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Gene: Grik1 (glutamate ionotropic receptor kainate type subunit 1) Rattus norvegicus

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Symbol:

Grik1

Name:

glutamate ionotropic receptor kainate type subunit 1

RGD ID:

2732

Description:

Enables several functions, including glutamate binding activity; ligand-gated monoatomic ion channel activity; and scaffold protein binding activity. Contributes to heterocyclic compound binding activity. Involved in ionotropic glutamate receptor signaling pathway; modulation of chemical synaptic transmission; and nervous system development. Located in dendrite; neuronal cell body; and terminal bouton. Part of ionotropic glutamate receptor complex. Is active in glutamatergic synapse and presynaptic membrane. Used to study status epilepticus. Human ortholog(s) of this gene implicated in childhood absence epilepsy. Orthologous to human GRIK1 (glutamate ionotropic receptor kainate type subunit 1); PARTICIPATES IN long term potentiation; glutamate signaling pathway; INTERACTS WITH (+)-pilocarpine; 17beta-estradiol; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

REVIEWED

Previously known as:

GluK1; GluR-5; GluR5; glutamate receptor 5; glutamate receptor ionotropic kainate 1; glutamate receptor ionotropic, kainate 1; glutamate receptor, ionotropic kainate 1; glutamate receptor, ionotropic, kainate 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GRIK1 (glutamate ionotropic receptor kainate type subunit 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Grik1 (glutamate receptor, ionotropic, kainate 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Grik1 (glutamate ionotropic receptor kainate type subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GRIK1 (glutamate ionotropic receptor kainate type subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	GRIK1 (glutamate ionotropic receptor kainate type subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Grik1 (glutamate ionotropic receptor kainate type subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GRIK1 (glutamate ionotropic receptor kainate type subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GRIK1 (glutamate ionotropic receptor kainate type subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Grik1 (glutamate ionotropic receptor kainate type subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Grik1 (glutamate ionotropic receptor kainate type subunit 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	GRIK1 (glutamate ionotropic receptor kainate type subunit 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Grik1 (glutamate receptor, ionotropic, kainate 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	grik1a (glutamate receptor, ionotropic, kainate 1a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	grik1a (glutamate receptor, ionotropic, kainate 1a)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Danio rerio (zebrafish):	grik1b (glutamate receptor, ionotropic, kainate 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	grik1b (glutamate receptor, ionotropic, kainate 1b)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11155	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	CG11155	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	glr-3	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|SonicParanoid)
Caenorhabditis elegans (roundworm):	glr-5	Alliance	DIOPT (Hieranoid\|OMA\|SonicParanoid)
Caenorhabditis elegans (roundworm):	glr-1	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	KaiR1D	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	KaiR1D	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ekar	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	clumsy	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	GluRIIB	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	GluRIIC	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	GluRIID	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	GluRIIE	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	grik1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	grik1	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	40,655,974 - 41,056,966 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	40,655,975 - 41,056,517 (-)	Ensembl				GRCr8
mRatBN7.2	11	27,169,739 - 27,571,131 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	27,169,740 - 27,570,645 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	35,873,718 - 36,274,020 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	28,573,961 - 28,974,261 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	27,741,791 - 28,141,806 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	27,811,954 - 28,213,940 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	27,811,957 - 27,971,359 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	31,426,627 - 31,828,737 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	27,703,874 - 28,106,450 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	26,906,345 - 27,304,585 (-)	NCBI		Celera
RGSC_v3.1	11	27,703,874 - 28,106,450 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

childhood absence epilepsy (ISO)

schizophrenia (ISO)

status epilepticus (IDA)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-pilocarpine (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-hydroxypropanoic acid (ISO)

6-propyl-2-thiouracil (EXP)

all-trans-retinoic acid (ISO)

amitriptyline (EXP)

ammonium chloride (EXP)

atrazine (EXP)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

benzoates (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

C60 fullerene (EXP)

cadmium atom (EXP)

cadmium dichloride (EXP)

celecoxib (ISO)

CGP 52608 (ISO)

cocaine (EXP)

DDE (EXP)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

disodium selenite (ISO)

epoxiconazole (EXP)

ethanol (EXP)

folic acid (ISO)

fulvestrant (ISO)

kainic acid (ISO)

lead diacetate (ISO)

linuron (EXP)

lithium atom (ISO)

lithium hydride (ISO)

methapyrilene (ISO)

methotrexate (ISO)

morphine (ISO)

N-ethyl-N-nitrosourea (EXP)

prochloraz (EXP)

procymidone (EXP)

rac-lactic acid (ISO)

Se-methyl-L-selenocysteine (ISO)

Se-methylselenocysteine (ISO)

topiramate (EXP,ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult behavior (ISO)

behavioral response to pain (ISO)

calcium-mediated signaling (IEA)

chemical synaptic transmission (TAS)

excitatory postsynaptic potential (ISO)

glutamate receptor signaling pathway (NAS)

inhibitory postsynaptic potential (ISO)

ionotropic glutamate receptor signaling pathway (IDA,IEA)

L-glutamate transmembrane transport (IEA)

membrane depolarization (ISO)

modulation of chemical synaptic transmission (IBA)

modulation of excitatory postsynaptic potential (IMP)

monoatomic ion transmembrane transport (IEA)

monoatomic ion transport (IEA)

negative regulation of synaptic transmission, GABAergic (IDA)

negative regulation of synaptic transmission, glutamatergic (IDA,IEA,ISO)

nervous system development (IMP)

positive regulation of gamma-aminobutyric acid secretion (ISO)

positive regulation of synaptic transmission, GABAergic (IDA,ISO)

regulation of membrane potential (IEA,ISO)

regulation of presynaptic membrane potential (IEA)

regulation of short-term neuronal synaptic plasticity (IDA)

regulation of synaptic plasticity (TAS)

synaptic transmission, glutamatergic (IBA,ISO)

Cellular Component

dendrite (IDA,IEA,ISO)

glutamatergic synapse (IDA,NAS)

ionotropic glutamate receptor complex (IDA)

kainate selective glutamate receptor complex (IBA,ISO)

membrane (IEA,ISO)

neuronal cell body (IDA)

plasma membrane (IBA,IEA,ISO)

postsynaptic density (ISO)

postsynaptic density membrane (IBA)

postsynaptic membrane (IEA,TAS)

presynaptic membrane (IBA,IDA,ISO)

receptor complex (IDA)

synapse (IEA,ISO)

terminal bouton (IDA,IEA)

Molecular Function

extracellularly glutamate-gated ion channel activity (IDA)

glutamate binding (IDA)

glutamate-gated calcium ion channel activity (IDA)

glutamate-gated receptor activity (IDA,IEA,ISO)

heterocyclic compound binding (IPI)

identical protein binding (IPI)

kainate selective glutamate receptor activity (IBA,IDA,ISO)

L-glutamate transmembrane transporter activity (ISO)

ligand-gated monoatomic ion channel activity (IEA)

ligand-gated monoatomic ion channel activity involved in regulation of presynaptic membrane potential (IDA,IMP,NAS)

monoatomic ion channel activity (IEA)

protein binding (IDA,IPI,ISO)

scaffold protein binding (IDA)

signaling receptor activity (IEA)

SNARE binding (IPI)

transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential (IBA)

Molecular Pathway Annotations Click to see Annotation Detail View

glutamate signaling pathway (IEA)

long term potentiation (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Cloning of a novel glutamate receptor subunit, GluR5: expression in the nervous system during development.	Bettler B, etal., Neuron 1990 Nov;5(5):583-95.
2.	Kainate receptors are involved in synaptic plasticity.	Bortolotto ZA, etal., Nature. 1999 Nov 18;402(6759):297-301.
3.	Bidirectional modulation of GABA release by presynaptic glutamate receptor 5 kainate receptors in the basolateral amygdala.	Braga MF, etal., J Neurosci. 2003 Jan 15;23(2):442-52.
4.	Contributions of different kainate receptor subunits to the properties of recombinant homomeric and heteromeric receptors.	Fisher MT and Fisher JL, Neuroscience. 2014 Oct 10;278:70-80. doi: 10.1016/j.neuroscience.2014.08.009. Epub 2014 Aug 17.
5.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
6.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
7.	Selective antagonism of GluR5 kainate-receptor-mediated synaptic currents by topiramate in rat basolateral amygdala neurons.	Gryder DS and Rogawski MA, J Neurosci 2003 Aug 6;23(18):7069-74.
8.	Activation of spinal kainate receptors after inflammation: behavioral hyperalgesia and subunit gene expression.	Guo W, etal., Eur J Pharmacol 2002 Oct 11;452(3):309-18.
9.	Rapid and differential regulation of AMPA and kainate receptors at hippocampal mossy fibre synapses by PICK1 and GRIP.	Hirbec H, etal., Neuron. 2003 Feb 20;37(4):625-38. doi: 10.1016/s0896-6273(02)01191-1.
10.	A role for Ca2+ stores in kainate receptor-dependent synaptic facilitation and LTP at mossy fiber synapses in the hippocampus.	Lauri SE, etal., Neuron. 2003 Jul 17;39(2):327-41. doi: 10.1016/s0896-6273(03)00369-6.
11.	Kainate receptors expressed by a subpopulation of developing nociceptors rapidly switch from high to low Ca2+ permeability.	Lee CJ, etal., J Neurosci. 2001 Jul 1;21(13):4572-81. doi: 10.1523/JNEUROSCI.21-13-04572.2001.
12.	High-affinity kainate and domoate receptors in rat brain.	Lomeli H, etal., FEBS Lett 1992 Jul 28;307(2):139-43.
13.	Ionotropic glutamate receptors are expressed in GABAergic terminals in the rat superficial dorsal horn.	Lu CR, etal., J Comp Neurol. 2005 May 30;486(2):169-78.
14.	Presynaptic low- and high-affinity kainate receptors in nociceptive spinal afferents.	Lucifora S, etal., Pain. 2006 Jan;120(1-2):97-105. Epub 2005 Dec 15.
15.	Crystal structures of the kainate receptor GluR5 ligand binding core dimer with novel GluR5-selective antagonists.	Mayer ML, etal., J Neurosci. 2006 Mar 15;26(11):2852-61.
16.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
17.	Differential distribution of ionotropic glutamate receptor subunits in the rat olfactory bulb.	Montague AA and Greer CA, J Comp Neurol. 1999 Mar 8;405(2):233-46. doi: 10.1002/(sici)1096-9861(19990308)405:2<233::aid-cne7>3.0.co;2-a.
18.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
19.	Online Mendelian Inheritance in Man, OMIM (TM).	Online Mendelian Inheritance in Man, OMIM (TM).
20.	GluR5 and GluR6 kainate receptor subunits coexist in hippocampal neurons and coassemble to form functional receptors.	Paternain AV, etal., J Neurosci. 2000 Jan 1;20(1):196-205.
21.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
22.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
23.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
24.	GluR5 kainate receptors, seizures, and the amygdala.	Rogawski MA, etal., Ann N Y Acad Sci. 2003 Apr;985:150-62.
25.	Glutamate receptor subunits GluR5 and KA-2 are coexpressed in rat trigeminal ganglion neurons.	Sahara Y, etal., J Neurosci. 1997 Sep 1;17(17):6611-20. doi: 10.1523/JNEUROSCI.17-17-06611.1997.
26.	Actinfilin is a Cul3 substrate adaptor, linking GluR6 kainate receptor subunits to the ubiquitin-proteasome pathway.	Salinas GD, etal., J Biol Chem. 2006 Dec 29;281(52):40164-73. Epub 2006 Oct 24.
27.	Effects of the kainate receptor agonist ATPA on glutamatergic synaptic transmission and plasticity during early postnatal development.	Sallert M, etal., Neuropharmacology. 2007 May;52(6):1354-65. Epub 2007 Feb 4.
28.	Allelic association of juvenile absence epilepsy with a GluR5 kainate receptor gene (GRIK1) polymorphism.	Sander T, etal., Am J Med Genet 1997 Jul 25;74(4):416-21.
29.	Structural and compositional diversity in the kainate receptor family.	Selvakumar P, etal., Cell Rep. 2021 Oct 26;37(4):109891. doi: 10.1016/j.celrep.2021.109891.
30.	Association study of polymorphisms in the GluR5 kainate receptor gene (GRIK1) with schizophrenia.	Shibata H, etal., Psychiatr Genet. 2001 Sep;11(3):139-44.
31.	A glutamate receptor channel with high affinity for domoate and kainate.	Sommer B, etal., EMBO J. 1992 Apr;11(4):1651-6. doi: 10.1002/j.1460-2075.1992.tb05211.x.
32.	Tentative Sequence Identification Numbers	Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
33.	Conformational restriction blocks glutamate receptor desensitization.	Weston MC, etal., Nat Struct Mol Biol. 2006 Dec;13(12):1120-7. Epub 2006 Nov 19.

Additional References at PubMed

PMID:8889548	PMID:9069287	PMID:9335499	PMID:10516295	PMID:11069933	PMID:11144357	PMID:11985817	PMID:12223554	PMID:14715943	PMID:14724198	PMID:15014126	PMID:15458844
PMID:15483117	PMID:15509753	PMID:15513934	PMID:15537878	PMID:15673679	PMID:15928066	PMID:17174564	PMID:17245443	PMID:17569736	PMID:18046310	PMID:18678878	PMID:19043593
PMID:19123252	PMID:20848775	PMID:21734292	PMID:22279215	PMID:24069373	PMID:28100490	PMID:30421168	PMID:30451858

Genomics

Comparative Map Data

Grik1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	40,655,974 - 41,056,966 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	40,655,975 - 41,056,517 (-)	Ensembl				GRCr8
mRatBN7.2	11	27,169,739 - 27,571,131 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	27,169,740 - 27,570,645 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	35,873,718 - 36,274,020 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	28,573,961 - 28,974,261 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	27,741,791 - 28,141,806 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	27,811,954 - 28,213,940 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	27,811,957 - 27,971,359 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	31,426,627 - 31,828,737 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	27,703,874 - 28,106,450 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	26,906,345 - 27,304,585 (-)	NCBI		Celera
RGSC_v3.1	11	27,703,874 - 28,106,450 (-)	NCBI
Cytogenetic Map	11	q11	NCBI

GRIK1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	29,536,933 - 29,939,996 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	29,536,933 - 29,940,033 (-)	Ensembl			hg38	GRCh38
GRCh37	21	30,909,254 - 31,312,314 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	29,831,125 - 30,234,153 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	29,831,126 - 30,234,153	NCBI
Celera	21	16,092,373 - 16,495,412 (-)	NCBI		Celera
Cytogenetic Map	21	q21.3	NCBI
HuRef	21	16,317,387 - 16,721,110 (-)	NCBI		HuRef
CHM1_1	21	30,470,770 - 30,873,809 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	27,902,775 - 28,305,893 (-)	NCBI		T2T-CHM13v2.0

Grik1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	87,692,789 - 88,087,751 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	87,692,788 - 88,087,153 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	87,895,901 - 88,290,863 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	87,895,900 - 88,290,265 (-)	Ensembl			mm10	GRCm38
MGSCv37	16	87,896,142 - 88,290,503 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	87,784,754 - 88,179,102 (-)	NCBI		MGSCv36	mm8
Celera	16	88,093,673 - 88,486,750 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	50.23	NCBI

Grik1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	28,899,899 - 29,308,470 (-)	Ensembl
ChiLan1.0	NW_004955407	28,899,643 - 29,308,936 (-)	NCBI	ChiLan1.0	ChiLan1.0

GRIK1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	25,727,337 - 26,107,844 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	20,585,887 - 20,966,442 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	15,976,931 - 16,357,578 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	29,363,972 - 29,743,940 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	29,364,269 - 29,743,379 (-)	Ensembl			panPan2	panpan1.1

GRIK1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	24,477,319 - 24,839,502 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	24,478,696 - 24,839,434 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	24,471,425 - 24,648,177 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	24,592,133 - 24,768,924 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	24,592,138 - 24,953,198 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	24,542,198 - 24,719,018 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	24,544,158 - 24,720,948 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	25,015,707 - 25,192,582 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Grik1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	24,931,282 - 25,310,559 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	12,157,765 - 12,536,224 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	12,157,215 - 12,536,555 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GRIK1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	192,877,606 - 193,294,952 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	192,877,707 - 193,296,954 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	203,411,219 - 203,897,606 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GRIK1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	62,286,828 - 62,692,061 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666071	4,856,919 - 5,276,564 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Grik1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	17,592,874 - 17,986,759 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	17,592,587 - 17,986,863 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Grik1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	55,563,597 - 55,946,907 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Grik1
3053 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	110
Count of miRNA genes:	67
Interacting mature miRNAs:	70
Transcripts:	ENSRNOT00000042581, ENSRNOT00000050073, ENSRNOT00000051060
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300147	Bp187	Blood pressure QTL 187	3.67		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	11	22524746	82951192	Rat
1598841	Memor7	Memory QTL 7			exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	11	33306008	78306008	Rat
1598842	Glom10	Glomerulus QTL 10	3.4		kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	11	3818154	48818154	Rat
1598811	Bp291	Blood pressure QTL 291	1.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	33306008	78306008	Rat
634339	Niddm50	Non-insulin dependent diabetes mellitus QTL 50	3.32		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	11	10806125	55806125	Rat
634341	Bw121	Body weight QTL 121	3.56		abdominal fat pad mass (VT:1000711)	abdominal fat pad weight (CMO:0000088)	11	35323199	55805892	Rat
8694376	Bw156	Body weight QTL 156	2.25	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
10755497	Bp388	Blood pressure QTL 388	2.76		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	11	32943067	89836615	Rat
724517	Uae18	Urinary albumin excretion QTL 18	3.7		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	11	29958996	57754989	Rat
2290451	Scl58	Serum cholesterol level QTL 58	3.48		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	11	26318031	55806125	Rat
1300130	Rf20	Renal function QTL 20	4.44		kidney glomerulus integrity trait (VT:0010546)	kidney glomerulus diameter (CMO:0001166)	11	31915469	76915469	Rat
10058952	Gmadr6	Adrenal mass QTL 6	2.29	0.0072	adrenal gland mass (VT:0010420)	both adrenal glands wet weight to body weight ratio (CMO:0002411)	11	36428416	81428416	Rat
1600394	Edcs1	Endometrial carcinoma susceptibility QTL1	2.9	0.04	uterus morphology trait (VT:0001120)	percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)	11	12823152	57823152	Rat
1558659	Tescar1	Testicular tumor resistance QTL 1	3.9		testis integrity trait (VT:0010572)	percentage of study population developing testis tumors during a period of time (CMO:0001261)	11	34618760	79618760	Rat
724563	Uae10	Urinary albumin excretion QTL 10	6		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	11	20193549	96351019	Rat
9589032	Epfw10	Epididymal fat weight QTL 10	9.29	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	11	36749459	81749459	Rat
9590313	Scort20	Serum corticosterone level QTL 20	6.51	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	11	36749459	81749459	Rat
8694424	Bw162	Body weight QTL 162	3.8	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	11	36749459	81749459	Rat
631510	Spl2	Serum phospholipid level QTL 2	4.1		blood phospholipid amount (VT:0006084)	serum phospholipid level (CMO:0001171)	11	27556685	72556685	Rat

Markers in Region

RH132302

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	27,169,788 - 27,169,979 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	27,812,004 - 27,812,194	NCBI	Rnor6.0
Rnor_5.0	11	31,426,677 - 31,426,867	UniSTS	Rnor5.0
RGSC_v3.4	11	27,703,924 - 27,704,114	UniSTS	RGSC3.4
Celera	11	26,906,395 - 26,906,585	UniSTS
RH 3.4 Map	11	137.5	UniSTS
Cytogenetic Map	11	q11	UniSTS

D10S224

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	27,188,185 - 27,189,584 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	27,830,716 - 27,832,114	NCBI	Rnor6.0
Rnor_5.0	11	31,445,389 - 31,446,787	UniSTS	Rnor5.0
RGSC_v3.4	11	27,722,321 - 27,723,719	UniSTS	RGSC3.4
Celera	11	26,924,740 - 26,926,138	UniSTS
Cytogenetic Map	11	q11	UniSTS

UniSTS:478959

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	11	27,413,001 - 27,413,216 (+)	MAPPER	mRatBN7.2
Rnor_6.0	11	28,056,384 - 28,056,598	NCBI	Rnor6.0
Rnor_5.0	11	31,671,205 - 31,671,419	UniSTS	Rnor5.0
RGSC_v3.4	11	27,948,442 - 27,948,656	UniSTS	RGSC3.4
Celera	11	27,149,365 - 27,149,579	UniSTS
Cytogenetic Map	8	q24	UniSTS
Cytogenetic Map	11	q11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
7	3	30	134	39	35	20	51	20	6	171	97	3	119	44	81	15	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001111114	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001111117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_017241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248053	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006248054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597946	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017597949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039088253	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063270451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005491017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AI145540	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000011	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M83560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	M83561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z11712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z11713	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Z11714	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042581 ⟹ ENSRNOP00000050263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	40,672,604 - 40,828,792 (-)	Ensembl
mRatBN7.2 Ensembl	11	27,169,742 - 27,570,645 (-)	Ensembl
Rnor_6.0 Ensembl	11	27,811,957 - 27,971,359 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000050073 ⟹ ENSRNOP00000045594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	40,655,977 - 41,056,517 (-)	Ensembl
mRatBN7.2 Ensembl	11	27,169,742 - 27,570,645 (-)	Ensembl
Rnor_6.0 Ensembl	11	27,812,235 - 27,971,359 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000051060 ⟹ ENSRNOP00000046164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	40,655,975 - 41,056,517 (-)	Ensembl
mRatBN7.2 Ensembl	11	27,169,740 - 27,570,645 (-)	Ensembl
Rnor_6.0 Ensembl	11	27,811,957 - 27,971,359 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081066 ⟹ ENSRNOP00000074448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	40,656,771 - 41,056,517 (-)	Ensembl
mRatBN7.2 Ensembl	11	27,170,536 - 27,570,645 (-)	Ensembl
Rnor_6.0 Ensembl	11	27,812,751 - 27,971,359 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085629 ⟹ ENSRNOP00000069424

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	40,655,977 - 40,814,595 (-)	Ensembl
mRatBN7.2 Ensembl	11	27,169,742 - 27,328,359 (-)	Ensembl
Rnor_6.0 Ensembl	11	27,811,957 - 27,971,359 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100916 ⟹ ENSRNOP00000078137

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	40,673,970 - 41,056,517 (-)	Ensembl
mRatBN7.2 Ensembl	11	27,187,235 - 27,570,645 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000147508 ⟹ ENSRNOP00000105903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	11	40,672,604 - 41,056,517 (-)	Ensembl

RefSeq Acc Id:

NM_001111114 ⟹ NP_001104584

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,655,974 - 41,056,503 (-)	NCBI
mRatBN7.2	11	27,169,739 - 27,570,273 (-)	NCBI
Rnor_6.0	11	27,811,954 - 28,213,539 (-)	NCBI
Rnor_5.0	11	31,426,627 - 31,828,737 (-)	NCBI
RGSC_v3.4	11	27,703,874 - 28,106,450 (-)	RGD
Celera	11	26,906,345 - 27,304,585 (-)	RGD

Sequence:

show sequence

CTAGGAAGCCCGCTTCACGTCCCCACGCTTGTTCCCTCCACCTCGCTCTCCTGAGAGCAGAGAG
CGCGCGGTGTGCAGACTCGGAGCATTCCGGGAGGATGAGGCGGGGACCCAGCCCAAGTTGGGTG
CATCTTGCGGGCGTGAGGCCACAACTGGGTTTCGGCATGAATTAAGAAGCTTGAAAGATGGAGC
GCAGCACAGTCCTTATCCAACCCGGGCTCTGGACCAGGGACACCAGCTGGACACTCCTCTATTT
CCTGTGCTACATCCTCCCTCAGACCTCCCCTCAAGTGCTCAGGATCGGAGGGATTTTTGAAACT
GTGGAAAATGAACCTGTTAATGTTGAAGAATTAGCTTTCAAGTTTGCAGTCACCAGTATTAACC
GAAACCGAACCTTGATGCCCAATACCACATTAACCTATGACATCCAGAGAATTAATCTTTTTGA
TAGTTTTGAAGCCTCCCGAAGAGCATGCGACCAGCTGGCTCTCGGGGTGGCCGCACTCTTCGGC
CCTTCCCACAGCTCCTCCGTCAGTGCTGTACAGTCTATTTGCAATGCTCTGGAAGTTCCACACA
TTCAGACTCGCTGGAAACACCCTTCCGTGGACAGCAGAGACCTATTTTATATCAACCTCTACCC
GGACTATGCGGCTATCAGCAGGGCGGTCCTGGATTTGGTCCTCTATTACAACTGGAAAACAGTG
ACGGTGGTGTATGAAGACAGCACAGGTCTAATTCGTCTGCAAGAGCTCATCAAAGCTCCCTCCA
GATACAACATTAAAATCAAAATCCGCCAGCTTCCCCCTGCGAATAAAGACGCCAAACCTCTGCT
CAAGGAGATGAAGAAAAGCAAAGAGTTCTATGTGATATTTGATTGTTCGCACGAAACAGCTGCG
GAAATTCTTAAGCAGATTTTGTTCATGGGCATGATGACTGAATATTATCACTACTTCTTCACAA
CCCTGGACTTGTTTGCTTTAGATCTGGAACTCTATAGGTACAGCGGTGTAAATATGACTGGATT
TCGGTTGCTGAATATTGACAACCCTCACGTGTCATCCATCATTGAGAAGTGGTCCATGGAGAGG
TTGCAGGCCCCGCCCAGACCCGAGACTGGTCTTCTGGATGGCATGATGACAACTGAAGCAGCGC
TGATGTACGATGCTGTGTACATGGTAGCCATTGCGTCCCACCGTGCCTCTCAGCTGACCGTCAG
CTCCCTGCAGTGCCATCGACATAAGCCATGGCGCCTTGGACCCAGATTTATGAACCTCATCAAA
GAGGCTCGGTGGGACGGCTTGACTGGGCGGATCACCTTCAATAAGACCGATGGCTTGAGAAAGG
ATTTTGACCTGGACATTATCAGTCTCAAAGAGGAAGGAACTGAAAAGATTGGGATTTGGAACTC
CAACAGTGGGCTGAACATGACGGATGGCAACAGAGACAGGTCCAACAATATCACGGACTCGCTG
GCTAACCGCACACTCATTGTCACCACTATTCTGGAAGAGCCCTACGTGATGTACAGGAAATCCG
ATAAGCCCTTGTATGGAAACGACAGGTTTGAAGGATATTGCCTGGATCTGCTGAAAGAACTGTC
CAATATCCTGGGTTTTCTTTACGATGTTAAACTGGTTCCTGATGGCAAATATGGAGCACAGAAT
GACAAAGGGGAATGGAATGGGATGGTAAAAGAACTCATCGACCACAGAGCTGACCTGGCAGTGG
CCCCTCTCACCATCACATACGTACGGGAGAAAGTCATTGACTTCTCCAAGCCCTTCATGACCCT
GGGCATTAGCATCCTTTACCGGAAGCCCAATGGAACCAACCCGGGTGTCTTCTCCTTCCTCAAC
CCCCTATCTCCGGACATTTGGATGTACGTGCTGCTCGCCTGCCTAGGAGTCAGTTGTGTACTGT
TTGTGATTGCGAGGTTCACACCCTACGAGTGGTATAACCCCCACCCATGCAACCCCGACTCAGA
CGTGGTGGAAAACAATTTCACTTTGCTAAATAGTTTCTGGTTTGGAGTTGGAGCTCTCATGCAG
CAAGGATCAGAGCTGATGCCCAAGGCTCTATCGACCAGAATAGTTGGAGGAATATGGTGGTTTT
TCACCCTAATCATCATTTCATCCTACACGGCCAACCTGGCTGCCTTCTTGACGGTAGAAAGAAT
GGAATCCCCCATCGATTCCGCAGACGATCTGGCCAAACAAACCAAGATAGAATATGGGGCAGTC
AGAGATGGCTCGACGATGACCTTCTTCAAGAAATCAAAGATCTCCACCTATGAGAAAATGTGGG
CTTTCATGAGCAGTAGACAGCAGAGCGCACTGGTTAAAAACAGTGACGAGGGGATCCAAAGGGT
GCTCACCACCGACTACGCACTGCTGATGGAGTCCACCAGCATTGAGTATGTGACGCAGAGGAAC
TGCAACCTCACTCAGATCGGGGGCCTCATAGACTCCAAAGGCTATGGAGTGGGGACGCCTATCG
GCTCCCCTTACCGGGATAAAATTACGATTGCCATTCTTCAACTGCAAGAAGAAGGGAAGCTTCA
TATGATGAAAGAGAAGTGGTGGAGGGGGAATGGCTGCCCTGAAGAAGACAGTAAGGAAGCCAGT
GCTCTGGGAGTGGAAAATATCGGCGGCATCTTCATTGTTCTGGCTGCAGGACTCGTGCTTTCTG
TGTTTGTAGCCATTGGAGAATTTTTATACAAATCACGGAAGAACAATGACGTTGAGCAGTGTCT
CTCTTTCAATGCCATCATGGAAGAGCTGGGAATATCCCTCAAGAATCAGAAAAAATTAAAGAAA
AAGTCAAGAACTAAGGGCAAATCTTCTTTCACAAGTATCCTTACTTGTCACCAGAGACGAACTC
AGAGAAAAGAGACAGTGGCGTGATCAAAGAACACACCTGTAAGAAGAAAAAGCCCACACGTCCG
CTGCACATATTTGGAGGACAGATTTCAGAGGACTATGTCTTTATCCATAACCCCAGTCGTGGAC
AGAGGGGGAAGAAATGCACAATTTTTAAAGCTCACATAGATATTACTTGAGAAGTGAAACTGAT
TCTTTTCAGATGAATTTGTATGCACACTTATTTTGAATTTTTCCATTTCCTCCGATAAATTGCT
ATGTGTGCTTTCTAAATAATAATAAACAAGCGGACTTTGTTTTTCATAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001111117 ⟹ NP_001104587

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,655,974 - 41,056,503 (-)	NCBI
mRatBN7.2	11	27,169,739 - 27,570,273 (-)	NCBI
Rnor_6.0	11	27,811,954 - 28,213,539 (-)	NCBI
Rnor_5.0	11	31,426,627 - 31,828,737 (-)	NCBI
RGSC_v3.4	11	27,703,874 - 28,106,450 (-)	RGD
Celera	11	26,906,345 - 27,304,585 (-)	RGD

Sequence:

show sequence

CTAGGAAGCCCGCTTCACGTCCCCACGCTTGTTCCCTCCACCTCGCTCTCCTGAGAGCAGAGAG
CGCGCGGTGTGCAGACTCGGAGCATTCCGGGAGGATGAGGCGGGGACCCAGCCCAAGTTGGGTG
CATCTTGCGGGCGTGAGGCCACAACTGGGTTTCGGCATGAATTAAGAAGCTTGAAAGATGGAGC
GCAGCACAGTCCTTATCCAACCCGGGCTCTGGACCAGGGACACCAGCTGGACACTCCTCTATTT
CCTGTGCTACATCCTCCCTCAGACCTCCCCTCAAGTGCTCAGGATCGGAGGGATTTTTGAAACT
GTGGAAAATGAACCTGTTAATGTTGAAGAATTAGCTTTCAAGTTTGCAGTCACCAGTATTAACC
GAAACCGAACCTTGATGCCCAATACCACATTAACCTATGACATCCAGAGAATTAATCTTTTTGA
TAGTTTTGAAGCCTCCCGAAGAGCATGCGACCAGCTGGCTCTCGGGGTGGCCGCACTCTTCGGC
CCTTCCCACAGCTCCTCCGTCAGTGCTGTACAGTCTATTTGCAATGCTCTGGAAGTTCCACACA
TTCAGACTCGCTGGAAACACCCTTCCGTGGACAGCAGAGACCTATTTTATATCAACCTCTACCC
GGACTATGCGGCTATCAGCAGGGCGGTCCTGGATTTGGTCCTCTATTACAACTGGAAAACAGTG
ACGGTGGTGTATGAAGACAGCACAGGTCTAATTCGTCTGCAAGAGCTCATCAAAGCTCCCTCCA
GATACAACATTAAAATCAAAATCCGCCAGCTTCCCCCTGCGAATAAAGACGCCAAACCTCTGCT
CAAGGAGATGAAGAAAAGCAAAGAGTTCTATGTGATATTTGATTGTTCGCACGAAACAGCTGCG
GAAATTCTTAAGCAGATTTTGTTCATGGGCATGATGACTGAATATTATCACTACTTCTTCACAA
CCCTGGACTTGTTTGCTTTAGATCTGGAACTCTATAGGTACAGCGGTGTAAATATGACTGGATT
TCGGTTGCTGAATATTGACAACCCTCACGTGTCATCCATCATTGAGAAGTGGTCCATGGAGAGG
TTGCAGGCCCCGCCCAGACCCGAGACTGGTCTTCTGGATGGCATGATGACAACTGAAGCAGCGC
TGATGTACGATGCTGTGTACATGGTAGCCATTGCGTCCCACCGTGCCTCTCAGCTGACCGTCAG
CTCCCTGCAGTGCCATCGACATAAGCCATGGCGCCTTGGACCCAGATTTATGAACCTCATCAAA
GAGGCTCGGTGGGACGGCTTGACTGGGCGGATCACCTTCAATAAGACCGATGGCTTGAGAAAGG
ATTTTGACCTGGACATTATCAGTCTCAAAGAGGAAGGAACTGAAAAGGCCTCTGGTGAAGTGTC
TAAACACTTGTATAAAGTGTGGAAGAAGATTGGGATTTGGAACTCCAACAGTGGGCTGAACATG
ACGGATGGCAACAGAGACAGGTCCAACAATATCACGGACTCGCTGGCTAACCGCACACTCATTG
TCACCACTATTCTGGAAGAGCCCTACGTGATGTACAGGAAATCCGATAAGCCCTTGTATGGAAA
CGACAGGTTTGAAGGATATTGCCTGGATCTGCTGAAAGAACTGTCCAATATCCTGGGTTTTCTT
TACGATGTTAAACTGGTTCCTGATGGCAAATATGGAGCACAGAATGACAAAGGGGAATGGAATG
GGATGGTAAAAGAACTCATCGACCACAGAGCTGACCTGGCAGTGGCCCCTCTCACCATCACATA
CGTACGGGAGAAAGTCATTGACTTCTCCAAGCCCTTCATGACCCTGGGCATTAGCATCCTTTAC
CGGAAGCCCAATGGAACCAACCCGGGTGTCTTCTCCTTCCTCAACCCCCTATCTCCGGACATTT
GGATGTACGTGCTGCTCGCCTGCCTAGGAGTCAGTTGTGTACTGTTTGTGATTGCGAGGTTCAC
ACCCTACGAGTGGTATAACCCCCACCCATGCAACCCCGACTCAGACGTGGTGGAAAACAATTTC
ACTTTGCTAAATAGTTTCTGGTTTGGAGTTGGAGCTCTCATGCAGCAAGGATCAGAGCTGATGC
CCAAGGCTCTATCGACCAGAATAGTTGGAGGAATATGGTGGTTTTTCACCCTAATCATCATTTC
ATCCTACACGGCCAACCTGGCTGCCTTCTTGACGGTAGAAAGAATGGAATCCCCCATCGATTCC
GCAGACGATCTGGCCAAACAAACCAAGATAGAATATGGGGCAGTCAGAGATGGCTCGACGATGA
CCTTCTTCAAGAAATCAAAGATCTCCACCTATGAGAAAATGTGGGCTTTCATGAGCAGTAGACA
GCAGAGCGCACTGGTTAAAAACAGTGACGAGGGGATCCAAAGGGTGCTCACCACCGACTACGCA
CTGCTGATGGAGTCCACCAGCATTGAGTATGTGACGCAGAGGAACTGCAACCTCACTCAGATCG
GGGGCCTCATAGACTCCAAAGGCTATGGAGTGGGGACGCCTATCGGCTCCCCTTACCGGGATAA
AATTACGATTGCCATTCTTCAACTGCAAGAAGAAGGGAAGCTTCATATGATGAAAGAGAAGTGG
TGGAGGGGGAATGGCTGCCCTGAAGAAGACAGTAAGGAAGCCAGTGCTCTGGGAGTGGAAAATA
TCGGCGGCATCTTCATTGTTCTGGCTGCAGGACTCGTGCTTTCTGTGTTTGTAGCCATTGGAGA
ATTTTTATACAAATCACGGAAGAACAATGACGTTGAGCAGAAAGGAAAGTCATCAAGACTTAGA
TTTTATTTTAGGAACAAAGTAAGGTTTCATGGGAGCAAAAAAGAGAGCCTTGGTGTAGAGAAGT
GTCTCTCTTTCAATGCCATCATGGAAGAGCTGGGAATATCCCTCAAGAATCAGAAAAAATTAAA
GAAAAAGTCAAGAACTAAGGGCAAATCTTCTTTCACAAGTATCCTTACTTGTCACCAGAGACGA
ACTCAGAGAAAAGAGACAGTGGCGTGATCAAAGAACACACCTGTAAGAAGAAAAAGCCCACACG
TCCGCTGCACATATTTGGAGGACAGATTTCAGAGGACTATGTCTTTATCCATAACCCCAGTCGT
GGACAGAGGGGGAAGAAATGCACAATTTTTAAAGCTCACATAGATATTACTTGAGAAGTGAAAC
TGATTCTTTTCAGATGAATTTGTATGCACACTTATTTTGAATTTTTCCATTTCCTCCGATAAAT
TGCTATGTGTGCTTTCTAAATAATAATAAACAAGCGGACTTTGTTTTTCATAAAAAAAAAAAAA
AAA

hide sequence

RefSeq Acc Id:

NM_017241 ⟹ NP_058937

RefSeq Status:

REVIEWED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,655,974 - 41,056,503 (-)	NCBI
mRatBN7.2	11	27,169,739 - 27,570,273 (-)	NCBI
Rnor_6.0	11	27,811,954 - 28,213,539 (-)	NCBI
Rnor_5.0	11	31,426,627 - 31,828,737 (-)	NCBI
RGSC_v3.4	11	27,703,874 - 28,106,450 (-)	RGD
Celera	11	26,906,345 - 27,304,585 (-)	RGD

Sequence:

show sequence

CTAGGAAGCCCGCTTCACGTCCCCACGCTTGTTCCCTCCACCTCGCTCTCCTGAGAGCAGAGAG
CGCGCGGTGTGCAGACTCGGAGCATTCCGGGAGGATGAGGCGGGGACCCAGCCCAAGTTGGGTG
CATCTTGCGGGCGTGAGGCCACAACTGGGTTTCGGCATGAATTAAGAAGCTTGAAAGATGGAGC
GCAGCACAGTCCTTATCCAACCCGGGCTCTGGACCAGGGACACCAGCTGGACACTCCTCTATTT
CCTGTGCTACATCCTCCCTCAGACCTCCCCTCAAGTGCTCAGGATCGGAGGGATTTTTGAAACT
GTGGAAAATGAACCTGTTAATGTTGAAGAATTAGCTTTCAAGTTTGCAGTCACCAGTATTAACC
GAAACCGAACCTTGATGCCCAATACCACATTAACCTATGACATCCAGAGAATTAATCTTTTTGA
TAGTTTTGAAGCCTCCCGAAGAGCATGCGACCAGCTGGCTCTCGGGGTGGCCGCACTCTTCGGC
CCTTCCCACAGCTCCTCCGTCAGTGCTGTACAGTCTATTTGCAATGCTCTGGAAGTTCCACACA
TTCAGACTCGCTGGAAACACCCTTCCGTGGACAGCAGAGACCTATTTTATATCAACCTCTACCC
GGACTATGCGGCTATCAGCAGGGCGGTCCTGGATTTGGTCCTCTATTACAACTGGAAAACAGTG
ACGGTGGTGTATGAAGACAGCACAGGTCTAATTCGTCTGCAAGAGCTCATCAAAGCTCCCTCCA
GATACAACATTAAAATCAAAATCCGCCAGCTTCCCCCTGCGAATAAAGACGCCAAACCTCTGCT
CAAGGAGATGAAGAAAAGCAAAGAGTTCTATGTGATATTTGATTGTTCGCACGAAACAGCTGCG
GAAATTCTTAAGCAGATTTTGTTCATGGGCATGATGACTGAATATTATCACTACTTCTTCACAA
CCCTGGACTTGTTTGCTTTAGATCTGGAACTCTATAGGTACAGCGGTGTAAATATGACTGGATT
TCGGTTGCTGAATATTGACAACCCTCACGTGTCATCCATCATTGAGAAGTGGTCCATGGAGAGG
TTGCAGGCCCCGCCCAGACCCGAGACTGGTCTTCTGGATGGCATGATGACAACTGAAGCAGCGC
TGATGTACGATGCTGTGTACATGGTAGCCATTGCGTCCCACCGTGCCTCTCAGCTGACCGTCAG
CTCCCTGCAGTGCCATCGACATAAGCCATGGCGCCTTGGACCCAGATTTATGAACCTCATCAAA
GAGGCTCGGTGGGACGGCTTGACTGGGCGGATCACCTTCAATAAGACCGATGGCTTGAGAAAGG
ATTTTGACCTGGACATTATCAGTCTCAAAGAGGAAGGAACTGAAAAGGCCTCTGGTGAAGTGTC
TAAACACTTGTATAAAGTGTGGAAGAAGATTGGGATTTGGAACTCCAACAGTGGGCTGAACATG
ACGGATGGCAACAGAGACAGGTCCAACAATATCACGGACTCGCTGGCTAACCGCACACTCATTG
TCACCACTATTCTGGAAGAGCCCTACGTGATGTACAGGAAATCCGATAAGCCCTTGTATGGAAA
CGACAGGTTTGAAGGATATTGCCTGGATCTGCTGAAAGAACTGTCCAATATCCTGGGTTTTCTT
TACGATGTTAAACTGGTTCCTGATGGCAAATATGGAGCACAGAATGACAAAGGGGAATGGAATG
GGATGGTAAAAGAACTCATCGACCACAGAGCTGACCTGGCAGTGGCCCCTCTCACCATCACATA
CGTACGGGAGAAAGTCATTGACTTCTCCAAGCCCTTCATGACCCTGGGCATTAGCATCCTTTAC
CGGAAGCCCAATGGAACCAACCCGGGTGTCTTCTCCTTCCTCAACCCCCTATCTCCGGACATTT
GGATGTACGTGCTGCTCGCCTGCCTAGGAGTCAGTTGTGTACTGTTTGTGATTGCGAGGTTCAC
ACCCTACGAGTGGTATAACCCCCACCCATGCAACCCCGACTCAGACGTGGTGGAAAACAATTTC
ACTTTGCTAAATAGTTTCTGGTTTGGAGTTGGAGCTCTCATGCAGCAAGGATCAGAGCTGATGC
CCAAGGCTCTATCGACCAGAATAGTTGGAGGAATATGGTGGTTTTTCACCCTAATCATCATTTC
ATCCTACACGGCCAACCTGGCTGCCTTCTTGACGGTAGAAAGAATGGAATCCCCCATCGATTCC
GCAGACGATCTGGCCAAACAAACCAAGATAGAATATGGGGCAGTCAGAGATGGCTCGACGATGA
CCTTCTTCAAGAAATCAAAGATCTCCACCTATGAGAAAATGTGGGCTTTCATGAGCAGTAGACA
GCAGAGCGCACTGGTTAAAAACAGTGACGAGGGGATCCAAAGGGTGCTCACCACCGACTACGCA
CTGCTGATGGAGTCCACCAGCATTGAGTATGTGACGCAGAGGAACTGCAACCTCACTCAGATCG
GGGGCCTCATAGACTCCAAAGGCTATGGAGTGGGGACGCCTATCGGCTCCCCTTACCGGGATAA
AATTACGATTGCCATTCTTCAACTGCAAGAAGAAGGGAAGCTTCATATGATGAAAGAGAAGTGG
TGGAGGGGGAATGGCTGCCCTGAAGAAGACAGTAAGGAAGCCAGTGCTCTGGGAGTGGAAAATA
TCGGCGGCATCTTCATTGTTCTGGCTGCAGGACTCGTGCTTTCTGTGTTTGTAGCCATTGGAGA
ATTTTTATACAAATCACGGAAGAACAATGACGTTGAGCAGTGTCTCTCTTTCAATGCCATCATG
GAAGAGCTGGGAATATCCCTCAAGAATCAGAAAAAATTAAAGAAAAAGTCAAGAACTAAGGGCA
AATCTTCTTTCACAAGTATCCTTACTTGTCACCAGAGACGAACTCAGAGAAAAGAGACAGTGGC
GTGATCAAAGAACACACCTGTAAGAAGAAAAAGCCCACACGTCCGCTGCACATATTTGGAGGAC
AGATTTCAGAGGACTATGTCTTTATCCATAACCCCAGTCGTGGACAGAGGGGGAAGAAATGCAC
AATTTTTAAAGCTCACATAGATATTACTTGAGAAGTGAAACTGATTCTTTTCAGATGAATTTGT
ATGCACACTTATTTTGAATTTTTCCATTTCCTCCGATAAATTGCTATGTGTGCTTTCTAAATAA
TAATAAACAAGCGGACTTTGTTTTTCATAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006248053 ⟹ XP_006248115

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,655,974 - 41,056,966 (-)	NCBI
mRatBN7.2	11	27,170,020 - 27,570,088 (-)	NCBI
Rnor_6.0	11	27,811,954 - 28,213,940 (-)	NCBI
Rnor_5.0	11	31,426,627 - 31,828,737 (-)	NCBI

Sequence:

show sequence

AAGGGTGGGGCCAAAAGGGGAGGAGGGAAAGCAGGACTGAGAAACAAGCAAAAGCCGGGGTTCT
ATCACAGTAAACCTGCTGGAGCTCATCCTGCCTGGTCTGAGCGCTGCACCAATTCACCCAGTTC
CCTGTCTCCTTGGGTGTCATCTTCCCCCTTTTTCTCTCTTCCTCACTGCACCCTGAACCCTCTC
CCCACTCCCCCACCCATCACTTCTGCATCTGACCAGAGGACGAATGAGTGAGACGTTACAGCAA
ACCGAGGTAGCAACTTTCCTCAGCTGGTCTCTGGGCTCCAGGAGCAGAATCCTGCCGATTCTTG
GAGGTATGCAGCCCATGGAGGAGGAGGAGGACGAGCAGTGATGGGCTAACGACCGGTGCAAGAA
GCCCCAAGCAGCTCGCTCTAGGAAGCCCGCTTCACGTCCCCACGCTTGTTCCCTCCACCTCGCT
CTCCTGAGAGCAGAGAGCGCGCGGTGTGCAGACTCGGAGCATTCCGGGAGGATGAGGCGGGGAC
CCAGCCCAAGTTGGGTGCATCTTGCGGGCGTGAGGCCACAACTGGGTTTCGGCATGAATTAAGA
AGCTTGAAAGATGGAGCGCAGCACAGTCCTTATCCAACCCGGGCTCTGGACCAGGGACACCAGC
TGGACACTCCTCTATTTCCTGTGCTACATCCTCCCTCAGACCTCCCCTCAAGTGCTCAGGATCG
GAGGGATTTTTGAAACTGTGGAAAATGAACCTGTTAATGTTGAAGAATTAGCTTTCAAGTTTGC
AGTCACCAGTATTAACCGAAACCGAACCTTGATGCCCAATACCACATTAACCTATGACATCCAG
AGAATTAATCTTTTTGATAGTTTTGAAGCCTCCCGAAGAGCATGCGACCAGCTGGCTCTCGGGG
TGGCCGCACTCTTCGGCCCTTCCCACAGCTCCTCCGTCAGTGCTGTACAGTCTATTTGCAATGC
TCTGGAAGTTCCACACATTCAGACTCGCTGGAAACACCCTTCCGTGGACAGCAGAGACCTATTT
TATATCAACCTCTACCCGGACTATGCGGCTATCAGCAGGGCGGTCCTGGATTTGGTCCTCTATT
ACAACTGGAAAACAGTGACGGTGGTGTATGAAGACAGCACAGGTCTAATTCGTCTGCAAGAGCT
CATCAAAGCTCCCTCCAGATACAACATTAAAATCAAAATCCGCCAGCTTCCCCCTGCGAATAAA
GACGCCAAACCTCTGCTCAAGGAGATGAAGAAAAGCAAAGAGTTCTATGTGATATTTGATTGTT
CGCACGAAACAGCTGCGGAAATTCTTAAGCAGATTTTGTTCATGGGCATGATGACTGAATATTA
TCACTACTTCTTCACAACCCTGGACTTGTTTGCTTTAGATCTGGAACTCTATAGGTACAGCGGT
GTAAATATGACTGGATTTCGGTTGCTGAATATTGACAACCCTCACGTGTCATCCATCATTGAGA
AGTGGTCCATGGAGAGGTTGCAGGCCCCGCCCAGACCCGAGACTGGTCTTCTGGATGGCATGAT
GACAACTGAAGCAGCGCTGATGTACGATGCTGTGTACATGGTAGCCATTGCGTCCCACCGTGCC
TCTCAGCTGACCGTCAGCTCCCTGCAGTGCCATCGACATAAGCCATGGCGCCTTGGACCCAGAT
TTATGAACCTCATCAAAGAGGCTCGGTGGGACGGCTTGACTGGGCGGATCACCTTCAATAAGAC
CGATGGCTTGAGAAAGGATTTTGACCTGGACATTATCAGTCTCAAAGAGGAAGGAACTGAAAAG
ATTGGGATTTGGAACTCCAACAGTGGGCTGAACATGACGGATGGCAACAGAGACAGGTCCAACA
ATATCACGGACTCGCTGGCTAACCGCACACTCATTGTCACCACTATTCTGGAAGAGCCCTACGT
GATGTACAGGAAATCCGATAAGCCCTTGTATGGAAACGACAGGTTTGAAGGATATTGCCTGGAT
CTGCTGAAAGAACTGTCCAATATCCTGGGTTTTCTTTACGATGTTAAACTGGTTCCTGATGGCA
AATATGGAGCACAGAATGACAAAGGGGAATGGAATGGGATGGTAAAAGAACTCATCGACCACAG
AGCTGACCTGGCAGTGGCCCCTCTCACCATCACATACGTACGGGAGAAAGTCATTGACTTCTCC
AAGCCCTTCATGACCCTGGGCATTAGCATCCTTTACCGGAAGCCCAATGGAACCAACCCGGGTG
TCTTCTCCTTCCTCAACCCCCTATCTCCGGACATTTGGATGTACGTGCTGCTCGCCTGCCTAGG
AGTCAGTTGTGTACTGTTTGTGATTGCGAGGTTCACACCCTACGAGTGGTATAACCCCCACCCA
TGCAACCCCGACTCAGACGTGGTGGAAAACAATTTCACTTTGCTAAATAGTTTCTGGTTTGGAG
TTGGAGCTCTCATGCAGCAAGGATCAGAGCTGATGCCCAAGGCTCTATCGACCAGAATAGTTGG
AGGAATATGGTGGTTTTTCACCCTAATCATCATTTCATCCTACACGGCCAACCTGGCTGCCTTC
TTGACGGTAGAAAGAATGGAATCCCCCATCGATTCCGCAGACGATCTGGCCAAACAAACCAAGA
TAGAATATGGGGCAGTCAGAGATGGCTCGACGATGACCTTCTTCAAGAAATCAAAGATCTCCAC
CTATGAGAAAATGTGGGCTTTCATGAGCAGTAGACAGCAGAGCGCACTGGTTAAAAACAGTGAC
GAGGGGATCCAAAGGGTGCTCACCACCGACTACGCACTGCTGATGGAGTCCACCAGCATTGAGT
ATGTGACGCAGAGGAACTGCAACCTCACTCAGATCGGGGGCCTCATAGACTCCAAAGGCTATGG
AGTGGGGACGCCTATCGGCTCCCCTTACCGGGATAAAATTACGATTGCCATTCTTCAACTGCAA
GAAGAAGGGAAGCTTCATATGATGAAAGAGAAGTGGTGGAGGGGGAATGGCTGCCCTGAAGAAG
ACAGTAAGGAAGCCAGTGCTCTGGGAGTGGAAAATATCGGCGGCATCTTCATTGTTCTGGCTGC
AGGACTCGTGCTTTCTGTGTTTGTAGCCATTGGAGAATTTTTATACAAATCACGGAAGAACAAT
GACGTTGAGCAGAAAGGAAAGTCATCAAGACTTAGATTTTATTTTAGGAACAAAGTAAGGTTTC
ATGGGAGCAAAAAAGAGAGCCTTGGTGTAGAGAAGTGTCTCTCTTTCAATGCCATCATGGAAGA
GCTGGGAATATCCCTCAAGAATCAGAAAAAATTAAAGAAAAAGTCAAGAACTAAGGGCAAATCT
TCTTTCACAAGTATCCTTACTTGTCACCAGAGACGAACTCAGAGAAAAGAGACAGTGGCGTGAT
CAAAGAACACACCTGTAAGAAGAAAAAGCCCACACGTCCGCTGCACATATTTGGAGGACAGATT
TCAGAGGACTATGTCTTTATCCATAACCCCAGTCGTGGACAGAGGGGGAAGAAATGCACAATTT
TTAAAGCTCACATAGATATTACTTGAGAAGTGAAACTGATTCTTTTCAGATGAATTTGTATGCA
CACTTATTTTGAATTTTTCCATTTCCTCCGATAAATTGCTATGTGTGCTTTCTAAATAATAATA
AACAAGCGGACTTTGTTTTTCATA

hide sequence

RefSeq Acc Id:

XM_006248054 ⟹ XP_006248116

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,666,740 - 41,056,966 (-)	NCBI
mRatBN7.2	11	27,187,281 - 27,570,119 (-)	NCBI
Rnor_6.0	11	27,828,400 - 28,213,940 (-)	NCBI
Rnor_5.0	11	31,426,627 - 31,828,737 (-)	NCBI

Sequence:

show sequence

AAGGGTGGGGCCAAAAGGGGAGGAGGGAAAGCAGGACTGAGAAACAAGCAAAAGCCGGGGTTCT
ATCACAGTAAACCTGCTGGAGCTCATCCTGCCTGGTCTGAGCGCTGCACCAATTCACCCAGTTC
CCTGTCTCCTTGGGTGTCATCTTCCCCCTTTTTCTCTCTTCCTCACTGCACCCTGAACCCTCTC
CCCACTCCCCCACCCATCACTTCTGCATCTGACCAGAGGACGAATGAGTGAGACGTTACAGCAA
ACCGAGGTAGCAACTTTCCTCAGCTGGTCTCTGGGCTCCAGGAGCAGAATCCTGCCGATTCTTG
GAGGTATGCAGCCCATGGAGGAGGAGGAGGACGAGCAGTGATGGGCTAACGACCGGTGCAAGAA
GCCCCAAGCAGCTCGCTCTAGGAAGCCCGCTTCACGTCCCCACGCTTGTTCCCTCCACCTCGCT
CTCCTGAGAGCAGAGAGCGCGCGGTGTGCAGACTCGGAGCATTCCGGGAGGATGAGGCGGGGAC
CCAGCCCAAGTTGGGTGCATCTTGCGGGCGTGAGGCCACAACTGGGTTTCGGCATGAATTAAGA
AGCTTGAAAGATGGAGCGCAGCACAGTCCTTATCCAACCCGGGCTCTGGACCAGGGACACCAGC
TGGACACTCCTCTATTTCCTGTGCTACATCCTCCCTCAGACCTCCCCTCAAGTGCTCAGGATCG
GAGGGATTTTTGAAACTGTGGAAAATGAACCTGTTAATGTTGAAGAATTAGCTTTCAAGTTTGC
AGTCACCAGTATTAACCGAAACCGAACCTTGATGCCCAATACCACATTAACCTATGACATCCAG
AGAATTAATCTTTTTGATAGTTTTGAAGCCTCCCGAAGAGCATGCGACCAGCTGGCTCTCGGGG
TGGCCGCACTCTTCGGCCCTTCCCACAGCTCCTCCGTCAGTGCTGTACAGTCTATTTGCAATGC
TCTGGAAGTTCCACACATTCAGACTCGCTGGAAACACCCTTCCGTGGACAGCAGAGACCTATTT
TATATCAACCTCTACCCGGACTATGCGGCTATCAGCAGGGCGGTCCTGGATTTGGTCCTCTATT
ACAACTGGAAAACAGTGACGGTGGTGTATGAAGACAGCACAGGTCTAATTCGTCTGCAAGAGCT
CATCAAAGCTCCCTCCAGATACAACATTAAAATCAAAATCCGCCAGCTTCCCCCTGCGAATAAA
GACGCCAAACCTCTGCTCAAGGAGATGAAGAAAAGCAAAGAGTTCTATGTGATATTTGATTGTT
CGCACGAAACAGCTGCGGAAATTCTTAAGCAGATTTTGTTCATGGGCATGATGACTGAATATTA
TCACTACTTCTTCACAACCCTGGACTTGTTTGCTTTAGATCTGGAACTCTATAGGTACAGCGGT
GTAAATATGACTGGATTTCGGTTGCTGAATATTGACAACCCTCACGTGTCATCCATCATTGAGA
AGTGGTCCATGGAGAGGTTGCAGGCCCCGCCCAGACCCGAGACTGGTCTTCTGGATGGCATGAT
GACAACTGAAGCAGCGCTGATGTACGATGCTGTGTACATGGTAGCCATTGCGTCCCACCGTGCC
TCTCAGCTGACCGTCAGCTCCCTGCAGTGCCATCGACATAAGCCATGGCGCCTTGGACCCAGAT
TTATGAACCTCATCAAAGAGGCTCGGTGGGACGGCTTGACTGGGCGGATCACCTTCAATAAGAC
CGATGGCTTGAGAAAGGATTTTGACCTGGACATTATCAGTCTCAAAGAGGAAGGAACTGAAAAG
GCCTCTGGTGAAGTGTCTAAACACTTGTATAAAGTGTGGAAGAAGATTGGGATTTGGAACTCCA
ACAGTGGGCTGAACATGACGGATGGCAACAGAGACAGGTCCAACAATATCACGGACTCGCTGGC
TAACCGCACACTCATTGTCACCACTATTCTGGAAGAGCCCTACGTGATGTACAGGAAATCCGAT
AAGCCCTTGTATGGAAACGACAGGTTTGAAGGATATTGCCTGGATCTGCTGAAAGAACTGTCCA
ATATCCTGGGTTTTCTTTACGATGTTAAACTGGTTCCTGATGGCAAATATGGAGCACAGAATGA
CAAAGGGGAATGGAATGGGATGGTAAAAGAACTCATCGACCACAGAGCTGACCTGGCAGTGGCC
CCTCTCACCATCACATACGTACGGGAGAAAGTCATTGACTTCTCCAAGCCCTTCATGACCCTGG
GCATTAGCATCCTTTACCGGAAGCCCAATGGAACCAACCCGGGTGTCTTCTCCTTCCTCAACCC
CCTATCTCCGGACATTTGGATGTACGTGCTGCTCGCCTGCCTAGGAGTCAGTTGTGTACTGTTT
GTGATTGCGAGGTTCACACCCTACGAGTGGTATAACCCCCACCCATGCAACCCCGACTCAGACG
TGGTGGAAAACAATTTCACTTTGCTAAATAGTTTCTGGTTTGGAGTTGGAGCTCTCATGCAGCA
AGGATCAGAGCTGATGCCCAAGGCTCTATCGACCAGAATAGTTGGAGGAATATGGTGGTTTTTC
ACCCTAATCATCATTTCATCCTACACGGCCAACCTGGCTGCCTTCTTGACGGTAGAAAGAATGG
AATCCCCCATCGATTCCGCAGACGATCTGGCCAAACAAACCAAGATAGAATATGGGGCAGTCAG
AGATGGCTCGACGATGACCTTCTTCAAGAAATCAAAGATCTCCACCTATGAGAAAATGTGGGCT
TTCATGAGCAGTAGACAGCAGAGCGCACTGGTTAAAAACAGTGACGAGGGGATCCAAAGGGTGC
TCACCACCGACTACGCACTGCTGATGGAGTCCACCAGCATTGAGTATGTGACGCAGAGGAACTG
CAACCTCACTCAGATCGGGGGCCTCATAGACTCCAAAGGCTATGGAGTGGGGACGCCTATCGGC
TCCCCTTACCGGGATAAAATTACGATTGCCATTCTTCAACTGCAAGAAGAAGGGAAGCTTCATA
TGATGAAAGAGAAGTGGTGGAGGGGGAATGGCTGCCCTGAAGAAGACAGTAAGGAAGCCAGTGC
TCTGGGAGTGGAAAATATCGGCGGCATCTTCATTGTTCTGGCTGCAGGACTCGTGCTTTCTGTG
TTTGTAGCCATTGGAGAATTTTTATACAAATCACGGAAGAACAATGACGTTGAGCAGGCTTTTT
GTTTCTTTTATGGACTGCAGTGTAAACAAACCCATCCGACCAACTCCACTTCCGGGACTACTTT
ATCTACAGATGTAGAGTGTGGCAAATTATTACGAGAGGAAAAGGGGATTCGGACACAGTCCTCA
GTCCATACTGTATAACTTGGATTTTTTTAAAAAGTTGTTTCCGGTAGAATTGCTTGTAATGAGT
GTTGTTTGTGCCTGCATCTATTAAACTGAAGTAGCCAGTCTGCCCTTTTCCTTATACAAGCAAA
ACGTACACACACTACTCCAGGCTCTCAGGTCAGACGGCTGGAACATCCATGCAATACATACTGA
CTGATTCAGGGCTTTTATAAGAGGAATGTATATATAGCAAACTATTCTGTCCAAAACTGTCTTT
TTGTGCTCTCTTTATGCATTAAAAATAAATGACATTTTCTTCATAAGCAAAAAATTGAGACATA
TAACAGGGCAACGCAAGGGAAAATGCTAGTTCCAGGAACTTCTTTGTATTTTTGTGAACTTTCC
CCCTCTACTTTTTCTCTCCCTGTCTCGTGTGTTCTTTAGACCTACATATTTCAAACTTTCTATA
GCTATGTCATTTCAACAAGTATGCTAGTAACTCTATTAACATTGTTAATGTTTAAATAAATTGG
TCCCAAGATTTTAAATGCATTATTTACCCAAAACCTCAAAGGTGTCTTGGCTCTTACAGATTCA
GAAACCAACACTGAAAGAATAATGGTTGAACTTGAATTTGAGGGGAGATGACCTAACCTGAGCC
TTTCTCAGGGATGTGAGGCACAGTCAAAAATGATTTCTGGACAAGAACTCAGCAACATCAGGCT
TTCAAAGAGCAGTTAGCAGTCATGTGTAGGTGTAGAGCCCCTGAGAACCTGATTAGTTTCAAAC
CATGTACTGTTTCCTAGAATTACGAACTAATTCATGACATCTTTCATTTGCTGCTCACCTGCAC
TCACCCTGTGCAATGATGAGAATCTTCCCACACGTTCGTGCACTTTCTTCCCACTCGCCTAAGA
TAGAGTAGTTCTTCTTAACTCATCTTTCCTGAGCCTTGCCAAGTTCACACTCATTTCCCTAGAC
TCGTCACTCATTATTAGTGCATCCTAAGTGTGCCATGGGGACAGACAAGGTGGAGAAAATAAAT
ACCAGAGACAATTTCCAGACGCATTAGTCACAGGTCTCTGCAGATTTATTTTCTACCTGCATTC
AAAGTGAATAATTCTCACACCAACTCGGCTTAGTGACACAGAAAGCCAATGGCATGCTTGATTT
GGTGTGACAGAAAGTGCCTGCTGTTTGCACTTGCTCCCTCCCCTTGGTAGAAAGCAGGGAAATT
GAGCTGCCTCTTGTCTCAGTTCAATATGGGATCAGTTGGTCTTTGCTCTCTGTCAGAAAATTAC
CTCTTGACTTACCAAGTGATCCCCTAGAATACATTCCAGAGAAGGAGGTTTCTGGCATCTGGAC
AATCACGCGCATGACCTTCCTGCTTAGCTTTGAATGGGTTCTGGGATCTTTGTCACAGCTCTTT
CCAATCAACTTTATATTTCCTTGGTAAAGCATGATCAGAAAATTTGACTTCTGCACTGATTGCT
TCTCAGCCTTGTTCTTTAAATAAATTAGCTCTTTATGAAAATA

hide sequence

RefSeq Acc Id:

XM_017597947 ⟹ XP_017453436

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,655,974 - 40,827,889 (-)	NCBI
mRatBN7.2	11	27,169,739 - 27,341,648 (-)	NCBI
Rnor_6.0	11	27,811,954 - 27,984,741 (-)	NCBI

Sequence:

show sequence

TCATTGTAAATTCAGCATAGCCCAGTGAAATATGAGCAAGATAAGAACGAGAGCAATCTAACTG
CAAGGTCATGGAAATTAAGCTGTTCCTCGGAAGGGGAAGAGAACCCAGAGTTGACATGCCTCTT
CACCCGGCTCTGTGGGAGGGATTTTTGAAACTGTGGAAAATGAACCTGTTAATGTTGAAGAATT
AGCTTTCAAGTTTGCAGTCACCAGTATTAACCGAAACCGAACCTTGATGCCCAATACCACATTA
ACCTATGACATCCAGAGAATTAATCTTTTTGATAGTTTTGAAGCCTCCCGAAGAGCATGCGACC
AGCTGGCTCTCGGGGTGGCCGCACTCTTCGGCCCTTCCCACAGCTCCTCCGTCAGTGCTGTACA
GTCTATTTGCAATGCTCTGGAAGTTCCACACATTCAGACTCGCTGGAAACACCCTTCCGTGGAC
AGCAGAGACCTATTTTATATCAACCTCTACCCGGACTATGCGGCTATCAGCAGGGCGGTCCTGG
ATTTGGTCCTCTATTACAACTGGAAAACAGTGACGGTGGTGTATGAAGACAGCACAGGTCTAAT
TCGTCTGCAAGAGCTCATCAAAGCTCCCTCCAGATACAACATTAAAATCAAAATCCGCCAGCTT
CCCCCTGCGAATAAAGACGCCAAACCTCTGCTCAAGGAGATGAAGAAAAGCAAAGAGTTCTATG
TGATATTTGATTGTTCGCACGAAACAGCTGCGGAAATTCTTAAGCAGATTTTGTTCATGGGCAT
GATGACTGAATATTATCACTACTTCTTCACAACCCTGGACTTGTTTGCTTTAGATCTGGAACTC
TATAGGTACAGCGGTGTAAATATGACTGGATTTCGGTTGCTGAATATTGACAACCCTCACGTGT
CATCCATCATTGAGAAGTGGTCCATGGAGAGGTTGCAGGCCCCGCCCAGACCCGAGACTGGTCT
TCTGGATGGCATGATGACAACTGAAGCAGCGCTGATGTACGATGCTGTGTACATGGTAGCCATT
GCGTCCCACCGTGCCTCTCAGCTGACCGTCAGCTCCCTGCAGTGCCATCGACATAAGCCATGGC
GCCTTGGACCCAGATTTATGAACCTCATCAAAGAGGCTCGGTGGGACGGCTTGACTGGGCGGAT
CACCTTCAATAAGACCGATGGCTTGAGAAAGGATTTTGACCTGGACATTATCAGTCTCAAAGAG
GAAGGAACTGAAAAGGCCTCTGGTGAAGTGTCTAAACACTTGTATAAAGTGTGGAAGAAGATTG
GGATTTGGAACTCCAACAGTGGGCTGAACATGACGGATGGCAACAGAGACAGGTCCAACAATAT
CACGGACTCGCTGGCTAACCGCACACTCATTGTCACCACTATTCTGGAAGAGCCCTACGTGATG
TACAGGAAATCCGATAAGCCCTTGTATGGAAACGACAGGTTTGAAGGATATTGCCTGGATCTGC
TGAAAGAACTGTCCAATATCCTGGGTTTTCTTTACGATGTTAAACTGGTTCCTGATGGCAAATA
TGGAGCACAGAATGACAAAGGGGAATGGAATGGGATGGTAAAAGAACTCATCGACCACAGAGCT
GACCTGGCAGTGGCCCCTCTCACCATCACATACGTACGGGAGAAAGTCATTGACTTCTCCAAGC
CCTTCATGACCCTGGGCATTAGCATCCTTTACCGGAAGCCCAATGGAACCAACCCGGGTGTCTT
CTCCTTCCTCAACCCCCTATCTCCGGACATTTGGATGTACGTGCTGCTCGCCTGCCTAGGAGTC
AGTTGTGTACTGTTTGTGATTGCGAGGTTCACACCCTACGAGTGGTATAACCCCCACCCATGCA
ACCCCGACTCAGACGTGGTGGAAAACAATTTCACTTTGCTAAATAGTTTCTGGTTTGGAGTTGG
AGCTCTCATGCAGCAAGGATCAGAGCTGATGCCCAAGGCTCTATCGACCAGAATAGTTGGAGGA
ATATGGTGGTTTTTCACCCTAATCATCATTTCATCCTACACGGCCAACCTGGCTGCCTTCTTGA
CGGTAGAAAGAATGGAATCCCCCATCGATTCCGCAGACGATCTGGCCAAACAAACCAAGATAGA
ATATGGGGCAGTCAGAGATGGCTCGACGATGACCTTCTTCAAGAAATCAAAGATCTCCACCTAT
GAGAAAATGTGGGCTTTCATGAGCAGTAGACAGCAGAGCGCACTGGTTAAAAACAGTGACGAGG
GGATCCAAAGGGTGCTCACCACCGACTACGCACTGCTGATGGAGTCCACCAGCATTGAGTATGT
GACGCAGAGGAACTGCAACCTCACTCAGATCGGGGGCCTCATAGACTCCAAAGGCTATGGAGTG
GGGACGCCTATCGGCTCCCCTTACCGGGATAAAATTACGATTGCCATTCTTCAACTGCAAGAAG
AAGGGAAGCTTCATATGATGAAAGAGAAGTGGTGGAGGGGGAATGGCTGCCCTGAAGAAGACAG
TAAGGAAGCCAGTGCTCTGGGAGTGGAAAATATCGGCGGCATCTTCATTGTTCTGGCTGCAGGA
CTCGTGCTTTCTGTGTTTGTAGCCATTGGAGAATTTTTATACAAATCACGGAAGAACAATGACG
TTGAGCAGAAAGGAAAGTCATCAAGACTTAGATTTTATTTTAGGAACAAAGTAAGGTTTCATGG
GAGCAAAAAAGAGAGCCTTGGTGTAGAGAAGTGTCTCTCTTTCAATGCCATCATGGAAGAGCTG
GGAATATCCCTCAAGAATCAGAAAAAATTAAAGAAAAAGTCAAGAACTAAGGGCAAATCTTCTT
TCACAAGTATCCTTACTTGTCACCAGAGACGAACTCAGAGAAAAGAGACAGTGGCGTGATCAAA
GAACACACCTGTAAGAAGAAAAAGCCCACACGTCCGCTGCACATATTTGGAGGACAGATTTCAG
AGGACTATGTCTTTATCCATAACCCCAGTCGTGGACAGAGGGGGAAGAAATGCACAATTTTTAA
AGCTCACATAGATATTACTTGAGAAGTGAAACTGATTCTTTTCAGATGAATTTGTATGCACACT
TATTTTGAATTTTTCCATTTCCTCCGATAAATTGCTATGTGTGCTTTCTAAATAATAATAAACA
AGCGGACTTTGTTTTTCATA

hide sequence

RefSeq Acc Id:

XM_039088252 ⟹ XP_038944180

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,666,740 - 41,056,966 (-)	NCBI
mRatBN7.2	11	27,187,370 - 27,570,088 (-)	NCBI

RefSeq Acc Id:

XM_039088253 ⟹ XP_038944181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,686,822 - 41,056,966 (-)	NCBI
mRatBN7.2	11	27,200,581 - 27,571,131 (-)	NCBI

RefSeq Acc Id:

XM_063270448 ⟹ XP_063126518

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,655,974 - 40,829,108 (-)	NCBI

RefSeq Acc Id:

XM_063270449 ⟹ XP_063126519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,666,740 - 40,829,109 (-)	NCBI

RefSeq Acc Id:

XM_063270451 ⟹ XP_063126521

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,656,328 - 41,056,966 (-)	NCBI

RefSeq Acc Id:

XR_005491017

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	11	40,656,280 - 41,056,966 (-)	NCBI
mRatBN7.2	11	27,170,034 - 27,570,119 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001104584	(Get FASTA)	NCBI Sequence Viewer
	NP_001104587	(Get FASTA)	NCBI Sequence Viewer
	NP_058937	(Get FASTA)	NCBI Sequence Viewer
	XP_006248115	(Get FASTA)	NCBI Sequence Viewer
	XP_006248116	(Get FASTA)	NCBI Sequence Viewer
	XP_017453436	(Get FASTA)	NCBI Sequence Viewer
	XP_038944180	(Get FASTA)	NCBI Sequence Viewer
	XP_038944181	(Get FASTA)	NCBI Sequence Viewer
	XP_063126518	(Get FASTA)	NCBI Sequence Viewer
	XP_063126519	(Get FASTA)	NCBI Sequence Viewer
	XP_063126521	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA02873	(Get FASTA)	NCBI Sequence Viewer
	AAA02874	(Get FASTA)	NCBI Sequence Viewer
	CAA77775	(Get FASTA)	NCBI Sequence Viewer
	CAA77776	(Get FASTA)	NCBI Sequence Viewer
	CAA77777	(Get FASTA)	NCBI Sequence Viewer
	EDM10647	(Get FASTA)	NCBI Sequence Viewer
	EDM10648	(Get FASTA)	NCBI Sequence Viewer
	EDM10649	(Get FASTA)	NCBI Sequence Viewer
	EDM10650	(Get FASTA)	NCBI Sequence Viewer
	EDM10651	(Get FASTA)	NCBI Sequence Viewer
	EDM10652	(Get FASTA)	NCBI Sequence Viewer
	EDM10653	(Get FASTA)	NCBI Sequence Viewer
	EDM10654	(Get FASTA)	NCBI Sequence Viewer
	EDM10655	(Get FASTA)	NCBI Sequence Viewer
	EDM10656	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045594
	ENSRNOP00000046164
	ENSRNOP00000050263
	ENSRNOP00000069424
	ENSRNOP00000078137
	ENSRNOP00000105903
GenBank Protein	P22756	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_058937 ⟸ NM_017241
- Peptide Label:	isoform 2
- UniProtKB:	P22756 (UniProtKB/Swiss-Prot), A0A140TAF9 (UniProtKB/TrEMBL), A6JL85 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERSTVLIQPGLWTRDTSWTLLYFLCYILPQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTS INRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEV PHIQTRWKHPSVDSRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKA PSRYNIKIKIRQLPPANKDAKPLLKEMKKSKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYF FTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTE AALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGRITFNKTDGL RKDFDLDIISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSNNITDSLANRT LIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGE WNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSP DIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSE LMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGS TMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLT QIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGV ENIGGIFIVLAAGLVLSVFVAIGEFLYKSRKNNDVEQCLSFNAIMEELGISLKNQKKLKKKSRT KGKSSFTSILTCHQRRTQRKETVA hide sequence

RefSeq Acc Id:	NP_001104584 ⟸ NM_001111114
- Peptide Label:	isoform 3
- UniProtKB:	P22756 (UniProtKB/Swiss-Prot), A6JL83 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERSTVLIQPGLWTRDTSWTLLYFLCYILPQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTS INRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEV PHIQTRWKHPSVDSRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKA PSRYNIKIKIRQLPPANKDAKPLLKEMKKSKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYF FTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTE AALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGRITFNKTDGL RKDFDLDIISLKEEGTEKIGIWNSNSGLNMTDGNRDRSNNITDSLANRTLIVTTILEEPYVMYR KSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADL AVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSC VLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIW WFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEK MWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGT PIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGVENIGGIFIVLAAGLV LSVFVAIGEFLYKSRKNNDVEQCLSFNAIMEELGISLKNQKKLKKKSRTKGKSSFTSILTCHQR RTQRKETVA hide sequence

RefSeq Acc Id:	NP_001104587 ⟸ NM_001111117
- Peptide Label:	isoform 1 precursor
- UniProtKB:	P22756 (UniProtKB/Swiss-Prot), F1M7M9 (UniProtKB/TrEMBL), A6JL86 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERSTVLIQPGLWTRDTSWTLLYFLCYILPQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTS INRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEV PHIQTRWKHPSVDSRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKA PSRYNIKIKIRQLPPANKDAKPLLKEMKKSKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYF FTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTE AALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGRITFNKTDGL RKDFDLDIISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSNNITDSLANRT LIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGE WNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSP DIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSE LMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGS TMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLT QIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGV ENIGGIFIVLAAGLVLSVFVAIGEFLYKSRKNNDVEQKGKSSRLRFYFRNKVRFHGSKKESLGV EKCLSFNAIMEELGISLKNQKKLKKKSRTKGKSSFTSILTCHQRRTQRKETVA hide sequence

RefSeq Acc Id:	XP_006248115 ⟸ XM_006248053
- Peptide Label:	isoform X1
- UniProtKB:	P22756 (UniProtKB/Swiss-Prot), A0A140TAG6 (UniProtKB/TrEMBL), A6JL84 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERSTVLIQPGLWTRDTSWTLLYFLCYILPQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTS INRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEV PHIQTRWKHPSVDSRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKA PSRYNIKIKIRQLPPANKDAKPLLKEMKKSKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYF FTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTE AALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGRITFNKTDGL RKDFDLDIISLKEEGTEKIGIWNSNSGLNMTDGNRDRSNNITDSLANRTLIVTTILEEPYVMYR KSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKELIDHRADL AVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVLLACLGVSC VLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALSTRIVGGIW WFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKKSKISTYEK MWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLIDSKGYGVGT PIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGVENIGGIFIVLAAGLV LSVFVAIGEFLYKSRKNNDVEQKGKSSRLRFYFRNKVRFHGSKKESLGVEKCLSFNAIMEELGI SLKNQKKLKKKSRTKGKSSFTSILTCHQRRTQRKETVA hide sequence

RefSeq Acc Id:	XP_006248116 ⟸ XM_006248054
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K830 (UniProtKB/TrEMBL), A6JL87 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERSTVLIQPGLWTRDTSWTLLYFLCYILPQTSPQVLRIGGIFETVENEPVNVEELAFKFAVTS INRNRTLMPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEV PHIQTRWKHPSVDSRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKA PSRYNIKIKIRQLPPANKDAKPLLKEMKKSKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYF FTTLDLFALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTE AALMYDAVYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGRITFNKTDGL RKDFDLDIISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSNNITDSLANRT LIVTTILEEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGE WNGMVKELIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSP DIWMYVLLACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSE LMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGS TMTFFKKSKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLT QIGGLIDSKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGV ENIGGIFIVLAAGLVLSVFVAIGEFLYKSRKNNDVEQAFCFFYGLQCKQTHPTNSTSGTTLSTD VECGKLLREEKGIRTQSSVHTV hide sequence

RefSeq Acc Id:	XP_017453436 ⟸ XM_017597947
- Peptide Label:	isoform X4
- UniProtKB:	A0A0G2JVC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPNTTLTYDIQRINLFDSFEASRRACDQLALGVAALFGPSHSSSVSAVQSICNALEVPHIQTRW KHPSVDSRDLFYINLYPDYAAISRAVLDLVLYYNWKTVTVVYEDSTGLIRLQELIKAPSRYNIK IKIRQLPPANKDAKPLLKEMKKSKEFYVIFDCSHETAAEILKQILFMGMMTEYYHYFFTTLDLF ALDLELYRYSGVNMTGFRLLNIDNPHVSSIIEKWSMERLQAPPRPETGLLDGMMTTEAALMYDA VYMVAIASHRASQLTVSSLQCHRHKPWRLGPRFMNLIKEARWDGLTGRITFNKTDGLRKDFDLD IISLKEEGTEKASGEVSKHLYKVWKKIGIWNSNSGLNMTDGNRDRSNNITDSLANRTLIVTTIL EEPYVMYRKSDKPLYGNDRFEGYCLDLLKELSNILGFLYDVKLVPDGKYGAQNDKGEWNGMVKE LIDHRADLAVAPLTITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNPLSPDIWMYVL LACLGVSCVLFVIARFTPYEWYNPHPCNPDSDVVENNFTLLNSFWFGVGALMQQGSELMPKALS TRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQTKIEYGAVRDGSTMTFFKK SKISTYEKMWAFMSSRQQSALVKNSDEGIQRVLTTDYALLMESTSIEYVTQRNCNLTQIGGLID SKGYGVGTPIGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEDSKEASALGVENIGGIF IVLAAGLVLSVFVAIGEFLYKSRKNNDVEQKGKSSRLRFYFRNKVRFHGSKKESLGVEKCLSFN AIMEELGISLKNQKKLKKKSRTKGKSSFTSILTCHQRRTQRKETVA hide sequence

Ensembl Acc Id:

ENSRNOP00000069424 ⟸ ENSRNOT00000085629

Ensembl Acc Id:

ENSRNOP00000046164 ⟸ ENSRNOT00000051060

Ensembl Acc Id:

ENSRNOP00000050263 ⟸ ENSRNOT00000042581

Ensembl Acc Id:

ENSRNOP00000074448 ⟸ ENSRNOT00000081066

Ensembl Acc Id:

ENSRNOP00000045594 ⟸ ENSRNOT00000050073

RefSeq Acc Id:	XP_038944180 ⟸ XM_039088252
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5Y1Z7 (UniProtKB/TrEMBL), A6JL88 (UniProtKB/TrEMBL), A0A0G2K830 (UniProtKB/TrEMBL), A6JL87 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038944181 ⟸ XM_039088253
- Peptide Label:	isoform X7
- UniProtKB:	A6JL92 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000078137 ⟸ ENSRNOT00000100916

RefSeq Acc Id:	XP_063126518 ⟸ XM_063270448
- Peptide Label:	isoform X5
- UniProtKB:	A0A0G2JVC0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126521 ⟸ XM_063270451
- Peptide Label:	isoform X8
- UniProtKB:	A0A0G2K830 (UniProtKB/TrEMBL), A6JL87 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063126519 ⟸ XM_063270449
- Peptide Label:	isoform X6
- UniProtKB:	A0A0G2K830 (UniProtKB/TrEMBL), A6JL87 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000105903 ⟸ ENSRNOT00000147508

Protein Domains

Ionotropic glutamate receptor C-terminal Ionotropic glutamate receptor L-glutamate and

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P22756-F1-model_v2	AlphaFold	P22756	1-949	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2732	AgrOrtholog
BioCyc Gene	G2FUF-22035	BioCyc
Ensembl Genes	ENSRNOG00000001575	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000042581	ENTREZGENE
	ENSRNOT00000050073	ENTREZGENE
	ENSRNOT00000051060	ENTREZGENE
	ENSRNOT00000085629	ENTREZGENE
	ENSRNOT00000100916	ENTREZGENE
	ENSRNOT00000147508	ENTREZGENE
Gene3D-CATH	1.10.287.70	UniProtKB/Swiss-Prot
	3.40.50.2300	UniProtKB/Swiss-Prot
	Periplasmic binding protein-like II	UniProtKB/Swiss-Prot
InterPro	ANF_lig-bd_rcpt	UniProtKB/Swiss-Prot
	Glu/Gly-bd	UniProtKB/Swiss-Prot
	Iono_rcpt_met	UniProtKB/Swiss-Prot
	Ionotropic_Glu_rcpt	UniProtKB/Swiss-Prot
	Iontro_rcpt	UniProtKB/Swiss-Prot
	Peripla_BP_I	UniProtKB/Swiss-Prot
KEGG Report	rno:29559	UniProtKB/Swiss-Prot
NCBI Gene	29559	ENTREZGENE
PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	UniProtKB/Swiss-Prot
Pfam	ANF_receptor	UniProtKB/Swiss-Prot
	Lig_chan	UniProtKB/Swiss-Prot
	Lig_chan-Glu_bd	UniProtKB/Swiss-Prot
PhenoGen	Grik1	PhenoGen
PRINTS	NMDARECEPTOR	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000001575	RatGTEx
SMART	Lig_chan-Glu_bd	UniProtKB/Swiss-Prot
	PBPe	UniProtKB/Swiss-Prot
Superfamily-SCOP	Periplasmic binding protein-like II	UniProtKB/Swiss-Prot
	SSF53822	UniProtKB/Swiss-Prot
TIGR	TC221180
UniProt	A0A0G2JVC0	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K830	ENTREZGENE, UniProtKB/TrEMBL
	A0A140TAF9	ENTREZGENE, UniProtKB/TrEMBL
	A0A140TAG6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y1Z7	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJK6_RAT	UniProtKB/TrEMBL
	A6JL82_RAT	UniProtKB/TrEMBL
	A6JL83	ENTREZGENE, UniProtKB/TrEMBL
	A6JL84	ENTREZGENE, UniProtKB/TrEMBL
	A6JL85	ENTREZGENE, UniProtKB/TrEMBL
	A6JL86	ENTREZGENE, UniProtKB/TrEMBL
	A6JL87	ENTREZGENE, UniProtKB/TrEMBL
	A6JL88	ENTREZGENE, UniProtKB/TrEMBL
	A6JL89_RAT	UniProtKB/TrEMBL
	A6JL91_RAT	UniProtKB/TrEMBL
	A6JL92	ENTREZGENE, UniProtKB/TrEMBL
	F1M7M9	ENTREZGENE, UniProtKB/TrEMBL
	GRIK1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-11	Grik1	glutamate ionotropic receptor kainate type subunit 1	Grik1	glutamate receptor, ionotropic, kainate 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Grik1	Glutamate receptor, ionotropic, kainate 1			Symbol and Name status set to approved	70586	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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RGD Manual Annotations

Imported Annotations - KEGG (archival)