D13Rat32 Marker Search Result - Rat Genome Database

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Marker: D13Rat32

Symbol: D13Rat32
Previously known as: oxsts6138; R037-A10; R0037-A10; 
RGD ID: 36506
Expected Size: 108 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21374,862,117 - 74,862,225 (+)MAPPERmRatBN7.2
Rnor_6.01380,403,559 - 80,403,666NCBIRnor6.0
Rnor_5.01385,295,639 - 85,295,746UniSTSRnor5.0
RGSC_v3.41378,189,125 - 78,189,379RGDRGSC3.4
RGSC_v3.41378,189,257 - 78,189,364UniSTSRGSC3.4
Celera1374,612,920 - 74,613,027UniSTS
RGSC_v3.11378,203,445 - 78,203,552RGD
RH 3.4 Map13468.2UniSTS
RH 3.4 Map13468.2RGD
RH 2.0 Map13507.8RGD
SHRSP x BN Map1330.5998RGD
FHH x ACI Map1330.36RGD
Is Marker For: Strains:   AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LN/Mav ; MHS/Gib ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; SS.BN-(D13Got45-D13Rat32)/Mcwi ; SS.BN-(D13Rat130-D13Rat32)/Mcwi ; SS.BN-(D13Hmgc354-D13Rat32)/Mcwi ; SS.BN-(D13Hmgc5885-D13Rat32)/Mcwi ; SS.BN-(D13Mit5-D13Rat32)/Mcwi
QTLs:   Lnnr5   Lnnr6   Alcrsp6   Glom15  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CATGCCTCACCTCCAACAC
Reverse Primer TGGTACAATCTACTCGAGCAGG
 
Template 
GCCTGCAGGTCGACTCTAGAGGATCCCCCTCCTACATGCATAGTGGTACAATCTACTCGAGCAG
GAACACACACACACACACACACACACACACACACACACACACACACACACACTGTGCCCTGGAT
TACTTGCTGCTTGACCCTACCTGCCCTTGGGTGTTGGAGGTGAGGCATGACCCATTNTNTNTNA
GACAGCATCTCTTCTAAATAGCAGTTCCTGGTTGGCTGGCATTGTCTTCGTCAGCAATCCTCGG
TCTTTCTCAGGCAGTCCTCAATTAGATCCTCCTGCAGGAGATGCTTTGCAGGGGTACGAGCTCG
ATTCGTAATCATGGTCATAGTGTTTCT

Region

Nucleotide Sequences
GenBank Nucleotide CH473958 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000243 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100302907 UniSTS
  100303264 UniSTS
  408162 UniSTS
  408163 UniSTS