TAMALIN-AS1 (TAMALIN antisense RNA 1) - Rat Genome Database

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Gene: TAMALIN-AS1 (TAMALIN antisense RNA 1) Homo sapiens
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Symbol: TAMALIN-AS1
Name: TAMALIN antisense RNA 1
RGD ID: 1602534
HGNC Page HGNC:32680
Description:
Type: ncrna
RefSeq Status: VALIDATED
Previously known as: GRASP antisense RNA 1; GRASP-AS1; GRASPOS; GRP1-associated scaffold protein opposite strand
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381252,006,250 - 52,007,655 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371252,400,034 - 52,401,439 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map12q13.13NCBI
T2T-CHM13v2.01251,969,821 - 51,971,226 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:12477932  


Genomics

Variants

.
Variants in TAMALIN-AS1
4 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 12q13.12-13.13(chr12:50633888-52851909)x1 copy number loss See cases [RCV000140716] Chr12:50633888..52851909 [GRCh38]
Chr12:51027671..53245693 [GRCh37]
Chr12:49313938..51531960 [NCBI36]
Chr12:12q13.12-13.13		 pathogenic
GRCh38/hg38 12q13.12-13.13(chr12:50122359-53248460)x1 copy number loss See cases [RCV000142033] Chr12:50122359..53248460 [GRCh38]
Chr12:50516142..53642244 [GRCh37]
Chr12:48802409..51928511 [NCBI36]
Chr12:12q13.12-13.13		 pathogenic
GRCh38/hg38 12p13.33-q24.33(chr12:121271-133196807)x3 copy number gain See cases [RCV000139555] Chr12:121271..133196807 [GRCh38]
Chr12:282465..133773393 [GRCh37]
Chr12:100698..132283466 [NCBI36]
Chr12:12p13.33-q24.33		 pathogenic
NM_181711.4(TAMALIN):c.206G>A (p.Arg69His) single nucleotide variant not specified [RCV004324446] Chr12:52007225 [GRCh38]
Chr12:52401009 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_181711.4(TAMALIN):c.160G>A (p.Glu54Lys) single nucleotide variant not specified [RCV004468971] Chr12:52007179 [GRCh38]
Chr12:52400963 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_181711.4(TAMALIN):c.176T>C (p.Leu59Pro) single nucleotide variant not specified [RCV004468972] Chr12:52007195 [GRCh38]
Chr12:52400979 [GRCh37]
Chr12:12q13.13		 uncertain significance
NM_181711.4(TAMALIN):c.7C>T (p.Leu3Phe) single nucleotide variant not specified [RCV004468980] Chr12:52007026 [GRCh38]
Chr12:52400810 [GRCh37]
Chr12:12q13.13		 uncertain significance

Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: NR_146770
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381252,006,250 - 52,007,655 (-)NCBI
T2T-CHM13v2.01251,969,821 - 51,971,226 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC TAMALIN-AS1 COSMIC
GTEx TAMALIN-AS1 GTEx
HGNC ID HGNC:32680 ENTREZGENE
Human Proteome Map TAMALIN-AS1 Human Proteome Map
NCBI Gene 692159 ENTREZGENE
RNAcentral URS0000BC446D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-18 TAMALIN-AS1  TAMALIN antisense RNA 1  GRASP-AS1  GRASP antisense RNA 1  Symbol and/or name change 5135510 APPROVED
2017-12-05 GRASP-AS1  GRASP antisense RNA 1  GRASPOS  GRP1-associated scaffold protein opposite strand  Symbol and/or name change 5135510 APPROVED