D10Rat125 Marker Search Result - Rat Genome Database

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Marker: D10Rat125

Symbol: D10Rat125
Previously known as: oxsts8664; R0064-A12; 
RGD ID: 37914
Expected Size: 237 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21045,779,006 - 45,779,243 (+)MAPPERmRatBN7.2
Rnor_6.01047,376,968 - 47,377,204NCBIRnor6.0
Rnor_5.01047,149,273 - 47,149,509UniSTSRnor5.0
RGSC_v3.41047,250,143 - 47,250,380RGDRGSC3.4
RGSC_v3.41047,250,144 - 47,250,380UniSTSRGSC3.4
Celera1045,029,969 - 45,030,205UniSTS
RGSC_v3.11047,263,766 - 47,264,003RGD
FHH x ACI Map1039.32RGD
FHH x ACI Map1039.32UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AGTGTGTCTGAGGTTGTCAGGA
Reverse Primer TAGCCCTGTCAATCAGGGAG
 
Template 
CCCCCCCCCAGCCCCCCCCACCCCCNCGANGCCAGTGCNCACNNCCAGTGCAAGCTTGCATGCT
GCAGGTCGACTCTAGAGGATCCCCCTTAGAGCACACCTCAACTGTGTCCGTATGGTGAGACTTA
CTGACTAGCCCTGTCAATCAGGGAGGTCAGTTTTCTTCAAGGGACACCTGCCTTCAGTAGGACC
TAATCTGACCTCTATGATTGGTCCTCCAACATAGTCTCAAAAACTAAATTTGATCCCTAGACTT
ACAAAGCACACACACACACACACACACACACACACACACACACACACACACACACCACAACCAT
TTTGTTTTACTTTCTAACAGATCAAGAATCCTGACAACCTCAGACACACTGAGGGGTACCGAGC
TCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCAC
ACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCAC
ATTAATTGCGTTGCGCTCACTGCCCG

Region

Nucleotide Sequences
GenBank Nucleotide CH473948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information