D9Rat110 Marker Search Result - Rat Genome Database

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Marker: D9Rat110

Symbol: D9Rat110
Previously known as: R0245-A09; oxsts7495; 
RGD ID: 41600
Expected Size: 174 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2995,410,711 - 95,410,867 (+)MAPPERmRatBN7.2
Rnor_6.09102,531,710 - 102,531,865NCBIRnor6.0
Rnor_5.09102,147,849 - 102,148,004UniSTSRnor5.0
RGSC_v3.4994,217,517 - 94,217,673RGDRGSC3.4
RGSC_v3.4994,217,518 - 94,217,673UniSTSRGSC3.4
Celera992,908,963 - 92,909,118UniSTS
RGSC_v3.1994,426,997 - 94,427,153RGD
SHRSP x BN Map964.7399RGD
SHRSP x BN Map964.7399UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BC/CpbU ; BDIX/Han ; BN-Lx/Cub ; BN/SsNHsd ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
QTLs:   Scl57   Mcs31  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer TGGGTGCTTAATTTTGTTTGTTT
Reverse Primer GCTCCTAACCCATCCAACTTT
 
Template 
CCGATCNGAGGATCCCCACTTTTTGGACTGCCATTTCTTCCTCAGTGTAAATGAGAAAACTTTC
TTCTTTTTATCTGTCTCTTTTTAATCTTCATACAATGGATTTTGCCCTCCTCCATTACCTCCTA
AATCTTTTCTAGCTCCTAACCCATCCAACTTTATTTTTCTTTCTCTCTCTACCTTTATATCTCT
CTTAAACACACACACACACACACACACACACACACACACACACACACACACACACACGCACACA
CACACACACACACTGCACACAAAAGTAAAACTCAAAACAAACAAAATTAAGCACCCACCCTCCC
CACGTGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATC
CGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATG
AGTGAGCTAACTCACATTAATTGCGTTGCGCTCATGCNCGCTTTCCAGTCGGGAAACTGTCGTG
TCAGCTGNATTAATGAATCGGCACGGCGGGGAGAGGGGTTGGTTNGGGGCAGGGTGGTNNCTTT
CACAGTGAGCGGGNACANTGATTGNNAACGCTGNCTGAAATTGCACAGGGC

Region

Nucleotide Sequences
GenBank Nucleotide CH473997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302920 UniSTS