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Gene: Cdh23 (cadherin-related 23) Rattus norvegicus

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Symbol:

Cdh23

Name:

cadherin-related 23

RGD ID:

619760

Description:

Predicted to enable calcium ion binding activity. Predicted to be involved in several processes, including equilibrioception; photoreceptor cell maintenance; and regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within several processes, including inner ear development; righting reflex; and sensory perception of sound. Located in apical part of cell. Human ortholog(s) of this gene implicated in Usher syndrome type 1D; autosomal recessive nonsyndromic deafness; autosomal recessive nonsyndromic deafness 12; and pituitary adenoma 5. Orthologous to human CDH23 (cadherin related 23); PARTICIPATES IN auditory mechanotransduction pathway; retinitis pigmentosa pathway; INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cadherin 23 (otocadherin); cadherin related 23; cadherin-23; cadherin-23-like; LOC103694885; otocadherin; W; Waltzing

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDH23 (cadherin related 23)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther
Mus musculus (house mouse):	Cdh23 (cadherin related 23 (otocadherin))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdh23 (cadherin related 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LOC100983880 (cadherin-23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDH23 (cadherin related 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101969963 (cadherin-23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDH23 (cadherin related 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDH23 (cadherin related 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdh23 (cadherin related 23)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CDH23 (cadherin related 23)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Cdh23 (cadherin related 23 (otocadherin))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdh23 (cadherin-related 23)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Cad88C	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Drosophila melanogaster (fruit fly):	Cad74A	Alliance	DIOPT (Ensembl Compara\|OrthoFinder)
Drosophila melanogaster (fruit fly):	Cad74A	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Cad87A	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cdh23	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	28,783,124 - 29,165,624 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	28,783,564 - 29,165,332 (-)	Ensembl				GRCr8
mRatBN7.2	20	28,240,643 - 28,622,490 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	28,240,645 - 28,622,419 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	29,255,533 - 29,637,791 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	28,641,839 - 29,024,097 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	29,384,303 - 29,766,584 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	29,857,018 - 30,263,758 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	29,857,637 - 29,990,111 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	31,668,747 - 32,073,985 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	27,622,049 - 28,016,145 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	29,678,961 - 30,059,893 (-)	NCBI		Celera
RGSC_v3.1	20	27,635,850 - 28,029,945 (-)	NCBI
Cytogenetic Map	20	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive nonsyndromic deafness (ISO)

autosomal recessive nonsyndromic deafness 12 (ISO,ISS)

beta-mannosidosis (ISO)

combined saposin deficiency (ISO)

Deafness (ISO)

fundus dystrophy (ISO)

genetic disease (ISO)

Hearing Loss (ISO)

Hearing Loss, Noise-Induced (ISO)

Hereditary Neoplastic Syndromes (ISO)

Meniere's disease (ISO)

multiple intestinal atresia (ISO)

Neurodevelopmental Disorders (ISO)

nonsyndromic deafness (ISO)

Nonsyndromic Sensorineural Hearing Loss (ISO)

optic atrophy (ISO)

pituitary adenoma 5 (ISO)

pneumoconiosis (ISO)

Presbycusis (ISO)

retinal disease (ISO)

retinitis pigmentosa (ISO)

retinitis pigmentosa 1 (ISO)

retinitis pigmentosa-deafness syndrome (ISO)

sensorineural hearing loss (ISO)

Stickler syndrome (ISO)

Usher syndrome (ISO)

Usher syndrome type 1 (ISO)

Usher syndrome type 1D (ISO,ISS)

Usher syndrome type 2 (ISO)

Usher syndrome type 2A (ISO)

Usher Syndrome, Type ID/F (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3,3',5,5'-tetrabromobisphenol A (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP,ISO)

acrylamide (EXP,ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

clorgyline (ISO)

Cuprizon (EXP)

decabromodiphenyl ether (EXP)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

diiodine (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenvalerate (EXP)

flavonoids (EXP)

gentamycin (EXP)

glyphosate (ISO)

L-citrulline (ISO)

Licochalcone B (ISO)

methapyrilene (ISO)

methimazole (EXP)

methoxychlor (EXP)

mono(2-ethylhexyl) phthalate (ISO)

okadaic acid (ISO)

PCB138 (ISO)

phenylmercury acetate (ISO)

propanal (ISO)

resveratrol (ISO)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

tebuconazole (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

auditory receptor cell stereocilium organization (ISO)

biological_process (ND)

calcium ion transport (IEA,ISO)

cell adhesion (IEA)

cell-cell adhesion (IBA,IEA)

cochlea development (ISO)

equilibrioception (IEA,ISO)

homophilic cell-cell adhesion (IEA)

inner ear auditory receptor cell differentiation (ISO)

inner ear development (ISO)

inner ear morphogenesis (ISO)

inner ear receptor cell stereocilium organization (ISO)

locomotory behavior (ISO)

photoreceptor cell maintenance (IEA,ISO)

regulation of cytosolic calcium ion concentration (IEA,ISO)

sensory perception of light stimulus (IEA,ISO)

sensory perception of sound (IEA,ISO)

Cellular Component

apical part of cell (IDA)

cell-cell junction (IBA)

centrosome (IEA,ISO)

cochlear hair cell ribbon synapse (IEA,ISO)

kinocilium (IEA,ISO)

membrane (IEA)

photoreceptor inner segment (IEA,ISO)

photoreceptor ribbon synapse (IEA,ISO)

plasma membrane (IEA)

stereocilium (IEA,ISO)

stereocilium tip (IEA,ISO)

synapse (IEA,ISO)

Molecular Function

calcium ion binding (IBA,IEA)

metal ion binding (IEA)

protein binding (IPI,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

auditory mechanotransduction pathway (ISO)

retinitis pigmentosa pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Mutations in Cdh23, encoding a new type of cadherin, cause stereocilia disorganization in waltzer, the mouse model for Usher syndrome type 1D.	Di Palma F, etal., Nat Genet. 2001 Jan;27(1):103-7.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Mechanotransduction by hair cells: models, molecules, and mechanisms.	Gillespie PG and Muller U, Cell. 2009 Oct 2;139(1):33-44. doi: 10.1016/j.cell.2009.09.010.
4.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
5.	Association of cadherin23 single nucleotide polymorphism with age-related hearing impairment in Han Chinese.	Hwang JH, etal., Otolaryngol Head Neck Surg. 2012 Sep;147(3):531-4. doi: 10.1177/0194599812446904. Epub 2012 May 11.
6.	Sensing sound: molecules that orchestrate mechanotransduction by hair cells.	Kazmierczak P and Muller U, Trends Neurosci. 2012 Apr;35(4):220-9. doi: 10.1016/j.tins.2011.10.007. Epub 2011 Dec 15.
7.	Cdh23 mutations in the mouse are associated with retinal dysfunction but not retinal degeneration.	Libby RT, etal., Exp Eye Res. 2003 Dec;77(6):731-9.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Cadherin 23 is a component of the transient lateral links in the developing hair bundles of cochlear sensory cells.	Michel V, etal., Dev Biol 2005 Apr 15;280(2):281-94.
10.	Mouse Genome Database (MGD)	Mouse Genome Database (MGD)
11.	Identification of three novel non-classical cadherin genes through comprehensive analysis of large cDNAs.	Nakajima D, etal., Brain Res Mol Brain Res 2001 Oct 19;94(1-2):85-95.
12.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
13.	Association of cadherin 23 with polygenic inheritance and genetic modification of sensorineural hearing loss.	Noben-Trauth K, etal., Nat Genet 2003 Sep;35(1):21-3. Epub 2003 Aug 10.
14.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
15.	GOA pipeline	RGD automated data pipeline
16.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
18.	Comprehensive gene review and curation	RGD comprehensive gene curation
19.	Cyclic nucleotide-gated channel alpha-3 (CNGA3) interacts with stereocilia tip-link cadherin 23 + exon 68 or alternatively with myosin VIIa, two proteins required for hair cell mechanotransduction.	Selvakumar D, etal., J Biol Chem. 2013 Mar 8;288(10):7215-29. doi: 10.1074/jbc.M112.443226. Epub 2013 Jan 17.
20.	Distribution and frequencies of CDH23 mutations in Japanese patients with non-syndromic hearing loss.	Wagatsuma M, etal., Clin Genet. 2007 Oct;72(4):339-44.
21.	Photoreceptor degeneration: genetic and mechanistic dissection of a complex trait.	Wright AF, etal., Nat Rev Genet. 2010 Apr;11(4):273-84. doi: 10.1038/nrg2717.
22.	[Association of cadherin CDH23 gene polymorphisms with noise induced hearing loss in Chinese workers].	Yang M, etal., Wei Sheng Yan Jiu. 2006 Jan;35(1):19-22.

Additional References at PubMed

PMID:7610888	PMID:8790740	PMID:9039475	PMID:9325047	PMID:9447922	PMID:10452381	PMID:11322776	PMID:11386759	PMID:12121736	PMID:12485990	PMID:13336002	PMID:14578428
PMID:14759567	PMID:15537665	PMID:15820310	PMID:15882574	PMID:15925194	PMID:16481439	PMID:16679490	PMID:16962269	PMID:17050716	PMID:17234811	PMID:17329413	PMID:18339676
PMID:19756182	PMID:23217710	PMID:24920589

Genomics

Comparative Map Data

Cdh23
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	28,783,124 - 29,165,624 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	20	28,783,564 - 29,165,332 (-)	Ensembl				GRCr8
mRatBN7.2	20	28,240,643 - 28,622,490 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	28,240,645 - 28,622,419 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	20	29,255,533 - 29,637,791 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	28,641,839 - 29,024,097 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	29,384,303 - 29,766,584 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	29,857,018 - 30,263,758 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	29,857,637 - 29,990,111 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	20	31,668,747 - 32,073,985 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	20	27,622,049 - 28,016,145 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	20	29,678,961 - 30,059,893 (-)	NCBI		Celera
RGSC_v3.1	20	27,635,850 - 28,029,945 (-)	NCBI
Cytogenetic Map	20	q11	NCBI

CDH23
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	71,396,920 - 71,815,947 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	71,396,920 - 71,815,947 (+)	Ensembl			hg38	GRCh38
GRCh37	10	73,156,677 - 73,575,704 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	72,826,697 - 73,245,710 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	10	72,826,696 - 73,076,543	NCBI
Celera	10	66,439,492 - 66,858,274 (+)	NCBI		Celera
Cytogenetic Map	10	q22.1	NCBI
HuRef	10	67,150,783 - 67,156,961 (+)	NCBI		HuRef
CHM1_1	10	73,439,263 - 73,857,682 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	10	72,266,464 - 72,686,680 (+)	NCBI		T2T-CHM13v2.0

Cdh23
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	60,138,527 - 60,532,291 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	60,138,527 - 60,532,269 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	10	60,302,748 - 60,696,513 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	60,302,748 - 60,696,490 (-)	Ensembl			mm10	GRCm38
MGSCv37	10	59,766,022 - 60,159,238 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	10	59,698,731 - 60,052,690 (-)	NCBI		MGSCv36	mm8
Celera	10	61,400,142 - 61,796,629 (-)	NCBI		Celera
Cytogenetic Map	10	B4	NCBI
cM Map	10	30.11	NCBI

Cdh23
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	19,684,473 - 20,003,819 (-)	Ensembl
ChiLan1.0	NW_004955437	19,683,792 - 20,044,718 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC100983880
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	83,888,821 - 83,966,281 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	83,894,144 - 83,971,602 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	67,866,979 - 68,286,008 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	70,391,661 - 70,810,240 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	70,434,801 - 70,810,240 (+)	Ensembl			panPan2	panpan1.1

CDH23
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	22,206,972 - 22,570,875 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	22,207,001 - 22,571,131 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	22,343,327 - 22,708,459 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	22,485,192 - 22,847,328 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	22,438,303 - 22,847,265 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	22,382,421 - 22,753,409 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	22,588,293 - 22,952,028 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	22,941,027 - 23,306,533 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101969963
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	58,586,064 - 58,899,858 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936521	7,010,360 - 7,340,842 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936521	7,078,874 - 7,285,361 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDH23
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	74,223,089 - 74,733,834 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	14	74,267,547 - 74,734,623 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	80,226,063 - 80,626,249 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDH23
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	59,475,126 - 59,893,824 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666048	20,118,874 - 20,208,512 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdh23
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	5,393,733 - 5,724,876 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	5,356,006 - 5,725,774 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdh23
2259 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	140
Count of miRNA genes:	116
Interacting mature miRNAs:	123
Transcripts:	ENSRNOT00000048029
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4889610	Pancm3	Pancreatic morphology QTL 3	3.75	0.001	pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	20	4189476	49189476	Rat
2303587	Bw93	Body weight QTL 93	13		body mass (VT:0001259)	body weight (CMO:0000012)	20	26689362	56021148	Rat
1641915	Colcr9	Colorectal carcinoma resistance QTL 9	2.97	0.0024	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	20	1	33724594	Rat
4889870	Pur30	Proteinuria QTL 30	19	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	20	8043920	29865039	Rat
7411668	Foco32	Food consumption QTL 32	8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	36600300	Rat
2305926	Iddm37	Insulin dependent diabetes mellitus QTL 37	6		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	20	1533083	46533083	Rat
1558640	Prcs2	Prostate cancer susceptibility QTL 2	3.3		prostate integrity trait (VT:0010571)	percentage of study population developing ventral prostate tumorous lesions during a period of time (CMO:0000943)	20	1	34066551	Rat
8694189	Bw153	Body weight QTL 153	3.13	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	20	1	29193376	Rat
2303626	Vencon10	Ventilatory control QTL 10		0.001	respiration trait (VT:0001943)	respiration rate (CMO:0000289)	20	20745585	56021148	Rat
1598869	Memor6	Memory QTL 6	3.1		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	20	26689362	56021148	Rat
1598870	Bp289	Blood pressure QTL 289	2.4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	20	8216359	53216359	Rat
9590109	Sffal8	Serum free fatty acids level QTL 8	5.32	0.01	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	20	1	29193376	Rat
9589155	Insul32	Insulin level QTL 32	6.38	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	20	1	29193376	Rat
9590275	Scort15	Serum corticosterone level QTL 15	3.48	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	29193376	Rat
1598858	Cm61	Cardiac mass QTL 61	3.6		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	20	8216359	53216359	Rat
7411650	Foco23	Food consumption QTL 23	20.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	20	1	29193376	Rat
1331747	Hrtrt16	Heart rate QTL 16	3.163		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	20	26792353	56021148	Rat
1598816	Memor12	Memory QTL 12	2.4		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	20	12243242	49189476	Rat
2303578	Gluco50	Glucose level QTL 50	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	20	26689362	56021148	Rat
6893685	Bw111	Body weight QTL 111	2.7	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	20	1	32578510	Rat
9590252	Scort12	Serum corticosterone level QTL 12	20.46	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	20	1	36600300	Rat
2300188	Bmd68	Bone mineral density QTL 68	6.4	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	20	26689362	56021148	Rat

Markers in Region

D20Got108

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	28,540,995 - 28,541,219 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	30,181,841 - 30,182,064	NCBI	Rnor6.0
Rnor_5.0	20	31,992,210 - 31,992,433	UniSTS	Rnor5.0
RGSC_v3.4	20	27,934,411 - 27,934,634	UniSTS	RGSC3.4
Celera	20	29,978,381 - 29,978,604	UniSTS
Cytogenetic Map	20	q11	UniSTS

RH128021

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	28,240,158 - 28,240,358 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	29,856,534 - 29,856,733	NCBI	Rnor6.0
Rnor_5.0	20	31,668,263 - 31,668,462	UniSTS	Rnor5.0
RGSC_v3.4	20	27,621,565 - 27,621,764	UniSTS	RGSC3.4
Celera	20	29,678,477 - 29,678,676	UniSTS
RH 3.4 Map	2	1521.6	UniSTS
Cytogenetic Map	20	q11	UniSTS

RH131718

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	20	28,303,636 - 28,303,837 (+)	MAPPER	mRatBN7.2
Rnor_6.0	20	29,919,756 - 29,919,956	NCBI	Rnor6.0
Rnor_5.0	20	31,731,221 - 31,731,421	UniSTS	Rnor5.0
RGSC_v3.4	20	27,684,647 - 27,684,847	UniSTS	RGSC3.4
Celera	20	29,741,790 - 29,741,990	UniSTS
Cytogenetic Map	20	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	66	163	79	78	47	92	47	6	342	191	11	142	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_053644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039098377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278915	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278917	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278921	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278922	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278926	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063278928	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AB053447	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000048029 ⟹ ENSRNOP00000048338

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	28,784,183 - 29,165,332 (-)	Ensembl
mRatBN7.2 Ensembl	20	28,241,262 - 28,622,419 (-)	Ensembl
Rnor_6.0 Ensembl	20	29,857,637 - 29,990,111 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100038 ⟹ ENSRNOP00000086738

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	28,783,564 - 29,165,332 (-)	Ensembl
mRatBN7.2 Ensembl	20	28,240,645 - 28,622,419 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118579 ⟹ ENSRNOP00000096099

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	20	28,783,564 - 29,165,332 (-)	Ensembl
mRatBN7.2 Ensembl	20	28,240,645 - 28,622,419 (-)	Ensembl

RefSeq Acc Id:

NM_053644 ⟹ NP_446096

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,783,564 - 29,165,332 (-)	NCBI
mRatBN7.2	20	28,240,643 - 28,622,419 (-)	NCBI
Rnor_6.0	20	29,857,018 - 30,263,758 (-)	NCBI
Rnor_5.0	20	31,668,747 - 32,073,985 (-)	NCBI
RGSC_v3.4	20	27,622,049 - 28,016,145 (-)	RGD
Celera	20	29,678,961 - 30,059,893 (-)	RGD

Sequence:

show sequence

GCGGCTCGGAGCAAGACACGATGCACGGCCAGGGAACACGTCCCACAGCAGCCGAGCGCTGAGC
TGCGCAACAGAGAGCGGGCCCCGGGGATGGAGCACGCTAGTCCGGACTCCCCGTGTGCCCCACA
CGGGGCAAGCCTTTTCTGATCTGGCTGCGCGTCTGAAGTTGCAGCCAGCGAGCAGCTCGCGGGG
ATCGGGCCGCCCGAGTGGCTCCCAGAGAGACCTTCGCGCCGGCGACGAGAAGCGGCGGTGGCCA
AGACTGGAGTAGGTGGCCCGTGGGGGCAGAGTCGGTTGCGAGCAGATCCCGAGGCGCGGCGCAA
CGCTGCTCCACCTGCGCACACGGAGCCATGAGGCACCCCCCTGTCACTTGGTGTGCCATGCTCT
GGCTTCTCATGCTGGTGTCCGGATCCTGGGGCCAGGTGAACCGACTACCTTTTTTCACCAATCA
CTTCTTTGACACGTACCTGCTCATCAGTGAAGACACTCCTGTGGGTTCTTCTGTGACCCAGTTG
CTGGCCCGAGACATGGACAATGACCCCTTGGTGTTCGGCGTGTCTGGGGAGGAGGCCTCCCGCT
TCTTTGCCGTGGAGCCTGACACGGGTGTGGTGTGGCTCCGGCAGCCACTGGACAGAGAGACTAA
GTCTGAGTTCACAGTGGAGTTCTCCGTCAGTGACCACCAAGGGGTGATCACAAGGAAGGTGAAT
ATCCAAGTTGGAGACGTGAACGACAATGCACCCACATTCCACAACCAGCCCTACAGCGTGCGCA
TCCCTGAAAACACACCAGTGGGGACACCCATCTTCATCGTCAACGCCACTGATCCTGACCTGGG
CGCAGGGGGCAGTGTCCTCTACTCCTTCCAGCCCCCCTCTCAGTTCTTCGCCATCGACAGTGCC
CGAGGCATAGTCACCGTGATCCGGGAGCTGGACTATGAGGTCACGCAGGCGTACCAGCTCACAG
TCAATGCCACGGATCAAGACAAGACCAGACCTCTGTCTACATTAGCCAACCTGGCCATCATCAT
CACGGACGTACAAGACATGGACCCCATCTTCATCAATCTGCCCTACAGTACCAACATCTATGAG
CACTCTCCCCCGGGCACGACTGTGCGGGTGATCACTGCTGTGGATCAGGATAAGGGACGGCCCC
GGGGGATTGGCTACACTATTGTCTCAGGGAATACGAACAGCATCTTTGCCCTGGACTACATCAG
CGGGGCTCTCACCCTGAATGGCCTGCTGGACCGGGAGAACCCCCTGTACAGCCACGGCTTCATC
CTGACGGTGAAGGGCACTGAGCTGAATGATGATCGTAGTCCGTCTGACGCCACCGTCACCACGA
CCTTCAACATCCTGGTTATCGACATCAATGACAATGCCCCGGAGTTCAACAGCTCTGAGTACAG
CGTGGCCATTACTGAGCTGGCACAGGTCGGCTTTGCCCTCCCTCTCTTCATCCAGGTGGTGGAC
AAGGATGAGGGTCTAAACAGCATGTTCGAGGTGTACCTGGTGGGCAACAACTCCCACCACTTCA
TCATCTCCCCAACCTCCGTCCAGGGGAAAGCAGACATCCGCATCCGAGTGGCAATCCCACTGGA
CTACGAGACCGTGGACAGATACGACTTTGACCTCTTTGCCAACGAGAGCGTACCCGACCACGTG
GGCTACGCCAAGGTGAAGATTACGCTCATTAATGAAAATGACAACCGGCCCATCTTCAGCCAGC
CCCTCTACAATGTCAGCCTGTATGAAAACATCACCGTGGGGACCTCCGTGCTGACAGTCCTGGC
AACAGACAATGACGTGGGCACTTTTGGGGAAGTCAACTACTTCTTCAGTGATGACCCCGACAGG
TTCTCACTGGACAAGGACACAGGCCTCATCATGCTTATAGCCCGGCTGGACTATGAGCTTATCC
AGCGTTTCACCTTGACTGTCATTGCCCGGGATGGTGGCGGTGAGGAGACCACAGGCCGGGTCCG
GATCAATGTGCTGGATGTCAACGACAATGTGCCCACCTTCCAGAAGGATGCCTACGTGGGTGCT
CTGAGGGAGAATGAGCCATCTGTCACACAGCTGGTGCGGCTCAGGGCAACAGATGAAGACTCCC
CTCCCAACAACCTGATCACCTACAGCATCGTCAACGCGTCCGCCTTCGGCAGCTACTTTGACAT
CAGTGTGTATGAAGGCTATGGAGTGATCAGTGTGAGCCGCCCACTGGATTATGAACAGATACCC
AATGGGCTGATATACCTAACCGTCATGGCCAAGGATGCTGGCAACCCTCCGCTCTACAGCACCG
TCCCTGTCACCATTGAGGTGTTTGATGAGAACGACAACCCTCCCACCTTCAGCAAGCCTGCCTA
CTTCGTGTCTGTGGTGGAGAACATCATGGCAGGAGCCACAGTGTTGTTCCTAAATGCCACGGAC
CTGGACCGCTCCCGGGAGTATGGGCAGGAGTCTATCATCTATTCGCTGGAGGGCTCCTCACAGT
TCCGCATCAATGCCCGCTCTGGAGAAATCACCACCACGTCTCTGCTGGACCGAGAGACCAAAGC
TGAATACATACTCATTGTGCGTGCTGTGGATGGGGGTGTGGGCCACAACCAGAAAACTGGCATT
GCCACAGTGAATGTCACCCTCCTAGACATCAATGACAACCACCCCACCTGGAAGGATGCTCCCT
ACTACATCAACCTGGTGGAGATGACGCCTCCAGACTCTGATGTGACCACGGTGGTAGCTGTGGA
CCCAGATCTGGGGAAGAATGGCACCCTGGTGTACAGCATCCAGCCCCCCAACAAGTTCTATAGT
CTGAACAGCACCACAGGCAAGATCCGCACCACCCACGTCATGCTGGACCGAGAGAACCCTGACC
CCGTGGAGGCGGAGCTCATGCGCAAGATCATTGTCTCTGTCACGGACTGTGGTAGACCCCCCCT
GAAGGCCACCAGCAGTGCCACAGTCTTTGTGAACCTCTTGGATCTCAATGACAACGACCCCACC
TTCCAGAACCTGCCTTTTGTGGCTGAGGTTCTTGAGGGCACCCCTGCAGGGGTCTCTGTCTACC
AAGTGGTGGCCATCGATCTGGATGAGGGCCTGAATGGACTGGTGTCCTATCGCATGCAAGTGGG
CATGCCCCGCATGGACTTTGTCATCAACAGCACCAGTGGTGTGGTCACGACCACAGCCGAGTTG
GACCGGGAGCGCATCGCCGAGTACCAGCTGCGGGTGGTGGCCAGCGATGCGGGCACACCTACCA
AGAGCTCCACCAGCACCCTCACCATCCGCGTGTTGGATGTGAACGATGAGACGCCCACCTTCTT
CCCTGCCGTGTACAACGTGTCCGTGTCTGAGGATGTTCCCCGTGAGTTCCGTGTGGTCTGGCTG
AACTGCACAGACAATGACGTCGGTCTCAATGCGGAACTCAGCTACTTCATCACAGCGGGAAATG
TGGACGGGAAGTTTAGTGTGGGCTACCGTGATGCCGTGGTGAGAACCGTGGTCGGCCTGGACCG
TGAGACCACAGCTGCGTACACACTGGTGCTGGAGGCTATCGACAATGTCCCTGTAGGCAAGCGG
CGCACAGGTACGGCCACCGTGTTTGTCACAGTTCTGGATGTGAACGACAACCGGCCCATCTTCC
TGCAAAGCAGCTATGAGGCCAGTGTCCCAGAAGACATCCCCGAGGGCCACAGCATTGTGCAGCT
GAAAGCCACAGATGCAGACGAGGGCGAGTTTGGACGTGTCTGGTACCGCATCCTCCATGGTAAC
CATGGCAACAACTTCCGCCTCCACGTCAGCAGCGGGCTCCTGGTGCGAGGCCCAAGGCCCCTGG
ACAGGGAGCGAAACTCGTCCCATGTGCTGATGGCAGAAGCCTACAACCACGACCTGGGGCCCAT
GCGGAGCTCGGTCAGGGTGATCGTGTATGTGGAAGATGTCAACGATGAGGCCCCTGTGTTCACA
CAGCAGCAGTACAATCGCCTGGGCCTTCGAGAGACAGCAGGCATCGGCACCTCAGTCATCGTTG
TCCGAGCCACCGACAGAGACACTGGGGACGGTGGCCTGGTGAACTACCGCATCCTGTCGGGCGC
AGAGGGCAAGTTTGAGATTGACGAGAGCACAGGGCTCATCGTGACGGTTGACTATCTGGACTAC
GAGACCAAGACCAGCTATCTGATGAACGTGTCAGCCACAGACGGTGCACCCCCCTTCAACCAGG
GCTTCTGCAGCGTCTACGTGACACTTCTCAACGAGCTGGATGAGGCTGTTCAGTTCTCCAATGC
CTCCTATGAGGCAGTCATCATGGAGAATCTGGCTCTGGGGACCGAGATCGTGCGGGTGCAAGCC
TATTCCATTGATAACCTCAATCAAATCACCTACCGCTTTGACGCCTATACCAGCGCCCAGGCCA
AAGCCCTCTTCAAGATAGATGCCATCACGGGCGTGATCACAGTCAAAGGCTTGGTCGACAGGGA
GAAGGGCGACTTCTACACATTGACGGTCGTGGCAGATGATGGTGGCCCCAAGGTGGACTCTACT
GTGAAGGTCTACGTCACTGTTCTGGATGAAAATGATAACAGCCCACGCTTTGACTTCACCTCTG
ATTCGGCCATCAGTGTGCCTGAGGACTGCCCTGTAGGCCAACGAGTAGCCACTGTCAAGGCCCG
GGACCCTGATGCTGGCAGCAACGGTCAGGTGGTCTTCTCCCTGGCCTCCGGTAACATTGCTGGG
GCCTTTGAGATTATCACCAGCAATGACTCCATTGGTGAAGTGTTTGTGGCTAAGCCCCTGGACA
GGGAGGAACTGGACCACTACATCCTCAAGATTGTAGCTTCTGACCGTGGCACTCCTCCACGGAA
GAAAGACCACATCTTACAGGTGACCATTCTGGATGTCAATGACAACCCTCCAGTGATTGAGAGC
CCCTTTGGGTACAACGTCAGTGTGAATGAGAATGTGGGTGGAGGCACCTCAGTAGTCCAGGTGA
GAGCCACCGACCGTGACATCGGGATCAACAGCGTCCTGTCCTATTATATCACGGAGGGCAATGA
GGACATGACTTTCCGTATGGACCGCATCAGCGGTGAGATTGCTACACGGCCTGCTCCACCCGAC
CGTGAGCGCCAGAACTTCTACCACCTGGTGGTCACTGTGGAAGACGAGGGCACCCCCACACTAT
CGGCTACCACCCATGTGTACGTGACTATCGTGGACGAGAATGACAATGCTCCTGTGTTCCAGCA
GCCACATTATGAGGTGGTGCTGGACGAGGGCCCGGACACAGTCAACACCAGCCTCATCACCGTC
CAGGCGCTGGACCTGGATGAGGGCCCGAATGGCACTGTTACCTATGCCATTGTGGCAGGCAATA
TCATCAATACCTTCCGAATCAACAGGCGCACGGGTGTCATTACTGCTGCCAAGGAGCTAGACTA
TGAGATCAGTCATGGCCGCTATACCCTGATTGTCACTGCCACAGACCAGTGTCCCATCTTGTCC
CACCGCCTCACCTCTACTACCACAGTGCTCGTGAACGTGAATGACATCAATGACAATGTGCCCA
CTTTCCCTCGGGACTATGAAGGACCATTCGATGTCACTGAGGGCCAACCAGGGCCCAGAGTGTG
GACATTCCTGGCCCATGACCGGGACTCCGGTCCCAATGGGCAGGTGGAGTACAGTGTTGTGGAT
GGAGACCCACTGGGGGAGTTTGTGATCTCTCCTGTGGAGGGTGTGCTGAGGGTCCGGAAGGATG
TAGAACTGGATCGGGAGACCATCGCCTTCTACAATCTGACCATCTGTGCCCGAGACAGGGGGGT
GCCGCCACTCAGCTCCACGATGCTGGTGGGAATCCGAGTGCTGGACATCAATGACAATGACCCG
GTGCTGTTGAATCTTCCCATGAACATCACCATCAGTGAGAACAGCCCGGTCTCCAGCTTCGTCG
CCCACGTCCTGGCCAGCGACGCTGACAGTGGCTGCAATGCCCTGCTCACCTTCAACATCACCGC
TGGCAACCGGGAGCGGGCCTTCTTCATCAATGCCACGACAGGGATCGTCACTGTCAACCGGCCC
CTGGACCGAGAGCGCATCCCAGAATACAGGCTGACCGTTTCTGTAAAGGACAACCCAGAGAACC
CACGCATAGCCAGGAAGGATTTTGACTTACTGCTGGTCTCTCTGGCTGATGAAAATGACAACCA
CCCCCTCTTCACTGAGGGCACGTACCAGGCCGAGGTGATGGAGAACTCTCCTGCTGGGACACCT
CTCACCGTGCTCAATGGACCTATCCTGGCCCTGGATGCTGATGAAGATGTGTACGCTGTAGTCA
CGTATCAACTCCTGGGCACTCACAGCGACCTGTTTGTTATTGACAATAGCACGGGCGTGGTGAC
TGTGAGGTCCGGGGTCATCATCGACCGGGAGGCCTTCTCACCCCCATTCCTGGAGTTGCTGCTG
TTGGCTGAGGACGTGGGACAACTCAATGGCACGGCCTACCTGTTCATCACTATCCTAGATGACA
ATGACAACTGGCCCACCTTCAGTCCTCCTGCTTACACTGTCCACCTGCTGGAGAACTGCCCACC
AGGATTCTCAGTCCTTCAGATCACAGCCACAGATGAGGACAGCGGCCTCAATGGGGAGCTGGTC
TACCGAATAGAAGCCGGGGCTCAGGACCGCTTCCTCATCCATCCAGTCACAGGAGTCATCCGTG
TTGGCAATGCCACCATTGACAGAGAAGAGCAGGAATCCTACAGGCTGACGGTGGTGGCCACCGA
CCGGGGCACTGTTCCCTTGTCGGGCACAGCCACCGTCACCATCCTGATCGATGACATCAATGAC
TCCCGCCCTGAGTTCCTCAACCCTATCCAGACAGTGAGCGTGCTGGAATCCACAGAGCCAGGCA
CTGTCATTGCTAACGTCACTGCCATCGACCTCGACCTCAACCCCAAACTGGAGTATCACATCCT
TAGCATCGTGGCCAAGGACGACACTGACCGCCTGGTGCCTGACCAGGAAGATGCCTTTGCTGTG
AATATCAATACAGGGTCCGTGATAGTGAAGTCCCCTCTGAACCGCGAGCTGGTTGCTACCTATG
AGGTCACGCTCTCAGTAATCGACAATGCCAGCGACCTCCCAGAGCGTTCTGTCAGTGTGCCAAA
CGCCAAGCTCACGGTCAACATCCTGGATGTCAATGACAATACACCGCAGTTCAAGCCCTTTGGA
ATCACCTACTACACAGAGCGGGTCCTGGAGGGGGCCACCCCAGGCACAACGCTCATTGCTGTGG
CCGCCGTTGATCCCGACAAGGGCCTTAACGGGCTGATCACCTACACCCTGCTAGACCTCATACC
CCCAGGCTATGTCCAGCTCGAAGACTCTTCAGCAGGGAAGGTCATCGCCAACCGTACGGTGGAC
TACGAGGAGGTTCACTGGCTTAACTTCACCGTGAGGGCCTCAGACAATGGGTCCCCACCCCGGG
CAGCTGAGATCCCTGTCTACCTGGAAATTGTAGACATTAATGACAACAACCCCATCTTTGATCA
GCTCTCCTACCAGGAGGCTGTTTTTGAGGATGTAGCTGTGGGCACGGTCATCCTGAGGGTTACA
GCTACGGATGCTGACTCAGGCAACTTTGCTCTCATCGAGTACAGCCTGGTGGATGGAGAGGGCA
AATTTGCCATCAACCCCAACACTGGTGACATCTATGTGCTGTCCTCTCTGGACCGAGAGAAGAA
GGACCACTACATCCTAACTGCTTTGGCCAAAGACAACCCTGGCGATGTGGCCAGTAACCGTCGC
GAGAACTCGGTGCAGGTGGTGATCCGAGTACTTGATGTCAATGACTGTCGGCCTCAGTTCTCCA
AGCCACAGTTCAGCACAAGTGTGTACGAGAATGAGCCAGCAGGTACTTCAGTCATCACCATGCT
GGCCACTGACCAGGACGAGGGCTCTAATGGCCAGCTGACCTACTCTCTTGAGGGTCCCGGAATG
GAGGCTTTCTCTGTGGACATGGACTCGGGCCTGGTGACCACGCAGCGGCCACTACAGTCCTATG
AGAGGTTCAACCTGACCGTAGTGGCTACAGATGGTGGGGAGCCCCCACTCTGGGGCACCACAAT
GCTCCTAGTGGAAGTCATCGATGTCAATGACAACCGCCCCGTCTTCGTGCGCCCACCCAATGGC
ACCATTCTGCACATCAAAGAGGAGATCCCGCTACGTTCCAATGTGTATGAAGTCTATGCTACAG
ACAAGGATGAAGGCCTCAACGGGGCAGTACGCTACAGCTTCCTGAAGTCAACAGGCAACCGTGA
CTGGGAGTACTTCACCATCGACCCAATTAGTGGCCTCATCCAGACAGCGCAGCGCCTGGACCGT
GAGAAGCAGGCAGTGTACAGTCTCATCTTGGTGGCCAGCGACCTGGGCCAGCCAGTGCCATACG
AGACGATGCAGCCATTGCAGGTGGCCCTGGAGGACATCGATGACAATGAGCCCCTCTTTGTGAG
GCCTCCTAAGGGAAGCCCTCAGTACCAACTGCTAACAGTGCCTGAACACTCCCCCCGTGGCACC
CTTGTGGGCAACGTGACAGGCGCGGTGGACGCAGATGAAGGTCCCAATGCCATTGTGTACTACT
TCATTGCAGCTGGTAACGAGGACAAGAATTTCCACCTACAACCTGACGGACGCCTGCTAGTGCT
TAGAGACCTGGATCGGGAGACGGAAGCCATCTTCTCCTTCATTGTCAAGGCGTCCAGCAATCGC
AGTTGGACCCCTCCCCGAGGACCCTCCCCAGCCCTCGATCTGCTGACCGATCTCACCCTGCAGG
AGGTGCGCGTTGTGCTGGAGGACATCAATGACCAACCGCCACGCTTCACCAAGGCTGAGTATAC
CGCAGGAGTGGCCACCGACGCCAAGGTAGGCTCGGAGTTGATCCAGGTGCTGGCCCTGGATGCA
GACATTGGCAACAACAGCCTGGTCTTCTATGGCATTCTGGCTATCCACTACTTCCGGGCCCTGG
CCAATGACTCCGAGGATGTGGGTCAGGTCTTCACCATGGGGAGTGTGGACGGCATCCTGCGTAC
CTTTGACCTCTTCATGGCCTACAGCCCTGGCTACTTTGTGGTAGACATCGTGGCCCGAGACCTG
GCCGGTCACAACGATACAGCCATCATTGGCATCTACATCCTGAGGGATGACCAGCGCGTTAAGA
TAGTCATCAACGAGATCCCAGACCGTGTGCGTGGCTTTGAGGAGGAGTTCATTCGCCTGCTGTC
CAACATCACAGGCGCCATCGTCAACACTGATGACGTGCAGTTCCATGTGGATATGAAAGGAAGA
GTGAATTTTGCACAGACAGAGCTGCTCATCCACGTGGTCAACCGCGACACGAACCGCATCCTGG
ATGTGGACAGGGTCATCCAGATGATTGATGAGAACAAGGAACAACTTCGAAACCTCTTCCGGAA
CTACAATGTACTGGACGTGCAGCCTGCCATCTCTGTCCAGCTGCCAGACGACATGTCTGCCCTG
CAGATGGCCATCATTGTCCTGGCCATCCTTCTCTTCTTGGCTGCCATGCTCTTTGTCCTCATGA
ACTGGTACTACAGGACCATACACAAGAGAAAGCTAAAGGCCATTGTGGCTGGTTCTGCTGGGAA
CCGTGGCTTCATTGACATCATGGACATGCCCAATACCAACAAATACTCCTTCGATGGAGCCAAC
CCTGTGTGGCTGGACCCCTTCTGCCGGAACCTGGAGCTGGCTGCACAGGCTGAACACGAGGATG
ACCTCCCTGAGAACCTGAGTGAGATCGCAGACCTGTGGAACAGCCCCACCCGCACCCATGGAAC
TTTTGGACGTGAGCCCGCGGCAGTCAAACCTGAAGATGACAGATACCTGCGGGCAGCCATCCAG
GAGTATGACAACATAGCCAAGCTGGGTCAGATCATTCGAGAAGGACCTATTAAGCTGATCCACA
CTGACCTGGAGGAGGAGCCTGGCGACCACAGCCCAGGCCAGGGCAGCCTCCGTTTCCGACACAA
GCCACCCACGGAACTCAAGGGGCCAGATGGAATCCACATAGTTCACGGTAGCACGGGCACACTG
CTGGCCACTGATCTCAACAGCTTGCCTGAGGACGACCAGAAGGGGCTAGACCGCTCACTGGAGA
CTCTGACAGCCTCTGAAGCCACTGCCTTTGAACGCAATGCCCGCACCGAGTCGGCCAAGTCCAC
CCCTCTGCATAAGCTTCGAGACGTCATCATGGAGAGCCCCCTGGAAATCACGGAACTGTGACGG
ACAGCAAGGCTTGCTGCTGAAGCAGGGCCATGGCCGGCCCTTCGCCCAGGGCAGCAGCCTTTGT
GAGTGACCCTGGGCTGGCCCTGGCAGCCTGCACAGTTGCTCAGATTTGCATCCTGCCAGAAACT
GATTCAGCATCTGATCTCTACCTTCATAAAATTGGTTATTTTTTTAAGAAAACTTTAAAAATGC
TAAGTGTCTAAGGACAAGGCAAGGACGAGCGCTGGGGAAGCCCCAGAGACTTAAGACTAGCTGA
TGCCTCCAAGAAACAGGGGTCCAGCACAGAACTGACAACCCAGCTGACCCACCTCGCCTCAGTT
CAAGCCCCACTGTACTTCTGCCTCTGGACATCCGGGCGGCTCCCTGCCCCTGCACACACACGTG
GATGAGGCAACCAAGCGTCCACCCCATCTCCCCTCATCGTCTTGAGGTGCCCAGTTGACATGAC
TGATGTCCCCTGGGTTTTGAATGTAGAGTGTTTGTGTGTATCCCTTTTCTAAATTAAGTTATCC
CCTCAAGATTTCCTCCAGGTTCTGTTTAACTGATACTCAGTCAAAGTTTCTGGAATGCTCTGTT
TAAAAAAGCAACTCACCTGGAACCAGCAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039098377 ⟹ XP_038954305

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,874,489 - 29,165,624 (-)	NCBI
mRatBN7.2	20	28,335,235 - 28,622,488 (-)	NCBI

RefSeq Acc Id:

XM_063278914 ⟹ XP_063134984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,783,124 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278915 ⟹ XP_063134985

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,783,124 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278916 ⟹ XP_063134986

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,783,124 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278917 ⟹ XP_063134987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,783,124 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278918 ⟹ XP_063134988

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,783,124 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278919 ⟹ XP_063134989

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,783,124 - 28,990,841 (-)	NCBI

RefSeq Acc Id:

XM_063278920 ⟹ XP_063134990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,788,252 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278921 ⟹ XP_063134991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,790,978 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278922 ⟹ XP_063134992

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,805,506 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278923 ⟹ XP_063134993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,805,506 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278925 ⟹ XP_063134995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,850,461 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278926 ⟹ XP_063134996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,849,271 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278927 ⟹ XP_063134997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,850,461 - 29,165,624 (-)	NCBI

RefSeq Acc Id:

XM_063278928 ⟹ XP_063134998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	20	28,856,231 - 29,165,624 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_446096	(Get FASTA)	NCBI Sequence Viewer
	XP_038954305	(Get FASTA)	NCBI Sequence Viewer
	XP_063134984	(Get FASTA)	NCBI Sequence Viewer
	XP_063134985	(Get FASTA)	NCBI Sequence Viewer
	XP_063134986	(Get FASTA)	NCBI Sequence Viewer
	XP_063134987	(Get FASTA)	NCBI Sequence Viewer
	XP_063134988	(Get FASTA)	NCBI Sequence Viewer
	XP_063134989	(Get FASTA)	NCBI Sequence Viewer
	XP_063134990	(Get FASTA)	NCBI Sequence Viewer
	XP_063134991	(Get FASTA)	NCBI Sequence Viewer
	XP_063134992	(Get FASTA)	NCBI Sequence Viewer
	XP_063134993	(Get FASTA)	NCBI Sequence Viewer
	XP_063134995	(Get FASTA)	NCBI Sequence Viewer
	XP_063134996	(Get FASTA)	NCBI Sequence Viewer
	XP_063134997	(Get FASTA)	NCBI Sequence Viewer
	XP_063134998	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	BAB61904	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000096099
GenBank Protein	P58365	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_446096 ⟸ NM_053644
- Peptide Label:	precursor
- UniProtKB:	P58365 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MRHPPVTWCAMLWLLMLVSGSWGQVNRLPFFTNHFFDTYLLISEDTPVGSSVTQLLARDMDNDP LVFGVSGEEASRFFAVEPDTGVVWLRQPLDRETKSEFTVEFSVSDHQGVITRKVNIQVGDVNDN APTFHNQPYSVRIPENTPVGTPIFIVNATDPDLGAGGSVLYSFQPPSQFFAIDSARGIVTVIRE LDYEVTQAYQLTVNATDQDKTRPLSTLANLAIIITDVQDMDPIFINLPYSTNIYEHSPPGTTVR VITAVDQDKGRPRGIGYTIVSGNTNSIFALDYISGALTLNGLLDRENPLYSHGFILTVKGTELN DDRSPSDATVTTTFNILVIDINDNAPEFNSSEYSVAITELAQVGFALPLFIQVVDKDEGLNSMF EVYLVGNNSHHFIISPTSVQGKADIRIRVAIPLDYETVDRYDFDLFANESVPDHVGYAKVKITL INENDNRPIFSQPLYNVSLYENITVGTSVLTVLATDNDVGTFGEVNYFFSDDPDRFSLDKDTGL IMLIARLDYELIQRFTLTVIARDGGGEETTGRVRINVLDVNDNVPTFQKDAYVGALRENEPSVT QLVRLRATDEDSPPNNLITYSIVNASAFGSYFDISVYEGYGVISVSRPLDYEQIPNGLIYLTVM AKDAGNPPLYSTVPVTIEVFDENDNPPTFSKPAYFVSVVENIMAGATVLFLNATDLDRSREYGQ ESIIYSLEGSSQFRINARSGEITTTSLLDRETKAEYILIVRAVDGGVGHNQKTGIATVNVTLLD INDNHPTWKDAPYYINLVEMTPPDSDVTTVVAVDPDLGKNGTLVYSIQPPNKFYSLNSTTGKIR TTHVMLDRENPDPVEAELMRKIIVSVTDCGRPPLKATSSATVFVNLLDLNDNDPTFQNLPFVAE VLEGTPAGVSVYQVVAIDLDEGLNGLVSYRMQVGMPRMDFVINSTSGVVTTTAELDRERIAEYQ LRVVASDAGTPTKSSTSTLTIRVLDVNDETPTFFPAVYNVSVSEDVPREFRVVWLNCTDNDVGL NAELSYFITAGNVDGKFSVGYRDAVVRTVVGLDRETTAAYTLVLEAIDNVPVGKRRTGTATVFV TVLDVNDNRPIFLQSSYEASVPEDIPEGHSIVQLKATDADEGEFGRVWYRILHGNHGNNFRLHV SSGLLVRGPRPLDRERNSSHVLMAEAYNHDLGPMRSSVRVIVYVEDVNDEAPVFTQQQYNRLGL RETAGIGTSVIVVRATDRDTGDGGLVNYRILSGAEGKFEIDESTGLIVTVDYLDYETKTSYLMN VSATDGAPPFNQGFCSVYVTLLNELDEAVQFSNASYEAVIMENLALGTEIVRVQAYSIDNLNQI TYRFDAYTSAQAKALFKIDAITGVITVKGLVDREKGDFYTLTVVADDGGPKVDSTVKVYVTVLD ENDNSPRFDFTSDSAISVPEDCPVGQRVATVKARDPDAGSNGQVVFSLASGNIAGAFEIITSND SIGEVFVAKPLDREELDHYILKIVASDRGTPPRKKDHILQVTILDVNDNPPVIESPFGYNVSVN ENVGGGTSVVQVRATDRDIGINSVLSYYITEGNEDMTFRMDRISGEIATRPAPPDRERQNFYHL VVTVEDEGTPTLSATTHVYVTIVDENDNAPVFQQPHYEVVLDEGPDTVNTSLITVQALDLDEGP NGTVTYAIVAGNIINTFRINRRTGVITAAKELDYEISHGRYTLIVTATDQCPILSHRLTSTTTV LVNVNDINDNVPTFPRDYEGPFDVTEGQPGPRVWTFLAHDRDSGPNGQVEYSVVDGDPLGEFVI SPVEGVLRVRKDVELDRETIAFYNLTICARDRGVPPLSSTMLVGIRVLDINDNDPVLLNLPMNI TISENSPVSSFVAHVLASDADSGCNALLTFNITAGNRERAFFINATTGIVTVNRPLDRERIPEY RLTVSVKDNPENPRIARKDFDLLLVSLADENDNHPLFTEGTYQAEVMENSPAGTPLTVLNGPIL ALDADEDVYAVVTYQLLGTHSDLFVIDNSTGVVTVRSGVIIDREAFSPPFLELLLLAEDVGQLN GTAYLFITILDDNDNWPTFSPPAYTVHLLENCPPGFSVLQITATDEDSGLNGELVYRIEAGAQD RFLIHPVTGVIRVGNATIDREEQESYRLTVVATDRGTVPLSGTATVTILIDDINDSRPEFLNPI QTVSVLESTEPGTVIANVTAIDLDLNPKLEYHILSIVAKDDTDRLVPDQEDAFAVNINTGSVIV KSPLNRELVATYEVTLSVIDNASDLPERSVSVPNAKLTVNILDVNDNTPQFKPFGITYYTERVL EGATPGTTLIAVAAVDPDKGLNGLITYTLLDLIPPGYVQLEDSSAGKVIANRTVDYEEVHWLNF TVRASDNGSPPRAAEIPVYLEIVDINDNNPIFDQLSYQEAVFEDVAVGTVILRVTATDADSGNF ALIEYSLVDGEGKFAINPNTGDIYVLSSLDREKKDHYILTALAKDNPGDVASNRRENSVQVVIR VLDVNDCRPQFSKPQFSTSVYENEPAGTSVITMLATDQDEGSNGQLTYSLEGPGMEAFSVDMDS GLVTTQRPLQSYERFNLTVVATDGGEPPLWGTTMLLVEVIDVNDNRPVFVRPPNGTILHIKEEI PLRSNVYEVYATDKDEGLNGAVRYSFLKSTGNRDWEYFTIDPISGLIQTAQRLDREKQAVYSLI LVASDLGQPVPYETMQPLQVALEDIDDNEPLFVRPPKGSPQYQLLTVPEHSPRGTLVGNVTGAV DADEGPNAIVYYFIAAGNEDKNFHLQPDGRLLVLRDLDRETEAIFSFIVKASSNRSWTPPRGPS PALDLLTDLTLQEVRVVLEDINDQPPRFTKAEYTAGVATDAKVGSELIQVLALDADIGNNSLVF YGILAIHYFRALANDSEDVGQVFTMGSVDGILRTFDLFMAYSPGYFVVDIVARDLAGHNDTAII GIYILRDDQRVKIVINEIPDRVRGFEEEFIRLLSNITGAIVNTDDVQFHVDMKGRVNFAQTELL IHVVNRDTNRILDVDRVIQMIDENKEQLRNLFRNYNVLDVQPAISVQLPDDMSALQMAIIVLAI LLFLAAMLFVLMNWYYRTIHKRKLKAIVAGSAGNRGFIDIMDMPNTNKYSFDGANPVWLDPFCR NLELAAQAEHEDDLPENLSEIADLWNSPTRTHGTFGREPAAVKPEDDRYLRAAIQEYDNIAKLG QIIREGPIKLIHTDLEEEPGDHSPGQGSLRFRHKPPTELKGPDGIHIVHGSTGTLLATDLNSLP EDDQKGLDRSLETLTASEATAFERNARTESAKSTPLHKLRDVIMESPLEITEL hide sequence

Ensembl Acc Id:

ENSRNOP00000048338 ⟸ ENSRNOT00000048029

RefSeq Acc Id:	XP_038954305 ⟸ XM_039098377
- Peptide Label:	isoform X14

Ensembl Acc Id:

ENSRNOP00000096099 ⟸ ENSRNOT00000118579

Ensembl Acc Id:

ENSRNOP00000086738 ⟸ ENSRNOT00000100038

RefSeq Acc Id:	XP_063134987 ⟸ XM_063278917
- Peptide Label:	isoform X3
- UniProtKB:	F1LPE5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134986 ⟸ XM_063278916
- Peptide Label:	isoform X2
- UniProtKB:	P58365 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_063134984 ⟸ XM_063278914
- Peptide Label:	isoform X1
- UniProtKB:	F1LPE5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134988 ⟸ XM_063278918
- Peptide Label:	isoform X4
- UniProtKB:	F1LPE5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134985 ⟸ XM_063278915
- Peptide Label:	isoform X1
- UniProtKB:	F1LPE5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134989 ⟸ XM_063278919
- Peptide Label:	isoform X5
- UniProtKB:	A6K3X5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134990 ⟸ XM_063278920
- Peptide Label:	isoform X6
- UniProtKB:	A0A8I6A2T2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134991 ⟸ XM_063278921
- Peptide Label:	isoform X7
- UniProtKB:	A0A8I6A2T2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134993 ⟸ XM_063278923
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063134992 ⟸ XM_063278922
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063134996 ⟸ XM_063278926
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063134995 ⟸ XM_063278925
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063134997 ⟸ XM_063278927
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063134998 ⟸ XM_063278928
- Peptide Label:	isoform X13

Protein Domains

Cadherin

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:619760	AgrOrtholog
BioCyc Gene	G2FUF-3742	BioCyc
Ensembl Genes	ENSRNOG00000033087	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000118579	ENTREZGENE
Gene3D-CATH	Cadherins	UniProtKB/Swiss-Prot
InterPro	Cadherin-like_dom	UniProtKB/Swiss-Prot
	Cadherin-like_sf	UniProtKB/Swiss-Prot
	Cadherin_CS	UniProtKB/Swiss-Prot
KEGG Report	rno:114102	UniProtKB/Swiss-Prot
NCBI Gene	114102	ENTREZGENE
PANTHER	CADHERIN RELATED 23	UniProtKB/Swiss-Prot
	FAT ATYPICAL CADHERIN-RELATED	UniProtKB/Swiss-Prot
Pfam	Cadherin	UniProtKB/Swiss-Prot
PhenoGen	Cdh23	PhenoGen
PRINTS	CADHERIN	UniProtKB/Swiss-Prot
PROSITE	CADHERIN_1	UniProtKB/Swiss-Prot
	CADHERIN_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000033087	RatGTEx
SMART	SM00112	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF49313	UniProtKB/Swiss-Prot
UniProt	A0A8I6A2T2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AP55_RAT	UniProtKB/TrEMBL
	A6K3X5	ENTREZGENE, UniProtKB/TrEMBL
	CAD23_RAT	UniProtKB/Swiss-Prot
	F1LPE5	ENTREZGENE, UniProtKB/TrEMBL
	P58365	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Cdh23	cadherin-related 23	LOC103694885	cadherin-23-like	Data merged from RGD:9245380	737654	PROVISIONAL
2014-08-25	LOC103694885	cadherin-23-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2012-01-06	Cdh23	cadherin-related 23	Cdh23	cadherin 23 (otocadherin)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	Cdh23	cadherin 23 (otocadherin)		cadherin related 23	Name updated	1299863	APPROVED
2002-08-07	Cdh23	cadherin related 23			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	enriched in testis	633048

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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