D10Rat103 Marker Search Result - Rat Genome Database

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General

Marker: D10Rat103

Symbol:

D10Rat103

Previously known as:

oxsts5898; R0068-D08;

RGD ID:

38196

Expected Size:

129 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source
RGSC_v3.1	4	38,450,251 - 38,450,595	RGD
RH 2.0 Map	10	40.3	RGD
SHRSP x BN Map	10	5.71	RGD
FHH x ACI Map	10	7.88	RGD

Is Marker For:

Strains: ACI/N ; AVN/Orl ; BBDR/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines
5.	RH Map Project	RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6.	A high density integrated genetic linkage and radiation hybrid map of the laboratory rat	Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence


Forward Primer	ATGCGCCACACTAGACACAG
Reverse Primer	GACAGGTGGGCTAGAAGAACA

Template	ATGCTGCAGGTCGACTCTAGAGGATCCCCTTATTTTTGTACCTGTATTGTTTTAAATTGGATTC GTCAAAGAATAAAATGAAAATTCTTGGCTAATCATTTGGTCCCCACTATCTTTCATCCCTTGCT TCCTTTTAACAGTATTTTATTAATTATTTGAGAATGTAATATAATAAATATGTTTGTCTTAGGG ACTTATTGCTGTGAAGAGACACAAGACCAAGGCAATTCTTAAAAAGAAAACATTTAATTGAGGC TGGCCTACCGTTTCAGAGGTCAGGCAGGTTAGTGCATGTGTATCTTAAACTATGCTCTAAGAAA GTATAAAATATCTATTGGGAGTGTATTATATTATCATCATTGTGAGAAGCTTACTTCCAAGGGC TGGGTCCTGGAACAAGTTAAATTATGACTTAGACAGGTGGGCTAGAAGAACATTTCAGGGTGGT GTGTGTGTGTGTGTGTGTGTGTGTGTGTACAAGTCTGTGATCTCAGTCCTTGNGAGGCTGANCA GAAGATATGAGTCTGTGTCTAGTGTGGCGCATNCATNCTGCTCAAAACCAACC

Strain Variation

Strain, Expected Size(s)

ACI/N	155
AVN/Orl	147
BBDR/Rhw	134
BC/CpbU	134
BDIX/Han	147
BDVII/Cub	127
BN-Lx/Cub	127
BN/SsNHsd	127
BP/Cub	147
BUF/Pit	134
COP/OlaHsd	153
DON/Melb	127

F344/Pit	127
FHH/Eur	134
GH/Omr	155
GK/KyoSwe	153
IS/Kyo	147
LE/Mol	134
LEW/Pit	134
LH/Mav	155
LN/Mav	155
LOU/CHan	127
M520/N	127
MHS/Gib	134

MNRA/N	127
MNS/Gib	134
MR/Pit	127
NEDH/K	134
NP9	134
ODU/N	134
OKA/Wsl	155
OM/Ztm	127
P5C	134
PVG/Pit	127
SD/Rij	155
SHR/OlaHsd	153

SHRSP/Riv	153
SR/Jr	155
SS/Jr	155
WAG/RijKyo	127
WF/Pit	134
WIST/Nhg	134
WKY/OlaHsd	134
WN/N	127
WTC/Kyo	134

Region

Nucleotide Sequences

Additional Information

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D10Rat103