SNX5P2 (sorting nexin 5 pseudogene 2) - Rat Genome Database

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Gene: SNX5P2 (sorting nexin 5 pseudogene 2) Homo sapiens
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Symbol: SNX5P2
Name: sorting nexin 5 pseudogene 2
RGD ID: 5131807
HGNC Page HGNC:41513
Description: INTERACTS WITH isobutanol
Type: pseudo
RefSeq Status: INFERRED
Related Functional Gene: SNX5  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812101,066,607 - 101,070,000 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712101,460,385 - 101,463,778 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361299,984,643 - 99,987,417 (+)NCBIBuild 36Build 36hg18NCBI36
Celera12101,125,731 - 101,129,128 (+)NCBICelera
Cytogenetic Map12q23.1NCBI
HuRef1298,520,548 - 98,523,944 (+)NCBIHuRef
CHM1_112101,426,553 - 101,429,946 (+)NCBICHM1_1
T2T-CHM13v2.012101,028,307 - 101,031,700 (+)NCBIT2T-CHM13v2.0
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
isobutanol  (EXP)

References

Genomics


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559125SPSL2_HSerum P-selectin level QTL 2 (human)2.59Serum P-selectin level1289897665115897665Human
1643258BW205_HBody weight QTL 205 (human)4.080.00001Body fat amountpercent body fat1296630114122630114Human
1643264BW195_HBody weight QTL 195 (human)0.0151Body weightBMI1289897665115897665Human
1357387BW58_HBody weight QTL 58 (human)2.30.0001Body weightfat free mass after exercise training1289438856115438856Human
1358827MULTSCL22_HMultiple sclerosis susceptibility QTL 22 (human)Multiple sclerosis susceptibility1289897665115897665Human

Markers in Region
SHGC-64282  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372017,922,369 - 17,922,584UniSTSGRCh37
GRCh3712101,463,430 - 101,463,648UniSTSGRCh37
Build 361299,987,561 - 99,987,779RGDNCBI36
Celera2017,996,916 - 17,997,131UniSTS
Celera12101,128,778 - 101,128,996RGD
Cytogenetic Map20p11UniSTS
Cytogenetic Map12q23.1UniSTS
HuRef2017,885,239 - 17,885,454UniSTS
HuRef1298,523,594 - 98,523,812UniSTS


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XR_015542
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
Build 361299,984,643 - 99,987,417 (+)NCBI Archive

Additional Information

Database Acc Id Source(s)
COSMIC SNX5P2 COSMIC
GTEx SNX5P2 GTEx
HGNC ID HGNC:41513 ENTREZGENE
Human Proteome Map SNX5P2 Human Proteome Map
NCBI Gene 728467 ENTREZGENE