D12Rat50 Marker Search Result - Rat Genome Database

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Marker: D12Rat50

Symbol: D12Rat50
Previously known as: oxsts6103; R0067-B12; 
RGD ID: 38108
Expected Size: 244 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21233,959,268 - 33,959,512 (+)MAPPERmRatBN7.2
Rnor_6.01239,421,623 - 39,421,866NCBIRnor6.0
Rnor_5.01241,309,309 - 41,309,552UniSTSRnor5.0
RGSC_v3.41235,143,118 - 35,143,361UniSTSRGSC3.4
RGSC_v3.41235,143,117 - 35,143,361RGDRGSC3.4
Celera1235,632,429 - 35,632,672UniSTS
RGSC_v3.11235,006,506 - 35,006,749RGD
RH 3.4 Map12598.2RGD
RH 3.4 Map12598.2UniSTS
RH 2.0 Map12454.9RGD
FHH x ACI Map1234.65RGD
Cytogenetic Map12q16UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
Genes:   Ift81   LOC690233  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer GTCCAGGAAGACGACCCTCT
Reverse Primer CTGCAAAGGCTACACAGCAA
 
Template 
AGCTGCTGCTGCAGGTCGACTCTAGAGGATCCCCCCTGCAAAGGCTACACAGCAAGACCTGTTT
TAAAAGGAGTGTGTGTGTGTGTGTGTGTGTCTGTGTCTATGTCTGTGTCTGTGTGCACGCGTGC
ATGTGCCTGTGTGTAGTAAGATGCTCATGGCTCACTCTACATCTTGAGGGAAACAGTATCTTTT
TTCATAGTTTTTAACTGAGAAAGCATTGAGATAACTCTGTCTTGTCCAACTCATCTTTTCTAGT
TTAAGAGGGTCGTCTTCCTGGACAGCCCAGGCTGGGTACCGAGCTCGAATTCGTAATCATGGTC
ATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGC
ATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCAC
TGCCCGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGNGGG
GAGAGGCGGTTTGCGTATTGNGCGCCAGGGTGGTTTTTCTTTTCACCAGTGAGACGGGCAACAC
TGATTGNCTTNACGNTGGCCATGAGAGAGTTGCANAAGNGTCANCTGGTTTGCCCACAC

Region

Nucleotide Sequences
GenBank Nucleotide DH617946 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 373066 UniSTS
  690233 UniSTS