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Gene: Senp2 (SUMO specific peptidase 2) Rattus norvegicus

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Symbol:

Senp2

Name:

SUMO specific peptidase 2

RGD ID:

708378

Description:

Enables protein domain specific binding activity. Involved in dorsal/ventral axis specification and regulation of protein metabolic process. Predicted to be located in nuclear body. Predicted to be part of nuclear pore. Predicted to be active in nucleus. Predicted to colocalize with PML body. Orthologous to human SENP2 (SUMO specific peptidase 2); PARTICIPATES IN RNA transport pathway; Wnt signaling pathway; INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

Axam; Axin-associating molecule; LOC78973; sentrin-specific protease 2; sentrin/SUMO-specific protease SENP2; SUMO/sentrin specific peptidase 2; SUMO/sentrin specific protease 2; Sumo1/sentrin/SMT3 specific peptidase 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SENP2 (SUMO specific peptidase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Senp2 (SUMO/sentrin specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Senp2 (SUMO specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SENP2 (SUMO specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SENP2 (SUMO specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Senp2 (SUMO specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SENP2 (SUMO specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SENP2 (SUMO specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Senp2 (SUMO specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Senp2 (SUMO specific peptidase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DRC10 (dynein regulatory complex subunit 10)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Senp2 (SUMO/sentrin specific peptidase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	SENP2 (SUMO specific peptidase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	senp2 (SUMO specific peptidase 2)	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	ULP1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ULP1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ulp-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ulp-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32110	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG32110	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Ulp1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)

Related Pseudogenes:

Senp2-ps6

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	92,487,259 - 92,522,795 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	92,485,931 - 92,522,735 (-)	Ensembl				GRCr8
mRatBN7.2	11	78,981,429 - 79,018,274 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	78,981,432 - 79,018,238 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	87,718,539 - 87,752,630 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	80,372,185 - 80,406,276 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	79,432,886 - 79,466,977 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	82,627,973 - 82,664,702 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	82,630,436 - 82,664,630 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	85,721,099 - 85,755,217 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	81,225,720 - 81,259,934 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	77,846,354 - 77,880,450 (-)	NCBI		Celera
RGSC_v3.1	11	81,283,308 - 81,317,523 (-)	NCBI
Cytogenetic Map	11	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

Experimental Liver Cirrhosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,4-methylenedioxymethamphetamine (ISO)

3-isobutyl-1-methyl-7H-xanthine (EXP)

5-aza-2'-deoxycytidine (ISO)

acetamide (EXP)

acetylcholine (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-phellandrene (ISO)

ammonium chloride (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

carbamazepine (ISO)

chlorpyrifos (ISO)

Cuprizon (EXP)

decabromodiphenyl ether (EXP)

dexamethasone (EXP)

ethanol (ISO)

fenofibrate (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

gentamycin (EXP)

glyphosate (ISO)

methylmercury chloride (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

pirinixic acid (ISO)

rac-lactic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

Tributyltin oxide (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP,ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

dorsal/ventral axis specification (IDA)

fat cell differentiation (IEA,ISO,ISS)

heart development (ISO)

labyrinthine layer development (ISO)

mRNA transport (IEA)

negative regulation of DNA damage response, signal transduction by p53 class mediator (ISO)

negative regulation of protein binding (IDA)

negative regulation of protein ubiquitination (IEA,ISO)

negative regulation of signal transduction by p53 class mediator (ISO)

positive regulation of protein phosphorylation (IDA)

positive regulation of protein ubiquitination (IEA,ISO)

positive regulation of transcription by RNA polymerase II (ISO)

protein destabilization (IEA,ISO)

protein desumoylation (IBA,IEA,ISO,ISS)

protein transport (IEA)

proteolysis (IEA)

regulation of DNA endoreduplication (ISO)

regulation of G1/S transition of mitotic cell cycle (ISO)

regulation of macromolecule metabolic process (IEA)

regulation of primary metabolic process (IEA)

regulation of protein metabolic process (IDA)

spongiotrophoblast layer development (ISO)

trophoblast giant cell differentiation (ISO)

Wnt signaling pathway (IEA)

Cellular Component

cytoplasm (IEA,ISO)

cytoplasmic vesicle (ISO)

cytosol (IEA,ISO)

nuclear body (IEA,ISO)

nuclear membrane (IEA)

nuclear pore (IEA,ISO,ISS)

nucleus (IBA,ISO)

PML body (IEA,ISO,ISS)

Molecular Function

cysteine-type peptidase activity (IEA)

deSUMOylase activity (IBA,IEA,ISO,ISS)

hydrolase activity (IEA)

peptidase activity (IEA)

protein binding (ISO)

protein domain specific binding (IPI)

SUMO-specific endopeptidase activity (IEA,ISO,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

RNA transport pathway (IEA)

Wnt signaling pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Inhibition of Wnt signaling pathway by a novel axin-binding protein.	Kadoya T, etal., J Biol Chem 2000 Nov 24;275(47):37030-7.
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
6.	GOA pipeline	RGD automated data pipeline
7.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11896061	PMID:11997515	PMID:12192048	PMID:12419228	PMID:15767674	PMID:16608850	PMID:17428805	PMID:17591783	PMID:19090619	PMID:20194620	PMID:20417598	PMID:21183956
PMID:21965678	PMID:22028379	PMID:29146736	PMID:29535048	PMID:34947973

Genomics

Comparative Map Data

Senp2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	92,487,259 - 92,522,795 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	92,485,931 - 92,522,735 (-)	Ensembl				GRCr8
mRatBN7.2	11	78,981,429 - 79,018,274 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	78,981,432 - 79,018,238 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	87,718,539 - 87,752,630 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	80,372,185 - 80,406,276 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	79,432,886 - 79,466,977 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	82,627,973 - 82,664,702 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	82,630,436 - 82,664,630 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	85,721,099 - 85,755,217 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	81,225,720 - 81,259,934 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	77,846,354 - 77,880,450 (-)	NCBI		Celera
RGSC_v3.1	11	81,283,308 - 81,317,523 (-)	NCBI
Cytogenetic Map	11	q23	NCBI

SENP2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	185,586,295 - 185,633,551 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	185,582,496 - 185,633,551 (+)	Ensembl			hg38	GRCh38
GRCh37	3	185,304,083 - 185,351,339 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	186,786,725 - 186,831,583 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	186,786,732 - 186,831,585	NCBI
Celera	3	183,741,683 - 183,786,630 (+)	NCBI		Celera
Cytogenetic Map	3	q27.2	NCBI
HuRef	3	182,713,166 - 182,758,813 (+)	NCBI		HuRef
CHM1_1	3	185,267,116 - 185,311,866 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	188,402,099 - 188,449,380 (+)	NCBI		T2T-CHM13v2.0

Senp2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	21,828,182 - 21,868,019 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	21,828,234 - 21,868,019 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	22,009,432 - 22,049,269 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	22,009,484 - 22,049,269 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	22,009,557 - 22,049,342 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	21,924,664 - 21,963,132 (+)	NCBI		MGSCv36	mm8
Celera	16	22,576,818 - 22,616,603 (+)	NCBI		Celera
Cytogenetic Map	16	B1	NCBI
cM Map	16	12.98	NCBI

Senp2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	21,969,537 - 22,005,856 (-)	Ensembl
ChiLan1.0	NW_004955420	21,969,537 - 22,005,094 (-)	NCBI	ChiLan1.0	ChiLan1.0

SENP2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	183,447,676 - 183,498,778 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	183,452,388 - 183,503,495 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	182,606,922 - 182,655,518 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	191,083,159 - 191,129,572 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	191,086,488 - 191,129,572 (+)	Ensembl			panPan2	panpan1.1

SENP2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	18,325,373 - 18,357,152 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	18,325,553 - 18,356,192 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	22,411,070 - 22,442,872 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	18,235,175 - 18,266,937 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	18,235,165 - 18,266,935 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	18,270,590 - 18,302,404 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	18,266,749 - 18,298,733 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	18,496,165 - 18,528,163 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Senp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	118,160,861 - 118,198,599 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936578	4,248,244 - 4,290,418 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936578	4,252,718 - 4,290,452 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SENP2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	123,429,995 - 123,471,926 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	123,429,915 - 123,469,913 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	132,967,994 - 133,007,559 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SENP2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	3,805,916 - 3,853,529 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666063	12,558,692 - 12,605,920 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Senp2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	71,068,112 - 71,100,225 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	71,068,112 - 71,100,121 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Senp2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	6,692,062 - 6,729,353 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	631
Count of miRNA genes:	298
Interacting mature miRNAs:	378
Transcripts:	ENSRNOT00000002425
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70208	Niddm22	Non-insulin dependent diabetes mellitus QTL 22	3.61		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	73308487	96070872	Rat
1581565	Pur10	Proteinuria QTL 10		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
4889859	Pur28	Proteinuria QTL 28	19.5	0.001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	11	58928336	99753367	Rat
1549848	Bvd6	Brain ventricular dilatation QTL 6	3.1	0.0001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	79618519	99753367	Rat
10450831	Scl80	Serum cholesterol level QTL 80	4.7	0.01	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	11	90461781	96556255	Rat
10058954	Gmadr7	Adrenal mass QTL 7	2.49	0.0049	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	73850894	99753367	Rat
1300135	Rf19	Renal function QTL 19	3.38		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	11	54415391	96071021	Rat
1354656	Bvd3	Brain ventricular dilatation QTL 3	3.64	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	11	82951028	96351019	Rat
2312566	Glom20	Glomerulus QTL 20	3.6	0.001	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	57754837	96071021	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
724561	Plsm4	Polydactyly-luxate syndrome (PLS) morphotypes QTL 4		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	11	67962184	99753367	Rat
631506	Bp104	Blood pressure QTL 104	2.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	73308315	99753367	Rat
4889521	Gluco62	Glucose level QTL 62	2.82	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	11	68599321	96497754	Rat
7411658	Foco27	Food consumption QTL 27	16.2	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	11	69855943	99753367	Rat
1581572	Uae35	Urinary albumin excretion QTL 35		0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	58272363	96350770	Rat
1300110	Stl7	Serum triglyceride level QTL 7	4.64		blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	11	51071021	96071021	Rat

Markers in Region

RH129168

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	78,982,823 - 78,983,015 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	82,629,368 - 82,629,559	NCBI	Rnor6.0
Rnor_5.0	11	85,720,031 - 85,720,222	UniSTS	Rnor5.0
RGSC_v3.4	11	81,224,652 - 81,224,843	UniSTS	RGSC3.4
Celera	11	77,845,286 - 77,845,477	UniSTS
Cytogenetic Map	11	q23	UniSTS

AW554757

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	179,164,647 - 179,164,781 (+)	MAPPER	mRatBN7.2
mRatBN7.2	11	78,983,168 - 78,983,302 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	82,629,713 - 82,629,846	NCBI	Rnor6.0
Rnor_6.0	2	193,836,197 - 193,836,330	NCBI	Rnor6.0
Rnor_5.0	11	85,720,376 - 85,720,509	UniSTS	Rnor5.0
Rnor_5.0	2	211,031,088 - 211,031,221	UniSTS	Rnor5.0
RGSC_v3.4	2	186,588,690 - 186,588,823	UniSTS	RGSC3.4
RGSC_v3.4	11	81,224,997 - 81,225,130	UniSTS	RGSC3.4
Celera	11	77,845,631 - 77,845,764	UniSTS
Celera	2	171,121,717 - 171,121,850	UniSTS
Cytogenetic Map	11	q23	UniSTS
Cytogenetic Map	2	q34	UniSTS

RH141486

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	78,981,484 - 78,981,669 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	82,628,029 - 82,628,213	NCBI	Rnor6.0
Rnor_5.0	11	85,718,692 - 85,718,876	UniSTS	Rnor5.0
RGSC_v3.4	11	81,223,313 - 81,223,497	UniSTS	RGSC3.4
Celera	11	77,843,947 - 77,844,131	UniSTS
RH 3.4 Map	11	651.2	UniSTS
Cytogenetic Map	11	q23	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	164	91	90	59	92	59	6	356	192	11	143	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_023989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088632	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AF260129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211835	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212134	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222500	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000002425 ⟹ ENSRNOP00000002425

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	92,487,411 - 92,522,735 (-)	Ensembl
mRatBN7.2 Ensembl	11	78,981,432 - 79,018,238 (-)	Ensembl
Rnor_6.0 Ensembl	11	82,630,436 - 82,664,554 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087105 ⟹ ENSRNOP00000071258

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	92,485,931 - 92,522,570 (-)	Ensembl
mRatBN7.2 Ensembl	11	78,981,432 - 79,018,022 (-)	Ensembl
Rnor_6.0 Ensembl	11	82,636,983 - 82,664,630 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098721 ⟹ ENSRNOP00000081876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	78,981,432 - 79,016,674 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000112722 ⟹ ENSRNOP00000091248

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	11	78,981,432 - 79,014,877 (-)	Ensembl

RefSeq Acc Id:

NM_023989 ⟹ NP_076479

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	92,488,391 - 92,522,640 (-)	NCBI
mRatBN7.2	11	78,983,892 - 79,018,143 (-)	NCBI
Rnor_6.0	11	82,630,436 - 82,664,554 (-)	NCBI
Rnor_5.0	11	85,721,099 - 85,755,217 (-)	NCBI
RGSC_v3.4	11	81,225,720 - 81,259,934 (-)	RGD
Celera	11	77,846,354 - 77,880,450 (-)	RGD

Sequence:

show sequence

CGCTGCTGCTCAGGCCTGGAATGTACAGATGGCTGACTAAGGTTCTCGGCACCATTCTTCGCTT
GTGTGAGCGGCCCGCGCCCGGGGCCCGCGCCCTGCTCAAGAGGCGGCGCTCCAGCAGCTCTCTG
TTTTCTACTGCAGTGGACACTGATGAAATCCCAGCTAAAAGACCAAGACTAGATTGCTTCATTC
ACCAAGTGAAGAACAGTCTCTACAATGCGGCCAGCTTATTTGGATTCCCATTCCAGCTGACCAC
CAAACCCATGGTGTCTTCTGCTTGTAATGGAACACGGAATGTGGCCCCTTCAGGAGAGGTGTTC
TCGAACTCTCCCTCCTGTGAACTGACGACTTCTGGATCCTGCAGCAGCATGCTGAAGCTGGGTA
ATAAATCTCCTAATGGAATAAGTGACTATCCAAAGATCAGAGTGACAGTGGCCCGAGATCAGCC
ACGGAGAGTCCTGCCTTCCTTTGGTTTTACATTGAAATCAGAAGGCTATAATAGAAGACCAAGT
GGCCGTCGCCATAGCAAAAGCAATCCAGAGAGTTCCTTACCGTGGAAACCTCAGGAGCAAGGTG
TAACAGAGATGATTTCTGAAGAGGGTGGCAAGGGTGCAAGGCGTCCCCATTGCACCGTGGAGGA
GGGTGTCCAAAAGGACGAAAGAGAAAAATACCTAAAGTTATTGGAGCGTCTTAAAGAGGGTGCT
CACGGAAGCACTTTTCCTCCTGCAGTTTCACATCATAGTTCTCAGAGAACGCAGATGGACACAT
TAAAGACCAAAGGCTGGATGGAAGAACAGAATCATGGAGTCAGAACAACCCATTTGGTTCCCAA
ACAGTATAGAGTTGTTGAAACAAGAGGACCTCTCTGTTCAGTGAGAAGTGAAAAGAGGTATTCA
AAAGGAAAAGCTGACACAGAGAAGGTGGTGGGACTCCGATTTGAAAAGGACGGTACAAGAGGAC
ACCAGTTGGAGCCTGATCTGTCAGAAGAAGTGTCTGCCCGGCTTCGCCTGGGAAGTGGAAGCAA
TGGCCTACTCAGAAGGAAAATATCAGTGCTTGAGGCAAAGGAAAAGAACTTCCCAAGCAAAGAG
AAGGACAGAAGAACAGAAGATCTCTTTGAACTTACAGAGGACATGGAAAAGGAAATCAGTAATG
CCCTGGGCCATGGTCCTCCAGATGAGATTTTGAGCAGCGCTTTCAAGTTACGAATCACCCGTGG
AGATATCCAGACCTTAAAGAACTATCACTGGCTCAATGATGAGGTCATTAATTTTTATATGAAT
CTTTTAGTGGAGAGGAGTAAAAAGCAAGGCTACCCAGCACTTCATGCACTCAGTACATTCTTCT
ATCCTAAATTAAAGTCTGGAGGTTACCAAGCAGTGAAAAGATGGACCAAAGGGGTGAATCTCTT
CGATCAAGAACTTGTTCTGGTTCCTATTCATCGGAAGGTACATTGGAGCCTGGTGGTGATGGAC
CTAAGAAAAAAGTGTCTTAAATATCTGGATTCTATGGGACAAAAAGGCCACAGGATCTGTGAGA
TTCTTCTTCAGTATTTACAGGACGAAAGCAAGACCAAAAGAAATACAGATCTCAATCTCTTAGA
GTGGACCCACTACAGCATGAAGCCACATGAGATTCCTCAACAGTTGAATGGGAGTGATTGTGGA
ATGTTTACTTGTAAATACGCAGATTATATTTCTAGGGACAAACCTATCACATTCACTCAGCACC
AGATGCCTCTCTTCCGGAAGAAGATGGTGTGGGAAATCCTTCACCAGCAGTTGCTGTGACAATG
CCCCGCCTGGTCTTCT

hide sequence

RefSeq Acc Id:

XM_008768805 ⟹ XP_008767027

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	92,487,259 - 92,522,795 (-)	NCBI
mRatBN7.2	11	78,981,429 - 79,018,274 (-)	NCBI
Rnor_6.0	11	82,627,973 - 82,664,702 (-)	NCBI

Sequence:

show sequence

GAGTCCTCCCATAGCCCAGGGAACGTTGAATCTGAGGGCCCTCTGATGGCGTCACAAACCCGCG
CCTGATCCTGGCTACGGCCGAAGCGGCGAAGGCGGCAGCGGCGGCGACAGCTCTGGGGTTCGCG
TCTCGGGGTGTGTCGGCCGCCGCTGCTGCTCAGGCCTGGAATGTACAGATGGCTGACTAAGGTT
CTCGGCACCATTCTTCGCTTGTGTGAGCGGCCCGCGCCCGGGGCCCGCGCCCTGCTCAAGAGGC
GGCGCTCCAGCAGCTCTCTGTTTTCTACTGCAGTGGACACTGATGAAATCCCAGCTAAAAGACC
AAGACTAGATTGCTTCATTCACCAAGTGAAGAACAGTCTCTACAATGCGGCCAGCTTATTTGGA
TTCCCATTCCAGCTGACCACCAAACCCATGGTGTCTTCTGCTTGTAATGGAACACGGAATGTGG
CCCCTTCAGGAGAGGTGTTCTCGAACTCTCCCTCCTGTGAACTGACGACTTCTGGATCCTGCAG
CAGCATGCTGAAGCTGGGTAATAAATCTCCTAATGGAATAAGTGACTATCCAAAGATCAGAGTG
ACAGTGGCCCGAGATCAGCCACGGAGAGTCCTGCCTTCCTTTGGTTTTACATTGAAATCAGAAG
GCTATAATAGAAGACCAAGTGGCCGTCGCCATAGCAAAAGCAATCCAGAGAGTTCCTTACCGTG
GAAACCTCAGGAGCAAGGTGTAACAGAGATGATTTCTGAAGAGGGTGGCAAGGGTGCGAGGCGT
CCCCATTGCACCGTGGAGGAGGGTGTCCAAAAGGACGAAAGAGAAAAATACCTAAAGTTATTGG
AGCGTCTTAAAGAGGGTGCTCACGGAAGCACTTTTCCTCCTGCAGTTTCACATCATAGTTCTCA
GAGAACGCAGATGGACACATTAAAGACCAAAGGCTGGATGGAAGAACAGAATCATGGAGTCAGA
ACAACCCATTTGGTTCCCAAACAGTATAGAGTTGTTGAAACAAGAGGACCTCTCTGTTCAGTGA
GAAGTGAAAAGAGGTATTCAAAAGGAAAAGCTGACACAGAGAAGGTGGTGGGACTCCGATTTGA
AAAGGACGGTACAAGAGGACACCAGTTGGAGCCTGATCTGTCAGAAGAAGTGTCTGCCCGGCTT
CGCCTGGGAAGTGGAAGCAATGGCCTACTCAGAAGGAAAATATCAGTGCTTGAGGCAAAGGAAA
AGAACTTCCCAAGCAAAGAGAAGGACAGAAGAACAGAAGATCTCTTTGAACTTACAGAGCATCG
TCTAATTCAGGACATGGAAAAGGAAATCAGTAATGCCCTGGGCCATGGTCCTCCAGATGAGATT
TTGAGCAGCGCTTTCAAGTTACGAATCACCCGTGGAGATATCCAGACCTTAAAGAACTATCACT
GGCTCAATGATGAGGTCATTAATTTTTATATGAATCTTTTAGTGGAGAGGAGTAAAAAGCAAGG
CTACCCAGCACTTCATGCACTCAGTACATTCTTCTATCCTAAATTAAAGTCTGGAGGTTACCAA
GCAGTGAAAAGATGGACCAAAGGGGTGAATCTCTTCGATCAAGAACTTGTTCTGGTTCCTATTC
ATCGGAAGGTACATTGGAGCCTGGTGGTGATGGACCTAAGAAAAAAGTGTCTTAAATATCTGGA
TTCTATGGGACAAAAAGGCCACAGGATCTGTGAGATTCTTCTTCAGTATTTACAGGACGAAAGC
AAGACCAAAAGAAATACAGATCTCAATCTCTTAGAGTGGACCCACTACAGCATGAAGCCACATG
AGATTCCTCAACAGTTGAATGGGAGTGATTGTGGAATGTTTACTTGTAAATACGCAGATTATAT
TTCTAGGGACAAACCTATCACATTCACTCAGCACCAGATGCCTCTCTTCCGGAAGAAGATGGTG
TGGGAAATCCTTCACCAGCAGTTGCTGTGACAATGCCCCGCCTGGTCTTCTAGTTGCTGGTGGT
TCTTTCATGGATGTTTCCATATACCTCATGCATTGTGGGTTGAAAAGTCCCCATCATTTCTCTT
CTCTCACAGGTACTGAGCTCTCCAGAGTGCATGGAGGCCTCTCTACAGTGGCCCTGACGAGAGG
TGTGGAGGGGCTGCTTGCAGCCCTGTTTGTAAGGCTGTGCCTGCTCAGAGCCCTGGACTGTTCG
CCCCATACAAGGACACATACTAATTAATGTTTTGTTTTAAGGCGTTATTTCCATATGAATGTGG
GAAATGCAGGATTTGTTATATGAATTGTTCTCTGTGTGTTCACACATATTCACTCACTCATTTG
CAAACACTGGGCAGTGCCCTTTCCCACTGCTCTTTTATAATTAGCTATAAATAATTTGTTTGGA
CTATTTATTTCTGAAAAGAATGTTAATCAAACTGCCACTCCCTGCTGCAGAGATGTCCGCAGGG
GGAGGGAGGTGTTCGCCAGCTTCTCTAGTGCCGGGAACTGAACGCACAGTTAAGGTTCTCGTTT
AAGGCTTGGAAATGCCAGAAGAAATGATGATGCTCTGTTGTAGGGGTCTGGCTGCCTTTAGAGA
GCCTGATGCTATGACACGGGCACAGTTCATGGAAAGTGGCCAAGGAACGTGGTCCGTGAGTCCT
CACAGCAGGGCACACTCATCTTCAAGACTTTCTTCTCTAGAACTGAAGTAGCTTGGCTTCCTCA
TGAAACTGGATTCAAAGTAACTGTGACCATAAATGTCAAACCCGAGGTTGGTGAGCCTGCGCTC
ACAGTGGTAAGGGCTGGCCTGAGCTGTATTTCAGGAGATGCTCCTCAATTTAAGCCTATTTTTC
CTCAGAGTTTTTTTAAATATATATGAAGCTGAATTAAGTCTGGCTCAGCAGCATGCTCTACTCC
AGCCCCACTGAGCCTTCGCAGAGATTCGTGCTCGGCTCTGAGGTTGCCGGGTTTACAGTCATCT
ATTTTGCATATGAAAGTTTGTATTTAACTCTTTTGTTCATTAAAAATCTTACAGATGTGGTTAT
GCATTTTTAATTTCAGAAAGTTGGTCAGAGCATATTTTGCAAGATCTAGTGCCTAGTGTTGCTT
TTATGATGTAATAAAAGACTGTCTGGCAGAACCTAGCAGTATGTTGATAATTTTTCCTCTTTTC
TCTGCTTCAACCTTCCAAACTTGTTCTGGTTAAAAAAATAAAAATTAGAAAAGCTGCTCACATG
TTAGATACAAATGGACACATCTGCTCTCTCTCGGAAAGTCCGGGCAGCTGATCAGAGGTGGTAG
CTGTTGAAACCTGTTTTAACCTGTTTTCCGTGAGACTTGAAGTGGCCTTGGTCATGGTAGCTGG
GCTGTGATATTGACCGAAGTGGCTGAGCCTACCACCCAGACCAGGTTAGCCAGACATTCAGAGG
AAACCATGCTGTCTCCTCCAAGCAGACTACACGGGGACCCCTTCCTTTAGCCTAGACCCCCTAG
GAACTGTGCCACTGATGCTGCCCAGATCAGGCAGCTGGTCTAGCCAGAGAGCCCAGAAGTTGAC
CATGTCTACACTACTGAAAACTGGGAGCTAGAATTCTGCCTGAGAATTTCTGACCCAGGCCTAT
GGAAAGCAGTGTGACCTGAGTGTGACTCCCTAGTACCACACTGGAAGGTGAAAACGACTCCCTA
CACTGTCCTCAGACTCCGTACTTGCACACACCAACAGATGGACCAAAGAGTAATAAGCAAGTGC
ACTTTAAAGGAATTTTAAGGGCTTGGATAGGTTTGTTTCTGTTGGCTCAGTCCTGCTTAGATGG
CCCAGGTGAGATTCTGTAGCTAATGTGGCGGCTGATGGATATCCTCAAGCTTGCCCTGTGTGTG
CTCTTGACAGGTGTTCTTAAGCTTCAGAAAGGAAGATGGAGAGATGGTTCAGTGGTGAGGCCAG
AATTGACTTTTAGTCTCAGGCCAGCACATCCATAGCAAACAAGCTGGGCTCCTGCTCACAACGA
TAGTCCCAGTTCCCAGCGAAGAGAGGCAGGGTGATTAGACCCTTCCTCAGGATCAGGAGGAATG
ACAGGACAACCTCGCCTCCCTCGGCCTCGCTCATCCGCTTCAGGTGCATACGCCGCGAGACTTT
TACAGAACACGGTAAAACACGCACGTAGAGAACGTTAAACTACGACGCACTGCTTTACCTCAGT
TTGTGACTCCAAGCTCAGATGCCGGAAGCCATGGCTCTCAAGGCACTGATGTCTCTCTCTGTAC
AAACAAGTGTGTGGGTAACAGAATTGTTACATTCAGCTTGTGAGAAGAGTAAATAAGTGATAAA
CAGCCCTTGGTGTAACTAGTGAGTCAGCAAAATTAAAGCAAGTAACGTTTTTTGTGGAATTTCA
ACTTTGGAACCTGAAAGAAATGTTGCATTGTTCTGTTTAGCCCATAGTCTCTCTAAAAATGAGT
AAAAATTTAAGAAACACA

hide sequence

RefSeq Acc Id:

XM_039088632 ⟹ XP_038944560

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	92,487,259 - 92,522,473 (-)	NCBI
mRatBN7.2	11	78,981,429 - 79,017,969 (-)	NCBI

RefSeq Acc Id:

XM_063270771 ⟹ XP_063126841

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	92,487,259 - 92,522,515 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_076479	(Get FASTA)	NCBI Sequence Viewer
	XP_008767027	(Get FASTA)	NCBI Sequence Viewer
	XP_038944560	(Get FASTA)	NCBI Sequence Viewer
	XP_063126841	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAG34653	(Get FASTA)	NCBI Sequence Viewer
	EDL78045	(Get FASTA)	NCBI Sequence Viewer
	EDL78046	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000002425
	ENSRNOP00000071258
GenBank Protein	Q9EQE1	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_076479 ⟸ NM_023989

- UniProtKB:

Q9EQE1 (UniProtKB/Swiss-Prot), A6JS62 (UniProtKB/TrEMBL), A0A8I5ZTE8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYRWLTKVLGTILRLCERPAPGARALLKRRRSSSSLFSTAVDTDEIPAKRPRLDCFIHQVKNSL
YNAASLFGFPFQLTTKPMVSSACNGTRNVAPSGEVFSNSPSCELTTSGSCSSMLKLGNKSPNGI
SDYPKIRVTVARDQPRRVLPSFGFTLKSEGYNRRPSGRRHSKSNPESSLPWKPQEQGVTEMISE
EGGKGARRPHCTVEEGVQKDEREKYLKLLERLKEGAHGSTFPPAVSHHSSQRTQMDTLKTKGWM
EEQNHGVRTTHLVPKQYRVVETRGPLCSVRSEKRYSKGKADTEKVVGLRFEKDGTRGHQLEPDL
SEEVSARLRLGSGSNGLLRRKISVLEAKEKNFPSKEKDRRTEDLFELTEDMEKEISNALGHGPP
DEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERSKKQGYPALHALSTFFYPKLKSG
GYQAVKRWTKGVNLFDQELVLVPIHRKVHWSLVVMDLRKKCLKYLDSMGQKGHRICEILLQYLQ
DESKTKRNTDLNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQMPLFRK
KMVWEILHQQLL

hide sequence

RefSeq Acc Id:	XP_008767027 ⟸ XM_008768805
- Peptide Label:	isoform X1
- UniProtKB:	A0A8L2PZM6 (UniProtKB/TrEMBL), A0A8I5ZTE8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MYRWLTKVLGTILRLCERPAPGARALLKRRRSSSSLFSTAVDTDEIPAKRPRLDCFIHQVKNSL YNAASLFGFPFQLTTKPMVSSACNGTRNVAPSGEVFSNSPSCELTTSGSCSSMLKLGNKSPNGI SDYPKIRVTVARDQPRRVLPSFGFTLKSEGYNRRPSGRRHSKSNPESSLPWKPQEQGVTEMISE EGGKGARRPHCTVEEGVQKDEREKYLKLLERLKEGAHGSTFPPAVSHHSSQRTQMDTLKTKGWM EEQNHGVRTTHLVPKQYRVVETRGPLCSVRSEKRYSKGKADTEKVVGLRFEKDGTRGHQLEPDL SEEVSARLRLGSGSNGLLRRKISVLEAKEKNFPSKEKDRRTEDLFELTEHRLIQDMEKEISNAL GHGPPDEILSSAFKLRITRGDIQTLKNYHWLNDEVINFYMNLLVERSKKQGYPALHALSTFFYP KLKSGGYQAVKRWTKGVNLFDQELVLVPIHRKVHWSLVVMDLRKKCLKYLDSMGQKGHRICEIL LQYLQDESKTKRNTDLNLLEWTHYSMKPHEIPQQLNGSDCGMFTCKYADYISRDKPITFTQHQM PLFRKKMVWEILHQQLL hide sequence

Ensembl Acc Id:

ENSRNOP00000002425 ⟸ ENSRNOT00000002425

Ensembl Acc Id:

ENSRNOP00000071258 ⟸ ENSRNOT00000087105

RefSeq Acc Id:	XP_038944560 ⟸ XM_039088632
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I5ZTE8 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000081876 ⟸ ENSRNOT00000098721

Ensembl Acc Id:

ENSRNOP00000091248 ⟸ ENSRNOT00000112722

RefSeq Acc Id:	XP_063126841 ⟸ XM_063270771
- Peptide Label:	isoform X3
- UniProtKB:	A0A0G2K009 (UniProtKB/TrEMBL), A0A8I5ZTE8 (UniProtKB/TrEMBL)

Protein Domains

Ubiquitin-like protease family profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q9EQE1-F1-model_v2	AlphaFold	Q9EQE1	1-588	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698262

Promoter ID:

EPDNEW_R8784

Type:

multiple initiation site

Name:

Senp2_1

Description:

Sumo1/sentrin/SMT3 specific peptidase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	11	82,664,631 - 82,664,691	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:708378	AgrOrtholog
BioCyc Gene	G2FUF-20795	BioCyc
Ensembl Genes	ENSRNOG00000001773	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000002425	ENTREZGENE
	ENSRNOT00000087105	ENTREZGENE
Gene3D-CATH	Adenoviral Proteinase, Chain A	UniProtKB/Swiss-Prot
InterPro	Papain-like_cys_pep_sf	UniProtKB/Swiss-Prot
	Peptidase_C48_C	UniProtKB/Swiss-Prot
KEGG Report	rno:78973	UniProtKB/Swiss-Prot
NCBI Gene	78973	ENTREZGENE
PANTHER	SENTRIN-SPECIFIC PROTEASE 2	UniProtKB/Swiss-Prot
	SENTRIN/SUMO-SPECIFIC PROTEASE	UniProtKB/Swiss-Prot
Pfam	Peptidase_C48	UniProtKB/Swiss-Prot
PhenoGen	Senp2	PhenoGen
PROSITE	ULP_PROTEASE	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001773	RatGTEx
Superfamily-SCOP	SSF54001	UniProtKB/Swiss-Prot
UniProt	A0A0G2K009	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZTE8	ENTREZGENE
	A0A8L2PZM6	ENTREZGENE, UniProtKB/TrEMBL
	A6JS62	ENTREZGENE, UniProtKB/TrEMBL
	Q9EQE1	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2018-03-01	Senp2	SUMO specific peptidase 2	Senp2	Sumo1/sentrin/SMT3 specific peptidase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2009-12-15	Senp2	Sumo1/sentrin/SMT3 specific peptidase 2	Senp2	SUMO1/sentrin/SMT3 specific peptidase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-11-20	Senp2	SUMO1/sentrin/SMT3 specific peptidase 2	Senp2	SUMO/sentrin specific peptidase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Senp2	SUMO/sentrin specific peptidase 2	Senp2	SUMO/sentrin specific protease 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2004-12-14	Senp2	SUMO/sentrin specific protease 2	LOC78973	Axin-associating molecule	Symbol and Name updated	1299863	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)