Rps12 (ribosomal protein S12) - Rat Genome Database

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Gene: Rps12 (ribosomal protein S12) Rattus norvegicus
Analyze
Symbol: Rps12
Name: ribosomal protein S12
RGD ID: 62024
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in maintenance of translational fidelity and ribosomal small subunit biogenesis. Part of cytosolic large ribosomal subunit and cytosolic small ribosomal subunit. Orthologous to human RPS12 (ribosomal protein S12); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 40S ribosomal protein S12; small ribosomal subunit protein eS12
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Rps12-ps6  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8123,499,943 - 23,502,234 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl123,500,073 - 23,502,235 (+)EnsemblGRCr8
mRatBN7.2121,680,854 - 21,683,010 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,680,852 - 21,683,014 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx121,459,907 - 21,462,098 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,459,973 - 27,462,164 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,657,239 - 21,659,395 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,758,214 - 22,760,370 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,758,212 - 22,760,370 (+)Ensemblrn6Rnor6.0
Rnor_5.0124,229,988 - 24,232,144 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4122,265,326 - 22,267,482 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera120,423,957 - 20,426,113 (+)NCBICelera
RGSC_v3.1122,268,307 - 22,270,422 (+)NCBI
Cytogenetic Map1p12NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-alpha-phellandrene  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,6-dimethoxyphenol  (ISO)
2,6-dinitrotoluene  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (EXP,ISO)
7,12-dimethyltetraphene  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-phellandrene  (ISO)
ammonium chloride  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenic trichloride  (ISO)
arsenite(3-)  (ISO)
artesunate  (ISO)
benzatropine  (ISO)
beta-naphthoflavone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
bisphenol F  (EXP,ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
Cuprizon  (ISO)
D-glucose  (ISO)
deoxynivalenol  (ISO)
dibutyl phthalate  (ISO)
dichlorine  (EXP)
dicrotophos  (ISO)
diuron  (ISO)
enzyme inhibitor  (ISO)
flutamide  (EXP)
folic acid  (ISO)
fumonisin B1  (ISO)
furfural  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
glucose  (ISO)
hyaluronic acid  (EXP)
hydralazine  (ISO)
hydrogen peroxide  (EXP)
ivermectin  (ISO)
linsidomine  (EXP)
lithium atom  (ISO)
lithium hydride  (ISO)
maneb  (ISO)
methidathion  (ISO)
methylisothiazolinone  (ISO)
methylparaben  (ISO)
myricetin  (ISO)
nefazodone  (EXP)
nimesulide  (EXP)
nitric oxide  (ISO)
nitrofen  (EXP)
okadaic acid  (ISO)
ozone  (EXP)
paracetamol  (ISO)
paraquat  (ISO)
parathion  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenanthrene  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
pterostilbene  (ISO)
pyrogallol  (ISO)
rotenone  (EXP)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium chloride  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
tungsten  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 40 S ribosomal subunit proteins Sa, Sc, S3a, S3b, S5', S9, S10, S11, S12, S14, S15, S15', S16, S17, S18, S19, S20, S21, S26, S27', and S29. Collatz E, etal., J Biol Chem. 1977 Dec 25;252(24):9071-80.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
5. Identification of differentially expressed genes related to metabolic syndrome induced with high-fat diet in E3 rats. Lan X, etal., Exp Biol Med (Maywood). 2015 Feb;240(2):235-41. doi: 10.1177/1535370214554531. Epub 2014 Oct 6.
6. Topography and stoichiometry of acidic phosphoproteins in rat liver 60 S ribosomal subunit. Lavergne JP, etal., FEBS Lett. 1988 May 9;232(1):29-34.
7. The primary structure of rat ribosomal protein S12. The relationship of rat S12 to other ribosomal proteins and a correlation of the amino acid sequences of rat and yeast ribosomal proteins. Lin A, etal., J Biol Chem 1987 Oct 15;262(29):14343-51.
8. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
9. Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits. O'Donohue MF, etal., J Cell Biol. 2010 Sep 6;190(5):853-66. doi: 10.1083/jcb.201005117.
10. GOA pipeline RGD automated data pipeline
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Comprehensive gene review and curation RGD comprehensive gene curation
13. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
14. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
15. 3-morpholinosydnonimine participates in the attenuation of neointima formation via inhibition of annexin A2-mediated vascular smooth muscle cell migration. Won KJ, etal., Proteomics. 2011 Jan;11(2):193-201. doi: 10.1002/pmic.200900834. Epub 2010 Dec 14.
Additional References at PubMed
PMID:2207170   PMID:8706699   PMID:15883184   PMID:19946888   PMID:22658674   PMID:22681889   PMID:35352799  


Genomics

Comparative Map Data
Rps12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8123,499,943 - 23,502,234 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl123,500,073 - 23,502,235 (+)EnsemblGRCr8
mRatBN7.2121,680,854 - 21,683,010 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,680,852 - 21,683,014 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx121,459,907 - 21,462,098 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,459,973 - 27,462,164 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,657,239 - 21,659,395 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,758,214 - 22,760,370 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,758,212 - 22,760,370 (+)Ensemblrn6Rnor6.0
Rnor_5.0124,229,988 - 24,232,144 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4122,265,326 - 22,267,482 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera120,423,957 - 20,426,113 (+)NCBICelera
RGSC_v3.1122,268,307 - 22,270,422 (+)NCBI
Cytogenetic Map1p12NCBI
RPS12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386132,814,569 - 132,817,564 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6132,814,557 - 132,817,577 (+)Ensemblhg38GRCh38
GRCh376133,135,708 - 133,138,703 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366133,177,401 - 133,180,396 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346133,177,402 - 133,180,395NCBI
Celera6133,882,535 - 133,885,530 (+)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6130,710,744 - 130,713,739 (+)NCBIHuRef
CHM1_16133,399,407 - 133,402,400 (+)NCBICHM1_1
T2T-CHM13v2.06134,009,591 - 134,012,586 (+)NCBIT2T-CHM13v2.0
Rps12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391023,661,042 - 23,664,297 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1023,661,081 - 23,663,173 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381023,785,183 - 23,787,383 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1023,785,183 - 23,787,275 (-)Ensemblmm10GRCm38
MGSCv371023,504,989 - 23,507,015 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361023,474,601 - 23,476,616 (-)NCBIMGSCv36mm8
Celera1024,716,231 - 24,718,257 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1011.1NCBI
Rps12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543613,328,496 - 13,331,883 (+)Ensembl
ChiLan1.0NW_00495543613,328,496 - 13,331,321 (+)NCBIChiLan1.0ChiLan1.0
RPS12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25152,798,202 - 152,801,465 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16150,705,306 - 150,708,519 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06130,592,127 - 130,595,211 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16134,698,833 - 134,701,952 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6134,698,833 - 134,701,952 (+)EnsemblpanPan2panpan1.1
RPS12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,836,409 - 25,839,148 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,836,500 - 25,839,146 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha126,846,557 - 26,849,258 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0125,987,363 - 25,990,084 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,987,416 - 25,990,082 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,867,211 - 25,869,912 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,757,886 - 25,760,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0126,059,799 - 26,062,521 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946121,048,748 - 121,051,324 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936560828,279 - 830,511 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936560828,032 - 830,540 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl130,920,808 - 30,923,658 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1130,920,804 - 30,923,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2134,439,083 - 34,441,684 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11340,703,285 - 40,706,235 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1340,701,883 - 40,706,368 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604012,890,500 - 12,893,563 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478017,003,128 - 17,005,756 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478017,003,023 - 17,039,997 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps12
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12209,856,443 - 209,858,643 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps12
6 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:15
Count of miRNA genes:14
Interacting mature miRNAs:14
Transcripts:ENSRNOT00000022184
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1126564886Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1126564886Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_031709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272910 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC058460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ210032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221249 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221368 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222486 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222742 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223374 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ224074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ230145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M18547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022184   ⟹   ENSRNOP00000022184
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl123,500,073 - 23,502,231 (+)Ensembl
mRatBN7.2 Ensembl121,680,852 - 21,683,010 (+)Ensembl
Rnor_6.0 Ensembl122,758,212 - 22,760,370 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115390   ⟹   ENSRNOP00000092043
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl123,500,094 - 23,502,235 (+)Ensembl
mRatBN7.2 Ensembl121,680,873 - 21,683,014 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000118437   ⟹   ENSRNOP00000093841
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl123,500,073 - 23,502,231 (+)Ensembl
mRatBN7.2 Ensembl121,680,891 - 21,683,011 (+)Ensembl
RefSeq Acc Id: NM_031709   ⟹   NP_113897
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8123,500,075 - 23,502,231 (+)NCBI
mRatBN7.2121,680,854 - 21,683,010 (+)NCBI
Rnor_6.0122,758,214 - 22,760,370 (+)NCBI
Rnor_5.0124,229,988 - 24,232,144 (+)NCBI
RGSC_v3.4122,265,326 - 22,267,482 (+)RGD
Celera120,423,957 - 20,426,113 (+)RGD
Sequence:
RefSeq Acc Id: XM_063272910   ⟹   XP_063128980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8123,499,943 - 23,502,234 (+)NCBI
RefSeq Acc Id: XM_063272913   ⟹   XP_063128983
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8123,500,115 - 23,502,234 (+)NCBI
RefSeq Acc Id: XM_063272917   ⟹   XP_063128987
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8123,500,181 - 23,502,234 (+)NCBI
RefSeq Acc Id: NP_113897   ⟸   NM_031709
- UniProtKB: P63324 (UniProtKB/Swiss-Prot),   Q6PDW1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022184   ⟸   ENSRNOT00000022184
Ensembl Acc Id: ENSRNOP00000093841   ⟸   ENSRNOT00000118437
Ensembl Acc Id: ENSRNOP00000092043   ⟸   ENSRNOT00000115390
RefSeq Acc Id: XP_063128980   ⟸   XM_063272910
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063128983   ⟸   XM_063272913
- Peptide Label: isoform X2
- UniProtKB: P63324 (UniProtKB/Swiss-Prot),   Q6PDW1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128987   ⟸   XM_063272917
- Peptide Label: isoform X2
- UniProtKB: P63324 (UniProtKB/Swiss-Prot),   Q6PDW1 (UniProtKB/TrEMBL)
Protein Domains
Ribosomal protein eL8/eL30/eS12/Gadd45

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P63324-F1-model_v2 AlphaFold P63324 1-132 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689533
Promoter ID:EPDNEW_R58
Type:multiple initiation site
Name:Rps12_1
Description:ribosomal protein S12
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0122,758,250 - 22,758,310EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:62024 AgrOrtholog
BioCyc Gene G2FUF-62072 BioCyc
Ensembl Genes ENSRNOG00000016411 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000022184 ENTREZGENE
Gene3D-CATH 3.30.1330.30 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:6919500 IMAGE-MGC_LOAD
InterPro L30e-like UniProtKB/Swiss-Prot
  Ribosomal_eS12_CS UniProtKB/Swiss-Prot
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/Swiss-Prot
  Ribosomal_S12e UniProtKB/Swiss-Prot
MGC_CLONE MGC:72763 IMAGE-MGC_LOAD
NCBI Gene 65139 ENTREZGENE
PANTHER PTHR11843 UniProtKB/Swiss-Prot
Pfam Ribosomal_L7Ae UniProtKB/Swiss-Prot
PhenoGen Rps12 PhenoGen
PRINTS RIBSOMALS12E UniProtKB/Swiss-Prot
PROSITE RIBOSOMAL_S12E UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000016411 RatGTEx
Superfamily-SCOP SSF55315 UniProtKB/Swiss-Prot
TIGR TC204203
UniProt A0A8I6AL68_RAT UniProtKB/TrEMBL
  F7EWX3_RAT UniProtKB/TrEMBL
  P63324 ENTREZGENE
  Q6PDW1 ENTREZGENE, UniProtKB/TrEMBL
  RS12_RAT UniProtKB/Swiss-Prot
UniProt Secondary P09388 UniProtKB/Swiss-Prot
  P12728 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2002-06-10 Rps12  ribosomal protein S12      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_protein 129 amino acids and a molecular weight of 14,120 61738