	3108
Strain RGD ID	61105
Platform:	Illumina-NovaSeq6000
Secondary Analysis:	BWA mem 0.7.17, GATK-4.1.3.0, Picard-2.20.7
Breeder:	Envigo/Inotiv
Grant Information:	R24OD022617

WN/N (2020)

Sample ID:	3047
Strain RGD ID	10045
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Grant Information:	R24OD022617

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