D1Rat89 Marker Search Result - Rat Genome Database

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Marker: D1Rat89

Symbol: D1Rat89
Previously known as: R0031-D02; oxsts6753; R031-D02; 
RGD ID: 36169
Expected Size: 171 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21257,976,324 - 257,976,495 (+)MAPPERmRatBN7.2
Rnor_6.01279,985,909 - 279,986,079NCBIRnor6.0
Rnor_5.01287,349,660 - 287,349,830UniSTSRnor5.0
RGSC_v3.41265,343,371 - 265,343,617RGDRGSC3.4
RGSC_v3.41265,343,447 - 265,343,617UniSTSRGSC3.4
Celera1253,635,242 - 253,635,412UniSTS
RGSC_v3.11265,554,492 - 265,554,662RGD
RH 3.4 Map11692.3RGD
RH 3.4 Map11692.3UniSTS
RH 2.0 Map11311.6999RGD
SHRSP x BN Map1145.88RGD
Cytogenetic Map1q55UniSTS
Is Marker For: Strains:   ACI/N ; AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LE/Mol ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; SBN.SBH-(D1Rat148-D1Rat89)/Ygl ; FHH.FHH.1BN-(D1Mgh13-D1Rat89)/Mcwi
QTLs:   Hcas5   Rf55   Rf56  
Genes:   Hspa12a  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer CCATTAACCCTAGCCATCAC
Reverse Primer ACTCTGTTCCACCGGTTGAG
 
Template 
TTTAGAGAATCTCCATGCATGGTCTCAAGATAGTTCGGTCCACCAGCTTCCCACACCCCCCAAC
CCCCGCCATGGACTCTGTTCCACCGGTTGAGGTCAGGTCTTGCTTCCTGTCTGATTGTCCTTGC
ACCTGACACGTCACAGGGTTATGAATAGTTGAATGGACTGGTGAATGGATAGACAGAAGAGCAG
ATAGATGTGTGTGTGTGTGTGTGTGTGTGTGTGATGGCTAGGGTTAATGGGGGTACCGAGCGCG
AATTCGTAATCAGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAA
CATACGAGCGNNAAGCATAAAGTGTANAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTA
GTTGCGTTGCGCTCC

Region

Nucleotide Sequences
GenBank Nucleotide CH473986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
NCBI Gene 100303051 UniSTS
  100303227 UniSTS
  307997 UniSTS
  408168 UniSTS