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Gene: Rps3a (ribosomal protein S3a) Rattus norvegicus

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Symbol:

Rps3a (Ensembl: LOC100365839)

Name:

ribosomal protein S3a (Ensembl:40S ribosomal protein S3a-like)

RGD ID:

62078

Description:

Enables mRNA binding activity and translation initiation factor binding activity. Involved in positive regulation of fibroblast proliferation; positive regulation of translation; and response to ethanol. Part of cytosolic small ribosomal subunit. Orthologous to human RPS3A (ribosomal protein S3A); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

40S ribosomal protein S3a; small ribosomal subunit protein eS1; V-fos transformation effector protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPS3A (ribosomal protein S3A)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Rps3a1 (ribosomal protein S3A1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rps3a (ribosomal protein S3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100975318 (small ribosomal subunit protein eS1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPS3A (ribosomal protein S3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rps3a (ribosomal protein S3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPS3A (ribosomal protein S3A)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Rps3a1 (ribosomal protein S3A1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	RPS3A (ribosomal protein S3A)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	rps3a (ribosomal protein S3A)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rps-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPS1A	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPS1B	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RpS3A	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rps3a	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	173,822,673 - 173,827,042 (-)	NCBI		GRCr8
mRatBN7.2	2	171,524,685 - 171,529,054 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	171,524,500 - 171,529,055 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	178,678,755 - 178,683,124 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	176,698,691 - 176,703,060 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	171,300,509 - 171,304,870 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	185,440,477 - 185,444,846 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	185,440,291 - 185,444,897 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	204,831,252 - 204,835,621 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	178,092,351 - 178,096,720 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	178,042,456 - 178,046,826 (-)	NCBI
Celera	2	165,497,425 - 165,501,795 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (EXP,ISO)

5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole (EXP)

6-propyl-2-thiouracil (EXP)

acrolein (ISO)

aflatoxin B1 (ISO)

alpha-Zearalanol (EXP)

amiodarone (EXP)

ammonium chloride (EXP)

Aroclor 1254 (ISO)

arsenite(3-) (ISO)

benzbromarone (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (EXP,ISO)

bleomycin A2 (EXP)

bromobenzene (EXP)

cadmium atom (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

calcium atom (EXP)

calcium(0) (EXP)

CGP 52608 (ISO)

chloropicrin (ISO)

chlorpyrifos (ISO)

chromium(6+) (ISO)

cisplatin (ISO)

clofibrate (EXP,ISO)

clofibric acid (EXP)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cylindrospermopsin (ISO)

decabromodiphenyl ether (ISO)

dicrotophos (ISO)

diethylstilbestrol (ISO)

dioxygen (ISO)

disodium selenite (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenbuconazole (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

genistein (EXP)

hydrogen peroxide (ISO)

isoprenaline (ISO)

ivermectin (ISO)

L-ethionine (EXP)

lipopolysaccharide (ISO)

methoxychlor (EXP)

mitomycin C (ISO)

N-nitrosodiethylamine (EXP)

nickel subsulfide (ISO)

nimesulide (EXP)

nitrofen (EXP)

nitroglycerin (EXP)

omeprazole (EXP)

ozone (ISO)

p-menthan-3-ol (ISO)

paracetamol (ISO)

perfluorooctanoic acid (EXP,ISO)

phenethyl caffeate (EXP)

PhIP (EXP)

pirinixic acid (EXP)

potassium chromate (ISO)

Propiverine (EXP)

resveratrol (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sodium dichromate (ISO)

sodium fluoride (EXP)

thioacetamide (EXP)

thiram (ISO)

trichloroethene (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

negative regulation of apoptotic process (ISO,ISS)

positive regulation of fibroblast proliferation (IMP)

positive regulation of translation (IDA)

response to ethanol (IEP)

ribosomal small subunit biogenesis (ISO,ISS)

translation (IEA,ISO,ISS)

Cellular Component

cytoplasm (ISO)

cytosol (IBA,ISO,ISS)

cytosolic ribosome (ISO)

cytosolic small ribosomal subunit (IDA,IEA,ISO)

endoplasmic reticulum (ISO)

nucleolus (IEA,ISO)

nucleus (ISO,ISS)

ribonucleoprotein complex (ISO,ISS)

small ribosomal subunit (IDA)

small-subunit processome (ISO,ISS)

synapse (ISO)

Molecular Function

mRNA 5'-UTR binding (ISO)

mRNA binding (IDA)

protein binding (IPI,ISO)

structural constituent of ribosome (IEA,ISO)

translation initiation factor binding (IPI)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Structures of the human and Drosophila 80S ribosome.	Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2.	Identification of proteins of the 40 S ribosomal subunit involved in interaction with initiation factor eIF-2 in the quaternary initiation complex by means of monospecific antibodies.	Bommer UA, etal., FEBS Lett. 1988 Jun 6;233(1):114-8.
3.	The primary structures of rat ribosomal proteins S3a (the V-Fos transformation effector) and of S3b.	Chan YL, etal., Biochem Biophys Res Commun 1996 Nov 1;228(1):141-7.
4.	Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29.	Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Effect of ethanol on hepatic ribosomal proteins and mRNA.	Haviryaji KS, etal., Mol Cell Biochem. 1992 Oct 7;115(2):143-7.
7.	Fte-1, a v-fos transformation effector gene, encodes the mammalian homologue of a yeast gene involved in protein import into mitochondria.	Kho CJ and Zarbl H, Proc Natl Acad Sci U S A 1992 Mar 15;89(6):2200-4.
8.	Effect of decreased fte-1 gene expression on protein synthesis, cell growth, and transformation.	Kho CJ, etal., Cell Growth Differ. 1996 Sep;7(9):1157-66.
9.	Electron microscopic investigations on the location of rat liver ribosomal proteins S3a, S5, S6, S7 and S9 by means of antibody labeling.	Lutsch G, etal., Biomed Biochim Acta. 1983;42(6):705-23.
10.	Immunoelectron microscopic studies on the location of ribosomal proteins on the surface of the 40S ribosomal subunit from rat liver.	Lutsch G, etal., Eur J Cell Biol. 1990 Feb;51(1):140-50.
11.	Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells.	Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
12.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
13.	Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits.	O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
14.	GOA pipeline	RGD automated data pipeline
15.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
16.	Comprehensive gene review and curation	RGD comprehensive gene curation
17.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
18.	Ribosomal proteins cross-linked to natural mRNA by UV irradiation of rat liver polysomes.	Takahashi Y and Ogata K, J Biochem. 1981 Nov;90(5):1549-52.

Additional References at PubMed

PMID:8706699	PMID:9566973	PMID:10713066	PMID:11823430	PMID:15489334	PMID:15572026	PMID:15883184	PMID:16213212	PMID:16635246	PMID:16791210	PMID:17289661	PMID:18809582
PMID:20458337	PMID:21423176	PMID:21630459	PMID:22658674	PMID:22681889	PMID:23106098	PMID:23979707	PMID:24625528	PMID:25931508	PMID:29476059	PMID:30053369	PMID:35352799

Genomics

Comparative Map Data

Rps3a
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	173,822,673 - 173,827,042 (-)	NCBI		GRCr8
mRatBN7.2	2	171,524,685 - 171,529,054 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	171,524,500 - 171,529,055 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	178,678,755 - 178,683,124 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	176,698,691 - 176,703,060 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	171,300,509 - 171,304,870 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	185,440,477 - 185,444,846 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	185,440,291 - 185,444,897 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	204,831,252 - 204,835,621 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	178,092,351 - 178,096,720 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	2	178,042,456 - 178,046,826 (-)	NCBI
Celera	2	165,497,425 - 165,501,795 (-)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

RPS3A
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	151,099,628 - 151,104,642 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	151,099,624 - 151,104,642 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	152,020,780 - 152,025,794 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	152,240,204 - 152,245,254 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	152,378,388 - 152,383,393	NCBI
Celera	4	149,342,420 - 149,347,475 (+)	NCBI		Celera
Cytogenetic Map	4	q31.3	NCBI
HuRef	4	147,746,045 - 147,751,132 (+)	NCBI		HuRef
CHM1_1	4	151,997,753 - 152,002,834 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	154,423,512 - 154,428,526 (+)	NCBI		T2T-CHM13v2.0

Rps3a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	86,045,247 - 86,049,975 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	86,045,247 - 86,050,009 (-)	Ensembl		GRCm39 Ensembl
GRCm38	3	86,137,940 - 86,142,668 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	86,137,940 - 86,142,702 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	85,941,862 - 85,946,590 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	86,223,873 - 86,228,520 (-)	NCBI		MGSCv36	mm8
Celera	3	86,163,967 - 86,168,610 (-)	NCBI		Celera
Cytogenetic Map	3	F1	NCBI
cM Map	3	37.83	NCBI

Rps3a
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955471	5,705,829 - 5,710,683 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955471	5,705,829 - 5,710,683 (+)	NCBI	ChiLan1.0	ChiLan1.0

LOC100975318
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	148,982,386 - 148,987,600 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	149,339,875 - 149,345,092 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	143,438,184 - 143,443,266 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	155,092,898 - 155,097,954 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	155,092,898 - 155,097,953 (+)	Ensembl	panpan1.1		panPan2

RPS3A
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	15	49,066,636 - 49,071,012 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	15	49,066,705 - 49,071,012 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	15	49,404,642 - 49,409,019 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	15	49,742,595 - 49,746,972 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	15	49,742,680 - 49,749,194 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	15	49,011,324 - 49,015,708 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	15	49,104,917 - 49,109,293 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	15	49,429,825 - 49,434,209 (+)	NCBI		UU_Cfam_GSD_1.0

Rps3a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405301	41,392,090 - 41,396,701 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936689	1,134,547 - 1,139,161 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936689	1,134,565 - 1,139,161 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPS3A
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	77,889,607 - 78,023,346 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	77,889,616 - 77,893,740 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	82,594,439 - 82,598,565 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Variants

Variants in Rps3a
39 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	121
Count of miRNA genes:	99
Interacting mature miRNAs:	106
Transcripts:	ENSRNOT00000016329
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358356	Srcrt1	Stress Responsive Cort QTL1	3.66		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	2	161699179	222436696	Rat
1578648	Bss11	Bone structure and strength QTL 11	4.7		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	2	114837527	211674221	Rat
1331734	Bp204	Blood pressure QTL 204	3.61192		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168358098	223265385	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
6907363	Bp357	Blood pressure QTL 357	4.1	0.002	arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	129540907	174540907	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118463	226797303	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	81754530	227146641	Rat
1298076	Bp166	Blood pressure QTL 166		0.0009	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	136445150	202447032	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	18960362	228801039	Rat
152025245	Scl81	Serum cholesterol level QTL 81	3.49		blood cholesterol amount (VT:0000180)		2	122609194	206936711	Rat
70162	Bp63	Blood pressure QTL 63	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
1554319	Bmd2	Bone mineral density QTL 2	13.4	0.0001	lumbar vertebra area (VT:0010570)	lumbar vertebra cross-sectional area (CMO:0001689)	2	114837675	212549332	Rat
12879836	Kidm61	Kidney mass QTL 61		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	185122374	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	78665619	219826953	Rat
10043136	Iddm54	Insulin dependent diabetes mellitus QTL 54	3.4	0.0001	blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	143657411	190602963	Rat
12879837	Am2	Aortic mass QTL 2		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	185122374	Rat
1302793	Bw16	Body weight QTL 16	5	0.0001	body mass (VT:0001259)	body weight (CMO:0000012)	2	157142209	202446871	Rat
12879838	Cm86	Cardiac mass QTL 86		0.002	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	185122374	Rat
61467	Bp14	Blood pressure QTL 14	2.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	43154682	202446871	Rat
12879839	Cm85	Cardiac mass QTL 85		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	185122374	Rat
61469	Bp16	Blood pressure QTL 16	5.64		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	2	169745596	214745596	Rat
70175	BpQTLCluster3	Blood pressure QTL cluster 3	4.128		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	2	135552573	202446871	Rat
1549833	Bp257	Blood pressure QTL 257		0.003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	168354880	185122374	Rat
1358900	Bw48	Body weight QTL 48	4.88		body mass (VT:0001259)	body weight (CMO:0000012)	2	157142078	211086598	Rat
12879845	Cm89	Cardiac mass QTL 89		0.008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	152413072	175950118	Rat
1359030	Bp277	Blood pressure QTL 277			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	114837527	185876470	Rat
12879846	Cm90	Cardiac mass QTL 90		0.011	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	2	152413072	175950118	Rat
7771605	Memor19	Memory QTL 19		0.00001	exploratory behavior trait (VT:0010471)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	2	170201741	173290301	Rat
12879847	Am4	Aortic mass QTL 4		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	2	152413072	175950118	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	56043031	202447032	Rat
12879840	Bw179	Body weight QTL 179		0.005	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	185122374	Rat
7771603	Bp371	Blood pressure QTL 371		0.00001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	170201741	173290301	Rat
1581502	Esta3	Estrogen-induced thymic atrophy QTL 3			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	2	136916935	189599348	Rat
1359032	Hrtrt18	Heart rate QTL 18			heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	2	157142078	192625452	Rat
2301966	Bp322	Blood pressure QTL 322	3.58		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150540301	202447032	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	66118275	202447032	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	81689826	221035911	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	42804607	202447032	Rat
1641891	Alcrsp17	Alcohol response QTL 17			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	249053267	Rat
1359022	Ppulsi1	Prepulse inhibition QTL 1	3.63		prepulse inhibition trait (VT:0003088)	acoustic startle response measurement (CMO:0001519)	2	136916935	213594495	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	78665619	249053267	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	76539322	202447032	Rat
8662843	Vetf9	Vascular elastic tissue fragility QTL 9	2.05		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	157142078	226277316	Rat
631501	Bp101	Blood pressure QTL 101	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	150341684	202446871	Rat
2301415	Cm67	Cardiac mass QTL 67		0.003	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	2	152413072	175950118	Rat
2307174	Activ3	Activity QTL 3	4.83	0.000058	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	2	168594495	213594495	Rat
1331794	Bp202	Blood pressure QTL 202	3.66819		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	141194931	223265385	Rat
71113	Cari2	Carrageenan-induced inflammation QTL 2	2.7	0.009	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	2	141596551	202447032	Rat
1331805	Cm29	Cardiac mass QTL 29	3.50746		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	2	141194931	223265385	Rat
11565180	Kidm56	Kidney mass QTL 56		0.003	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	152413072	175950118	Rat
1598805	Memor8	Memory QTL 8	3		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	2	150341585	189039377	Rat
634308	Sach6	Saccharin preference QTL 6	4.9		taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	2	112456140	212696837	Rat
11565181	Bw176	Body weight QTL 176		0.002	body mass (VT:0001259)	body weight (CMO:0000012)	2	152413072	175950118	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
724568	Uae13	Urinary albumin excretion QTL 13	4.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	2	143157029	210020885	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	25413423	203928301	Rat
1300165	Rf9	Renal function QTL 9	3.28		kidney glomerulus integrity trait (VT:0010546)	index of glomerular damage (CMO:0001135)	2	133914684	202447032	Rat
61401	Niddm2	Non-insulin dependent diabetes mellitus QTL 2	4.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	2	144599348	189599348	Rat
631507	Bp105	Blood pressure QTL 105		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	112456140	212696837	Rat
1641925	Alcrsp2	Alcohol response QTL 2			response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	149559561	221167075	Rat
1354609	Niddm62	Non-insulin dependent diabetes mellitus QTL 62	4.72	0.000006	insulin secretion trait (VT:0003564)	plasma insulin level (CMO:0000342)	2	150540301	202447032	Rat
1598833	Bp295	Blood pressure QTL 295	3.5		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	147798556	192798556	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	81754530	222436696	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	46123260	202447032	Rat
7488927	Bp365	Blood pressure QTL 365		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	162765032	207765032	Rat
1598838	Bp290	Blood pressure QTL 290	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	166539266	211539266	Rat
7488925	Bp364	Blood pressure QTL 364		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	160564068	205564068	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	42804607	182042367	Rat
2306901	Bp337	Blood pressure QTL 337		0.01	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	164073756	227146641	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	74786664	206665859	Rat
6903312	Bw112	Body weight QTL 112	3.2	0.0013	body mass (VT:0001259)	body weight (CMO:0000012)	2	143657569	184114274	Rat
1354601	Slep1	Serum leptin concentration QTL 1	5.39		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	2	43171017	184114403	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_017153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC058483	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ209727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211708	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ216850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217809	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ218808	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219543	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ219867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220260	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220504	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220529	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220577	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220731	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ220759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221431	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221628	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ221931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222056	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222736	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222773	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223535	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227696	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227805	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ227878	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228376	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ229960	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ231673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232329	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232836	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ232928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233768	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234537	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M84716	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X75161	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016329 ⟹ ENSRNOP00000016329

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	171,524,500 - 171,529,055 (-)	Ensembl
Rnor_6.0 Ensembl	2	185,440,291 - 185,444,897 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000110041 ⟹ ENSRNOP00000087509

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	171,524,683 - 171,529,044 (-)	Ensembl

RefSeq Acc Id:

NM_017153 ⟹ NP_058849

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	173,822,673 - 173,827,042 (-)	NCBI
mRatBN7.2	2	171,524,685 - 171,529,054 (-)	NCBI
Rnor_6.0	2	185,440,477 - 185,444,846 (-)	NCBI
Rnor_5.0	2	204,831,252 - 204,835,621 (-)	NCBI
RGSC_v3.4	2	178,092,351 - 178,096,720 (-)	RGD
Celera	2	165,497,425 - 165,501,795 (-)	RGD

Sequence:

show sequence

CCTTTTGGCTCTCAGAGCGGCACCATGGCGGTCGGGAAGAACAAGCGCCTGACGAAAGGTGGCA
AGAAGGGAGCCAAGAAGAAAGTGGTTGATCCATTTTCTAAGAAAGACTGGTATGATGTGAAAGC
TCCAGCAATGTTCAATATTAGGAACATCGGGAAAACACTAGTTACAAGGACTCAAGGAACCAAA
ATTGCATCAGATGGCCTCAAGGGTCGTGTGTTCGAAGTGAGTCTTGCAGATCTACAGAACGATG
AAGTTGCATTTAGAAAGTTCAAGCTAATTACTGAGGATGTTCAGGGCAAAAACTGTCTGACTAA
CTTCCATGGCATGGATCTTACCCGGGACAAAATGTGCTCCATGGTCAAAAAGTGGCAGACCATG
ATTGAAGCTCATGTTGATGTGAAGACGACCGATGGGTATTTGCTCCGACTTTTCTGTGTTGGTT
TCACTAAGAAACGTAACAACCAGATTAGAAAGACATCCTATGCGCAGCACCAGCAGGTCCGCCA
GATCCGCAAGAAGATGATGGAGATCATGACCCGAGAAGTGCAGACAAATGACTTGAAGGAAGTA
GTTAATAAACTGATTCCAGACAGCATTGGGAAAGACATAGAGAAGGCTTGCCAGTCCATCTATC
CTCTCCATGACGTTTTTGTTAGGAAAGTCAAAATGCTGAAGAAACCCAAGTTTGAATTGGGAAA
ACTCATGGAGCTCCATGGTGAAGGCGGTAGTTCTGGCAAAACAACTGGTGATGAGACAGGTGCT
AAGGTTGAACGAGCTGATGGCTATGAACCACCAGTCCAAGAATCCGTTTAAAATCCAGATTTTT
AATAGCGACAAATAAAAAGTCCTATTTGTGAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_058849	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA42335	(Get FASTA)	NCBI Sequence Viewer
	AAH58483	(Get FASTA)	NCBI Sequence Viewer
	CAA53004	(Get FASTA)	NCBI Sequence Viewer
	EDM00796	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016329.3
	ENSRNOP00000087509.1
	ENSRNOP00055034875
	ENSRNOP00060042907
	ENSRNOP00065040340
GenBank Protein	P49242	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_058849 ⟸ NM_017153

- UniProtKB:

P49242 (UniProtKB/Swiss-Prot), A6J5Z3 (UniProtKB/TrEMBL), A0A8I6A843 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNIGKTLVTRTQGTKIASDGLKG
RVFEVSLADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMVKKWQTMIEAHVDVK
TTDGYLLRLFCVGFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDS
IGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGGSSGKTTGDETGAKVERADGY
EPPVQESV

hide sequence

Ensembl Acc Id:

ENSRNOP00000016329 ⟸ ENSRNOT00000016329

Ensembl Acc Id:

ENSRNOP00000087509 ⟸ ENSRNOT00000110041

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P49242-F1-model_v2	AlphaFold	P49242	1-264	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691410

Promoter ID:

EPDNEW_R1935

Type:

multiple initiation site

Name:

Rps3a_1

Description:

ribosomal protein S3a

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	185,444,846 - 185,444,906	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:62078	AgrOrtholog
BioCyc Gene	G2FUF-52576	BioCyc
Ensembl Genes	ENSRNOG00000011893	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055024774	UniProtKB/Swiss-Prot
	ENSRNOG00060029692	UniProtKB/Swiss-Prot
	ENSRNOG00065028520	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000016329.7	UniProtKB/Swiss-Prot
	ENSRNOT00000110041.1	UniProtKB/TrEMBL
	ENSRNOT00055042712	UniProtKB/Swiss-Prot
	ENSRNOT00060051593	UniProtKB/Swiss-Prot
	ENSRNOT00065049193	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:6887884	IMAGE-MGC_LOAD
InterPro	Ribosomal_S1/3_euk	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S3Ae	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ribosomal_S3Ae_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29288	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE	MGC:72868	IMAGE-MGC_LOAD
NCBI Gene	29288	ENTREZGENE
PANTHER	40S RIBOSOMAL PROTEIN S3A	UniProtKB/Swiss-Prot
	40S RIBOSOMAL PROTEIN S3A	UniProtKB/Swiss-Prot
	40S RIBOSOMAL PROTEIN S3A	UniProtKB/TrEMBL
	40S RIBOSOMAL PROTEIN S3A	UniProtKB/TrEMBL
Pfam	Ribosomal_S3Ae	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Rps3a	PhenoGen
PROSITE	RIBOSOMAL_S3AE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000011893	RatGTEx
	ENSRNOG00055024774	RatGTEx
	ENSRNOG00060029692	RatGTEx
	ENSRNOG00065028520	RatGTEx
SMART	Ribosomal_S3Ae	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I6A843	ENTREZGENE, UniProtKB/TrEMBL
	A6J5Z2_RAT	UniProtKB/TrEMBL
	A6J5Z3	ENTREZGENE, UniProtKB/TrEMBL
	P49242	ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary	P33443	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-06-10	Rps3a	ribosomal protein S3a			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_protein	263 amino acids	61742
gene_transcript	has two alternate splicing forms	61742

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations