D14Rat110 Marker Search Result - Rat Genome Database

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General

Marker: D14Rat110

Symbol:

D14Rat110

Previously known as:

oxsts9528; R0043-B01;

RGD ID:

36564

Expected Size:

318 (bp)

Position

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	14	104,365,308 - 104,365,626 (+)	Marker Load Pipeline
mRatBN7.2	14	100,164,261 - 100,164,579 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	110,419,380 - 110,419,697	NCBI	Rnor6.0
Rnor_5.0	14	110,119,134 - 110,119,451	UniSTS	Rnor5.0
RGSC_v3.4	14	107,119,264 - 107,119,581	UniSTS	RGSC3.4
RGSC_v3.4	14	107,119,263 - 107,119,581	RGD	RGSC3.4
Celera	14	99,100,981 - 99,101,298	UniSTS
RGSC_v3.1	14	107,138,474 - 107,138,792	RGD
FHH x ACI Map	14	82.27	RGD
FHH x ACI Map	14	82.27	UniSTS

Is Marker For:

Strains: AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; ODU/N ; OKA/Wsl ; OM/Ztm ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo
Genes: S100a11-ps2 LOC100366031

Annotation

References - curated

#	Reference Title	Reference Citation
1.	Data downloaded from Wellcome Trust, University of Oxford	Data downloaded from Wellcome Trust, University of Oxford
2.	Rat Genetic Map Data	Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3.	Electronic Transfer of SSLP Data	Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4.	UniSTS Pipeline	RGD automated pipelines

Strains and Sequence

Sequence


Forward Primer	AACATTGTCTTGCTTAGCCTCA
Reverse Primer	CTCCACCCACACACCACG

Strain Variation

Strain, Expected Size(s)

AVN/Orl	280
BBDP/Rhw	280
BBDR/Rhw	280
BC/CpbU	282
BDIX/Han	254
BDVII/Cub	280
BN-Lx/Cub	320
BN/SsNHsd	320
BP/Cub	280
BUF/Pit	268
COP/OlaHsd	254
DA/PitN	266

DON/Melb	280
F344/Pit	280
FHH/Eur	290
GH/Omr	290
GK/KyoSwe	288
IS/Kyo	280
LE/Mol	294
LEW/Pit	290
LH/Mav	280
LN/Mav	280
LOU/CHan	254
M520/N	280

MHS/Gib	290
MNR/N	280
MNRA/N	284
MNS/Gib	288
MR/Pit	280
NEDH/K	280
ODU/N	280
OKA/Wsl	280
OM/Ztm	280
PVG/Pit	280
SD/Rij	294
SHR/OlaHsd	280

SHRSP/Riv	254
SR/Jr	280
SS/Jr	288
WAG/RijKyo	288
WF/Pit	280
WIST/Nhg	280
WKY/OlaHsd	280
WN/N	280
WTC/Kyo	254

Region

Nucleotide Sequences


GenBank Nucleotide	JH618236.1	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	62398852	107398852	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	59848686	104848686	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	60854936	105854936	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	74255551	109089856	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	59848686	104848686	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	74255551	109089856	Rat

Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	100361648	UniSTS
	100366031	UniSTS

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Marker: D14Rat110