Rps12 (ribosomal protein S12) - Rat Genome Database

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Gene: Rps12 (ribosomal protein S12) Heterocephalus glaber
Analyze
Symbol: Rps12
Name: ribosomal protein S12
RGD ID: 18910181
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN positive regulation of canonical Wnt signaling pathway (ortholog); response to organonitrogen compound (ortholog); ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; ASSOCIATED WITH Hypertriglyceridemia (ortholog); FOUND IN cytosol (ortholog); cytosolic large ribosomal subunit (ortholog); cytosolic ribosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S12
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478017,003,128 - 17,005,756 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478017,003,023 - 17,039,997 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Rps12
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478017,003,128 - 17,005,756 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478017,003,023 - 17,039,997 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RPS12
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386132,814,569 - 132,817,564 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6132,814,569 - 132,817,564 (+)EnsemblGRCh38hg38GRCh38
GRCh376133,135,708 - 133,138,703 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366133,177,401 - 133,180,396 (+)NCBINCBI36Build 36hg18NCBI36
Build 346133,177,402 - 133,180,395NCBI
Celera6133,882,535 - 133,885,530 (+)NCBICelera
Cytogenetic Map6q23.2NCBI
HuRef6130,710,744 - 130,713,739 (+)NCBIHuRef
CHM1_16133,399,407 - 133,402,400 (+)NCBICHM1_1
T2T-CHM13v2.06134,009,591 - 134,012,586 (+)NCBIT2T-CHM13v2.0
Rps12
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391023,661,042 - 23,664,297 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1023,661,081 - 23,663,173 (-)EnsemblGRCm39 Ensembl
GRCm381023,785,183 - 23,787,383 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1023,785,183 - 23,787,275 (-)EnsemblGRCm38mm10GRCm38
MGSCv371023,504,989 - 23,507,015 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361023,474,601 - 23,476,616 (-)NCBIMGSCv36mm8
Celera1024,716,231 - 24,718,257 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1011.1NCBI
Rps12
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8123,499,943 - 23,502,234 (+)NCBIGRCr8
mRatBN7.2121,680,854 - 21,683,010 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl121,680,852 - 21,683,014 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx121,459,907 - 21,462,098 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0127,459,973 - 27,462,164 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0121,657,239 - 21,659,395 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0122,758,214 - 22,760,370 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl122,758,212 - 22,760,370 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0124,229,988 - 24,232,144 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4122,265,326 - 22,267,482 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1122,268,307 - 22,270,422 (+)NCBI
Celera120,423,957 - 20,426,113 (+)NCBICelera
Cytogenetic Map1p12NCBI
Rps12
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543613,328,496 - 13,331,883 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543613,328,496 - 13,331,321 (+)NCBIChiLan1.0ChiLan1.0
RPS12
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25152,798,202 - 152,801,465 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16150,705,306 - 150,708,519 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06130,592,127 - 130,595,211 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16134,698,833 - 134,701,952 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6134,698,833 - 134,701,952 (+)Ensemblpanpan1.1panPan2
RPS12
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1125,836,409 - 25,839,148 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl125,836,500 - 25,839,146 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha126,846,557 - 26,849,258 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0125,987,363 - 25,990,084 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl125,987,416 - 25,990,082 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1125,867,211 - 25,869,912 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0125,757,886 - 25,760,595 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0126,059,799 - 26,062,521 (+)NCBIUU_Cfam_GSD_1.0
Rps12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946121,048,748 - 121,051,324 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936560828,032 - 830,540 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS12
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl130,920,808 - 30,923,658 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1130,920,804 - 30,923,392 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2134,439,083 - 34,441,684 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPS12
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11340,703,285 - 40,706,235 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1340,701,883 - 40,706,368 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604012,890,500 - 12,893,563 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000013542   ⟹   ENSHGLP00000013402
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478017,003,128 - 17,005,756 (+)Ensembl
RefSeq Acc Id: XM_004855444   ⟹   XP_004855501
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478017,003,033 - 17,005,756 (+)NCBI
RefSeq Acc Id: XM_021236896   ⟹   XP_021092555
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478017,003,023 - 17,039,997 (+)NCBI
RefSeq Acc Id: XM_021236897   ⟹   XP_021092556
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478017,003,023 - 17,039,997 (+)NCBI
RefSeq Acc Id: XM_021236898   ⟹   XP_021092557
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478017,003,024 - 17,035,391 (+)NCBI
RefSeq Acc Id: XM_021236900   ⟹   XP_021092559
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478017,003,025 - 17,015,123 (+)NCBI
RefSeq Acc Id: XM_021236901   ⟹   XP_021092560
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478017,003,616 - 17,039,997 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021092555   ⟸   XM_021236896
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021092556   ⟸   XM_021236897
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021092557   ⟸   XM_021236898
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021092559   ⟸   XM_021236900
- Peptide Label: isoform X4
- UniProtKB: G5BMM7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004855501   ⟸   XM_004855444
- Peptide Label: isoform X6
- UniProtKB: A0A0P6JDT6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021092560   ⟸   XM_021236901
- Peptide Label: isoform X5
RefSeq Acc Id: ENSHGLP00000013402   ⟸   ENSHGLT00000013542


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000009582 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000013542 ENTREZGENE
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro L30e-like UniProtKB/TrEMBL
  Ribosomal_eS12_CS UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
  Ribosomal_S12e UniProtKB/TrEMBL
KEGG Report hgl:101709655 UniProtKB/TrEMBL
NCBI Gene Rps12 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S12 UniProtKB/TrEMBL
  PTHR11843 UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
PRINTS RIBSOMALS12E UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S12E UniProtKB/TrEMBL
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt A0A0P6JDT6 ENTREZGENE, UniProtKB/TrEMBL
  G5BMM7 ENTREZGENE, UniProtKB/TrEMBL