Rps3a (ribosomal protein S3a) - Rat Genome Database

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Gene: Rps3a (ribosomal protein S3a) Rattus norvegicus
Analyze
Symbol: Rps3a (Ensembl: LOC100365839)
Name: ribosomal protein S3a (Ensembl:40S ribosomal protein S3a-like)
RGD ID: 62078
Description: Enables mRNA binding activity and translation initiation factor binding activity. Involved in positive regulation of fibroblast proliferation; positive regulation of translation; and response to ethanol. Part of cytosolic small ribosomal subunit. Orthologous to human RPS3A (ribosomal protein S3A); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 40S ribosomal protein S3a; small ribosomal subunit protein eS1; V-fos transformation effector protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82173,822,673 - 173,827,042 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2173,822,488 - 173,827,043 (-)EnsemblGRCr8
mRatBN7.22171,524,685 - 171,529,054 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2171,524,500 - 171,529,055 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2178,678,755 - 178,683,124 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02176,698,691 - 176,703,060 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02171,300,509 - 171,304,870 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02185,440,477 - 185,444,846 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2185,440,291 - 185,444,897 (-)Ensemblrn6Rnor6.0
Rnor_5.02204,831,252 - 204,835,621 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42178,092,351 - 178,096,720 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2165,497,425 - 165,501,795 (-)NCBICelera
RGSC_v3.12178,042,456 - 178,046,826 (-)NCBI
Cytogenetic Map2q34NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acrolein  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
alpha-Zearalanol  (EXP)
amiodarone  (EXP)
ammonium chloride  (EXP)
Aroclor 1254  (ISO)
arsenite(3-)  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
bleomycin A2  (EXP)
bromobenzene  (EXP)
Butylbenzyl phthalate  (EXP)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcium atom  (EXP)
calcium(0)  (EXP)
CGP 52608  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cisplatin  (ISO)
clofibrate  (EXP,ISO)
clofibric acid  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cylindrospermopsin  (ISO)
D-glucose  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenbuconazole  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
furfural  (ISO)
genistein  (EXP)
glucose  (ISO)
hydrogen peroxide  (ISO)
isoprenaline  (ISO)
ivermectin  (ISO)
L-ethionine  (EXP)
lipopolysaccharide  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methoxychlor  (EXP)
mitomycin C  (ISO)
N-nitrosodiethylamine  (EXP)
nickel subsulfide  (ISO)
nimesulide  (EXP)
nitrofen  (EXP)
nitroglycerin  (EXP)
omeprazole  (EXP)
ozone  (ISO)
p-menthan-3-ol  (ISO)
paracetamol  (ISO)
perfluorooctanoic acid  (EXP,ISO)
phenethyl caffeate  (EXP)
PhIP  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
Propiverine  (EXP)
resveratrol  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
sodium fluoride  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
trichloroethene  (EXP)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Identification of proteins of the 40 S ribosomal subunit involved in interaction with initiation factor eIF-2 in the quaternary initiation complex by means of monospecific antibodies. Bommer UA, etal., FEBS Lett. 1988 Jun 6;233(1):114-8.
3. The primary structures of rat ribosomal proteins S3a (the V-Fos transformation effector) and of S3b. Chan YL, etal., Biochem Biophys Res Commun 1996 Nov 1;228(1):141-7.
4. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6. Effect of ethanol on hepatic ribosomal proteins and mRNA. Haviryaji KS, etal., Mol Cell Biochem. 1992 Oct 7;115(2):143-7.
7. Fte-1, a v-fos transformation effector gene, encodes the mammalian homologue of a yeast gene involved in protein import into mitochondria. Kho CJ and Zarbl H, Proc Natl Acad Sci U S A 1992 Mar 15;89(6):2200-4.
8. Effect of decreased fte-1 gene expression on protein synthesis, cell growth, and transformation. Kho CJ, etal., Cell Growth Differ. 1996 Sep;7(9):1157-66.
9. Electron microscopic investigations on the location of rat liver ribosomal proteins S3a, S5, S6, S7 and S9 by means of antibody labeling. Lutsch G, etal., Biomed Biochim Acta. 1983;42(6):705-23.
10. Immunoelectron microscopic studies on the location of ribosomal proteins on the surface of the 40S ribosomal subunit from rat liver. Lutsch G, etal., Eur J Cell Biol. 1990 Feb;51(1):140-50.
11. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells. Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
12. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
13. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
14. GOA pipeline RGD automated data pipeline
15. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
16. Comprehensive gene review and curation RGD comprehensive gene curation
17. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
18. Ribosomal proteins cross-linked to natural mRNA by UV irradiation of rat liver polysomes. Takahashi Y and Ogata K, J Biochem. 1981 Nov;90(5):1549-52.
Additional References at PubMed
PMID:8706699   PMID:9566973   PMID:10713066   PMID:11823430   PMID:15489334   PMID:15572026   PMID:15883184   PMID:16213212   PMID:16635246   PMID:16791210   PMID:17289661   PMID:18809582  
PMID:20458337   PMID:21423176   PMID:21630459   PMID:22658674   PMID:22681889   PMID:23106098   PMID:23979707   PMID:24625528   PMID:25931508   PMID:29476059   PMID:30053369   PMID:35352799  


Genomics

Comparative Map Data
Rps3a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82173,822,673 - 173,827,042 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl2173,822,488 - 173,827,043 (-)EnsemblGRCr8
mRatBN7.22171,524,685 - 171,529,054 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2171,524,500 - 171,529,055 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx2178,678,755 - 178,683,124 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02176,698,691 - 176,703,060 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02171,300,509 - 171,304,870 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.02185,440,477 - 185,444,846 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2185,440,291 - 185,444,897 (-)Ensemblrn6Rnor6.0
Rnor_5.02204,831,252 - 204,835,621 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.42178,092,351 - 178,096,720 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera2165,497,425 - 165,501,795 (-)NCBICelera
RGSC_v3.12178,042,456 - 178,046,826 (-)NCBI
Cytogenetic Map2q34NCBI
RPS3A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384151,099,628 - 151,104,642 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4151,099,565 - 151,104,652 (+)Ensemblhg38GRCh38
GRCh374152,020,780 - 152,025,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364152,240,204 - 152,245,254 (+)NCBIBuild 36Build 36hg18NCBI36
Build 344152,378,388 - 152,383,393NCBI
Celera4149,342,420 - 149,347,475 (+)NCBICelera
Cytogenetic Map4q31.3NCBI
HuRef4147,746,045 - 147,751,132 (+)NCBIHuRef
CHM1_14151,997,753 - 152,002,834 (+)NCBICHM1_1
T2T-CHM13v2.04154,423,512 - 154,428,526 (+)NCBIT2T-CHM13v2.0
Rps3a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39386,045,247 - 86,049,975 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl386,045,247 - 86,050,009 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38386,137,940 - 86,142,668 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl386,137,940 - 86,142,702 (-)Ensemblmm10GRCm38
MGSCv37385,941,862 - 85,946,590 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36386,223,873 - 86,228,520 (-)NCBIMGSCv36mm8
Celera386,163,967 - 86,168,610 (-)NCBICelera
Cytogenetic Map3F1NCBI
cM Map337.83NCBI
Rps3a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554715,705,829 - 5,710,683 (+)Ensembl
ChiLan1.0NW_0049554715,705,829 - 5,710,683 (+)NCBIChiLan1.0ChiLan1.0
LOC100975318
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23148,982,386 - 148,987,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14149,339,875 - 149,345,092 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04143,438,184 - 143,443,266 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14155,092,898 - 155,097,954 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4155,092,898 - 155,097,953 (+)EnsemblpanPan2panpan1.1
RPS3A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11549,066,636 - 49,071,012 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1549,066,705 - 49,071,012 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1549,404,642 - 49,409,019 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01549,742,595 - 49,746,972 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl321,177,827 - 1,179,133 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl1549,742,680 - 49,749,194 (+)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl365,420,390 - 5,421,531 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11549,011,324 - 49,015,708 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01549,104,917 - 49,109,293 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01549,429,825 - 49,434,209 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530141,392,090 - 41,396,701 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365069,649,709 - 9,650,493 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049366891,134,547 - 1,139,161 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366891,134,565 - 1,139,161 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS3A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl877,889,607 - 78,023,346 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1877,889,616 - 77,893,740 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2882,594,439 - 82,598,565 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS3A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1797,676,686 - 97,681,519 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl797,676,666 - 97,682,294 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603777,287,350 - 77,292,223 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps3a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1367,417,253 - 67,421,590 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps3a
22 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:99
Interacting mature miRNAs:106
Transcripts:ENSRNOT00000016329
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358356Srcrt1Stress Responsive Cort QTL13.66blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)2163997722225110681Rat
1578648Bss11Bone structure and strength QTL 114.7femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)2169358774214358774Rat
1331734Bp204Blood pressure QTL 2043.61192arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170656145239614549Rat
631566Bp90Blood pressure QTL 900.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2149957381221199885Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845370229470703Rat
1354649Kidm17Kidney mass QTL 172.9kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)283465462229820014Rat
10755499Bp389Blood pressure QTL 3892.61arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)220695736231474293Rat
1298076Bp166Blood pressure QTL 1660.0009arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2138595962205135428Rat
1581576Pur7Proteinuria QTL 70.0001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)280396178220931218Rat
152025245Scl81Serum cholesterol level QTL 813.49blood cholesterol amount (VT:0000180)2124537199209621565Rat
1581578Cm49Cardiac mass QTL 494.90.01heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2145807215220931416Rat
631198Cm22Cardiac mass QTL 224.30.0008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)278269809208420281Rat
1554319Bmd2Bone mineral density QTL 213.40.0001lumbar vertebra area (VT:0010570)lumbar vertebra cross-sectional area (CMO:0001689)2122597372215234002Rat
12879836Kidm61Kidney mass QTL 610.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085199723085Rat
1581569Uae32Urinary albumin excretion QTL 320.0001urine protein amount (VT:0005160)urine albumin excretion rate (CMO:0000757)280396178220931218Rat
10043136Iddm54Insulin dependent diabetes mellitus QTL 543.40.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2145807215190807215Rat
12879837Am2Aortic mass QTL 20.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085199723085Rat
10043139Iddm55Insulin dependent diabetes mellitus QTL 553.10.0001blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)2150313808195313808Rat
12879838Cm86Cardiac mass QTL 860.002heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085199723085Rat
1302793Bw16Body weight QTL 1650.0001body mass (VT:0001259)body weight (CMO:0000012)2159440891205135267Rat
12879839Cm85Cardiac mass QTL 850.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085199723085Rat
1549833Bp257Blood pressure QTL 2570.003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2170652929215652929Rat
1358900Bw48Body weight QTL 484.88body mass (VT:0001259)body weight (CMO:0000012)2159440891220931218Rat
4889834Pur24Proteinuria QTL 245.80.014urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)2171994826205135428Rat
12879845Cm89Cardiac mass QTL 890.008heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)2154723085178247591Rat
1359030Bp277Blood pressure QTL 277arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)2143565208188565208Rat
12879846Cm90Cardiac mass QTL 900.011heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)2154723085178247591Rat
12879847Am4Aortic mass QTL 40.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)2154723085178247591Rat
7771605Memor19Memory QTL 190.00001exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)2172499769175588177Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)24265106205135428Rat
12879840Bw179Body weight QTL 1790.005body mass (VT:0001259)body weight (CMO:0000012)2154723085199723085Rat
7771603Bp371Blood pressure QTL 3710.00001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2172499769175588177Rat
1581502Esta3Estrogen-induced thymic atrophy QTL 3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)2139067258192287892Rat
1359032Hrtrt18Heart rate QTL 18heart pumping trait (VT:2000009)heart rate (CMO:0000002)2159440760195313808Rat
2301966Bp322Blood pressure QTL 3223.58arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2144882354205135428Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)267845182205135428Rat
1357991Ael2Aortic elastin QTL 24.20.000071aorta elastin amount (VT:0003905)aortic elastin2169227906214227906Rat
8662832Vetf7Vascular elastic tissue fragility QTL 73.5aorta elastin amount (VT:0003905)aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)283400752223709938Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)244537979205135428Rat
1359022Ppulsi1Prepulse inhibition QTL 13.63prepulse inhibition trait (VT:0003088)acoustic startle response measurement (CMO:0001519)2139067258184067258Rat
1641891Alcrsp17Alcohol response QTL 17response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660251712708Rat
724534Uae6Urinary albumin excretion QTL 610urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)280396034220931416Rat
61374Edpm2Estrogen-dependent pituitary mass QTL 24.420.86pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)278269809205135428Rat
8662843Vetf9Vascular elastic tissue fragility QTL 92.05thoracic aorta molecular composition trait (VT:0010568)aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)2159440760228950743Rat
2301415Cm67Cardiac mass QTL 670.003heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)2154723085178247591Rat
1331794Bp202Blood pressure QTL 2023.66819arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2143344967251712708Rat
71113Cari2Carrageenan-induced inflammation QTL 22.70.009hypodermis integrity trait (VT:0010550)inflammatory exudate volume (CMO:0001429)2143746578205135428Rat
1331805Cm29Cardiac mass QTL 293.50746heart mass (VT:0007028)heart wet weight (CMO:0000069)2143344967251712708Rat
11565180Kidm56Kidney mass QTL 560.003kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)2154723085178247591Rat
634308Sach6Saccharin preference QTL 64.9taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)2114384617215381366Rat
1598805Memor8Memory QTL 83exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)2150096616195096616Rat
11565181Bw176Body weight QTL 1760.002body mass (VT:0001259)body weight (CMO:0000012)2154723085178247591Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
724568Uae13Urinary albumin excretion QTL 134.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)2145306936212705578Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)227148328206613235Rat
1300165Rf9Renal function QTL 93.28kidney glomerulus integrity trait (VT:0010546)index of glomerular damage (CMO:0001135)2113746222205135428Rat
61401Niddm2Non-insulin dependent diabetes mellitus QTL 24.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)2147287892192287892Rat
631507Bp105Blood pressure QTL 1050.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2114384617215381366Rat
1641925Alcrsp2Alcohol response QTL 2response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)2151869660223841096Rat
1354609Niddm62Non-insulin dependent diabetes mellitus QTL 624.720.000006insulin secretion trait (VT:0003564)plasma insulin level (CMO:0000342)2117415288205135428Rat
1598833Bp295Blood pressure QTL 2953.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2150096616195096616Rat
1354622Kidm16Kidney mass QTL 163kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)283465462225110681Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)247856345205135428Rat
7488927Bp365Blood pressure QTL 3650.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2165453811210453811Rat
7488925Bp364Blood pressure QTL 3640.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)2163253030208253030Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)244537979184731399Rat
2306901Bp337Blood pressure QTL 3370.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)2166372086229820014Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)276328396209350714Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_017153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209727 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216850 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218808 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220759 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221185 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221431 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222056 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222736 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222773 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ231673 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232329 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232836 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232928 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M84716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X75161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000016329   ⟹   ENSRNOP00000016329
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2173,822,488 - 173,827,043 (-)Ensembl
mRatBN7.2 Ensembl2171,524,500 - 171,529,055 (-)Ensembl
Rnor_6.0 Ensembl2185,440,291 - 185,444,897 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110041   ⟹   ENSRNOP00000087509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl2173,822,488 - 173,827,043 (-)Ensembl
mRatBN7.2 Ensembl2171,524,683 - 171,529,044 (-)Ensembl
RefSeq Acc Id: NM_017153   ⟹   NP_058849
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr82173,822,673 - 173,827,042 (-)NCBI
mRatBN7.22171,524,685 - 171,529,054 (-)NCBI
Rnor_6.02185,440,477 - 185,444,846 (-)NCBI
Rnor_5.02204,831,252 - 204,835,621 (-)NCBI
RGSC_v3.42178,092,351 - 178,096,720 (-)RGD
Celera2165,497,425 - 165,501,795 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_058849 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA42335 (Get FASTA)   NCBI Sequence Viewer  
  AAH58483 (Get FASTA)   NCBI Sequence Viewer  
  CAA53004 (Get FASTA)   NCBI Sequence Viewer  
  EDM00796 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000016329
  ENSRNOP00000016329.3
GenBank Protein P49242 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_058849   ⟸   NM_017153
- UniProtKB: P49242 (UniProtKB/Swiss-Prot),   A6J5Z3 (UniProtKB/TrEMBL),   A0A8I6A843 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000016329   ⟸   ENSRNOT00000016329
Ensembl Acc Id: ENSRNOP00000087509   ⟸   ENSRNOT00000110041

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P49242-F1-model_v2 AlphaFold P49242 1-264 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691410
Promoter ID:EPDNEW_R1935
Type:multiple initiation site
Name:Rps3a_1
Description:ribosomal protein S3a
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.02185,444,846 - 185,444,906EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62078 AgrOrtholog
BioCyc Gene G2FUF-52576 BioCyc
Ensembl Genes ENSRNOG00000011893 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000016329 ENTREZGENE
  ENSRNOT00000016329.7 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6887884 IMAGE-MGC_LOAD
InterPro Ribosomal_S1/3_euk UniProtKB/Swiss-Prot
  Ribosomal_S3Ae UniProtKB/Swiss-Prot
  Ribosomal_S3Ae_CS UniProtKB/Swiss-Prot
KEGG Report rno:29288 UniProtKB/Swiss-Prot
MGC_CLONE MGC:72868 IMAGE-MGC_LOAD
NCBI Gene 29288 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S3A UniProtKB/Swiss-Prot
Pfam Ribosomal_S3Ae UniProtKB/Swiss-Prot
PhenoGen Rps3a PhenoGen
PROSITE RIBOSOMAL_S3AE UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000011893 RatGTEx
SMART Ribosomal_S3Ae UniProtKB/Swiss-Prot
UniProt A0A8I6A843 ENTREZGENE, UniProtKB/TrEMBL
  A6J5Z2_RAT UniProtKB/TrEMBL
  A6J5Z3 ENTREZGENE, UniProtKB/TrEMBL
  P49242 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P33443 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps3a  ribosomal protein S3a      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 263 amino acids 61742
gene_transcript has two alternate splicing forms 61742