D3Rat56 Marker Search Result - Rat Genome Database

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Marker: D3Rat56

Symbol: D3Rat56
Previously known as: oxsts6984; R027-D10; R0027-D10; 
RGD ID: 35981
Expected Size: 197 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8328,625,339 - 28,625,536 (+)Marker Load Pipeline
mRatBN7.238,227,194 - 8,227,391 (+)MAPPERmRatBN7.2
Rnor_6.032,631,421 - 2,631,617NCBIRnor6.0
Rnor_5.032,612,834 - 2,613,030UniSTSRnor5.0
RGSC_v3.433,577,906 - 3,578,102UniSTSRGSC3.4
RGSC_v3.433,577,905 - 3,578,102RGDRGSC3.4
Celera33,052,299 - 3,052,495UniSTS
RGSC_v3.133,577,811 - 3,578,194RGD
SHRSP x BN Map32.4699UniSTS
SHRSP x BN Map32.4699RGD
FHH x ACI Map32.53RGD
Is Marker For: Strains:   AVN/Orl ; BBDR/Rhw ; BBDP/Rhw ; BC/CpbU ; BDIX/Han ; BDVII/Cub ; BN-Lx/Cub ; BN/SsNHsd ; BP/Cub ; BUF/Pit ; COP/OlaHsd ; DA/PitN ; FHH/Eur ; F344/Pit ; GH/Omr ; GK/KyoSwe ; DON/Melb ; M520/N ; IS/Kyo ; WN/N ; LH/Mav ; LEW/Pit ; LOU/CHan ; LN/Mav ; MHS/Gib ; MNR/N ; MNRA/N ; MNS/Gib ; MR/Pit ; NEDH/K ; NP9 ; ODU/N ; OKA/Wsl ; OM/Ztm ; P5C ; PVG/Pit ; SD/Rij ; SHR/OlaHsd ; SR/Jr ; SHRSP/Riv ; SS/Jr ; WAG/RijKyo ; WF/Pit ; WIST/Nhg ; WKY/OlaHsd ; WTC/Kyo ; BUF.ACI-(D3Rat56-D3Rat83)/Ncc
QTLs:   Arunc3   Kidm53  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines

Strains and Sequence

Sequence
 
Forward Primer AGTGAAGCCATCTTTTGGGG
Reverse Primer CTTGGACTTGACCTGCCACT
 
Template 
CCAGTGCCAAGCTTGCATGCCTGCAGGTCGACTCTAGAGGATCCCCCCAGCCTGATCTACAGAG
TGAGCTCTAGGACAGTCAGGGATACACAGAGAGACCCTGCCTCAAAAACACAAGATGAAAAACT
TTACAAAGCTAGTGAAGCCATCTTTTGGGGGATTGCCAAAGTCAGTCTGTCTGTCTGTCTGTCT
GTCTGTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACACACACA
CATTAGAATTAAAGCTATGGCTTCTGTCACAGATAGAAGTGGCAGGTCAAGTCCAAGCTCTACA
GTGCGTTGGGCAGGTAAGTCTCTACCCATCTTACCTGAATTCCTGCCTCATGTACATTGCATTC
CCGAGGTCCATCTGCCTGGCTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCC
TGTGTGAGATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAA
GCCTGGGGTGCTAATGAGTGAGCTNCTCANNATTGGTTGNC

Region

Nucleotide Sequences
GenBank Nucleotide CH474001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 444898 UniSTS