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Gene: Rpl38 (ribosomal protein L38) Rattus norvegicus

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Symbol:

Rpl38 (Ensembl: Rpl38-ps8)

Name:

ribosomal protein L38 (Ensembl:ribosomal protein L38, pseudogene 8)

RGD ID:

1305573

Description:

Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation and protein-RNA complex assembly. Predicted to act upstream of or within several processes, including 90S preribosome assembly; middle ear morphogenesis; and sensory perception of sound. Part of cytosolic large ribosomal subunit. Orthologous to human RPL38 (ribosomal protein L38); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 6-propyl-2-thiouracil; ammonium chloride; amphetamine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

60S ribosomal protein L38; large ribosomal subunit protein eL38; LOC366919; MGC125176; ribosomal protein L38 (predicted); Rpl38_predicted

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RPL38 (ribosomal protein L38)	RGD	RGD
Mus musculus (house mouse):	Rpl38 (ribosomal protein L38)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Rpl38 (ribosomal protein L38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RPL38 (ribosomal protein L38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RPL38 (ribosomal protein L38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rpl38 (ribosomal protein L38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RPL38 (ribosomal protein L38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RPL38 (ribosomal protein L38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rpl38 (ribosomal protein L38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Rpl38 (ribosomal protein L38)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	RPL38 (ribosomal protein L38)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rpl38 (ribosomal protein L38)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rpl38 (ribosomal protein L38)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	rpl38 (ribosomal protein L38)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rpl38 (ribosomal protein L38)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rpl-38	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rpl-38	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RPL38	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RpL38	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RpL38	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rpl38	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rpl38	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)

Related Pseudogenes:

Rpl38-ps1 Rpl38-ps2 Rpl38-ps3 Rpl38-ps8 Rpl38-ps9

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	100,200,414 - 100,204,070 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	98,601,397 - 98,601,609 (+)	Ensembl				GRCr8
GRCr8 Ensembl	3	176,399,692 - 176,400,005 (+)	Ensembl				GRCr8
GRCr8 Ensembl	10	100,200,428 - 100,204,070 (+)	Ensembl				GRCr8
GRCr8 Ensembl	2	187,593,943 - 187,594,256 (-)	Ensembl				GRCr8
GRCr8 Ensembl	16	10,188,932 - 10,189,144 (-)	Ensembl				GRCr8
mRatBN7.2	10	99,701,330 - 99,705,004 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	99,701,362 - 99,705,004 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	14	94,400,027 - 94,400,239 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	16	10,182,742 - 10,182,954 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	2	184,905,204 - 184,905,416 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	3	155,980,625 - 155,981,036 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	104,759,311 - 104,762,925 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	104,222,430 - 104,226,044 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	99,622,436 - 99,626,071 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	103,198,424 - 103,202,059 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	199,479,007 - 199,479,309 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	102,858,164 - 102,861,799 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	104,545,644 - 104,549,279 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	98,292,414 - 98,296,049 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

otitis media (ISS)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

4,4'-diaminodiphenylmethane (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

ammonium chloride (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (EXP)

cadmium dichloride (ISO)

chloropicrin (ISO)

chlorpyrifos (ISO)

copper atom (ISO)

copper(0) (ISO)

cylindrospermopsin (ISO)

disulfiram (ISO)

diuron (ISO)

elemental selenium (ISO)

enzyme inhibitor (ISO)

epoxiconazole (ISO)

ethanol (ISO)

fenthion (ISO)

genistein (ISO)

ivermectin (ISO)

methidathion (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

methylparaben (ISO)

N,N-diethyl-m-toluamide (EXP)

N-methyl-4-phenylpyridinium (ISO)

paracetamol (ISO)

perfluorononanoic acid (ISO)

permethrin (EXP)

potassium dichromate (ISO)

SB 431542 (ISO)

selenium atom (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

titanium dioxide (ISO)

triadimefon (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

tungsten (ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

90S preribosome assembly (ISO)

axial mesoderm development (ISO)

cytoplasmic translation (ISO)

middle ear morphogenesis (ISO)

ossification (ISO)

protein-RNA complex assembly (IBA)

regulation of translation (ISO)

sensory perception of sound (ISO)

skeletal system development (ISO)

translation (IEA)

Cellular Component

cytoplasm (IEA,ISO)

cytosol (ISO)

cytosolic large ribosomal subunit (IBA,IDA,ISO)

cytosolic ribosome (ISO)

endoplasmic reticulum (ISO)

eukaryotic 80S initiation complex (ISO)

postsynaptic density (ISO)

ribonucleoprotein complex (IEA)

ribosome (IEA)

synapse (ISO)

Molecular Function

protein binding (ISO)

structural constituent of ribosome (IBA,IEA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

translation pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
5.	Isolation of eukaryotic ribosomal proteins. Purification and characterization of the 60 S ribosomal subunit proteins La, Lb, Lf, P1, P2, L13', L14, L18', L20, and L38.	Tsurugi K, etal., J Biol Chem. 1978 Feb 10;253(3):946-55.

Additional References at PubMed

PMID:1840484	PMID:12477932	PMID:12962325	PMID:15489334	PMID:16452087	PMID:21062742	PMID:21170055	PMID:21423176	PMID:21529712	PMID:24625528	PMID:25957688

Genomics

Comparative Map Data

Rpl38
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	100,200,414 - 100,204,070 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	14	98,601,397 - 98,601,609 (+)	Ensembl				GRCr8
GRCr8 Ensembl	3	176,399,692 - 176,400,005 (+)	Ensembl				GRCr8
GRCr8 Ensembl	10	100,200,428 - 100,204,070 (+)	Ensembl				GRCr8
GRCr8 Ensembl	2	187,593,943 - 187,594,256 (-)	Ensembl				GRCr8
GRCr8 Ensembl	16	10,188,932 - 10,189,144 (-)	Ensembl				GRCr8
mRatBN7.2	10	99,701,330 - 99,705,004 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	99,701,362 - 99,705,004 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	14	94,400,027 - 94,400,239 (+)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	16	10,182,742 - 10,182,954 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	2	184,905,204 - 184,905,416 (-)	Ensembl				mRatBN7.2
mRatBN7.2 Ensembl	3	155,980,625 - 155,981,036 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	10	104,759,311 - 104,762,925 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	104,222,430 - 104,226,044 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	99,622,436 - 99,626,071 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	103,198,424 - 103,202,059 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	199,479,007 - 199,479,309 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	10	102,858,164 - 102,861,799 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	10	104,545,644 - 104,549,279 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	10	98,292,414 - 98,296,049 (+)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

RPL38
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	74,203,678 - 74,210,655 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	74,202,841 - 74,210,655 (+)	Ensembl			hg38	GRCh38
GRCh37	17	72,199,817 - 72,206,794 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	69,711,390 - 69,717,614 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	17	69,711,411 - 69,717,612	NCBI
Celera	17	68,786,341 - 68,792,564 (+)	NCBI		Celera
Cytogenetic Map	17	q25.1	NCBI
HuRef	17	67,610,253 - 67,616,478 (+)	NCBI		HuRef
CHM1_1	17	72,264,424 - 72,270,648 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	75,094,516 - 75,101,493 (+)	NCBI		T2T-CHM13v2.0

Rpl38
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	114,558,644 - 114,563,159 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	114,559,350 - 114,563,157 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	11	114,667,818 - 114,672,333 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	114,668,524 - 114,672,331 (+)	Ensembl			mm10	GRCm38
MGSCv37	11	114,529,857 - 114,533,645 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	11	114,484,614 - 114,488,421 (+)	NCBI		MGSCv36	mm8
Celera	11	126,419,661 - 126,431,615 (+)	NCBI		Celera
Cytogenetic Map	11	E2	NCBI
cM Map	11	79.82	NCBI

Rpl38
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955553	1,129,633 - 1,133,896 (+)	Ensembl
ChiLan1.0	NW_004955553	1,129,607 - 1,133,896 (+)	NCBI	ChiLan1.0	ChiLan1.0

RPL38
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	90,234,364 - 90,240,640 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	95,056,818 - 95,063,078 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	68,142,367 - 68,148,637 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	73,700,597 - 73,706,492 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	73,700,597 - 73,706,492 (+)	Ensembl			panPan2	panpan1.1

RPL38
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	6,161,862 - 6,169,705 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	6,783,504 - 6,789,795 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	6,834,187 - 6,840,190 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	6,834,198 - 6,840,663 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	6,874,786 - 6,880,977 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	6,978,191 - 6,984,645 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	7,038,192 - 7,044,695 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Rpl38
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	6,744,442 - 6,748,618 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936655	242,123 - 246,415 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936655	242,259 - 246,416 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RPL38
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	6,884,902 - 6,898,764 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	12	6,884,899 - 6,889,966 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	6,911,975 - 6,917,043 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RPL38
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	47,425,014 - 47,432,401 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666077	18,239,515 - 18,245,756 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rpl38
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624801	4,180,197 - 4,198,482 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624801	4,180,507 - 4,196,514 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Rpl38
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	9	74,652,405 - 74,656,051 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Rpl38
162 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	53
Count of miRNA genes:	50
Interacting mature miRNAs:	51
Transcripts:	ENSRNOT00000030800
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354641	Bvd2	Brain ventricular dilatation QTL 2	6.36	0.001	brain ventricle morphology trait (VT:0000822)	hydrocephalus severity score (CMO:0001881)	10	93723381	107556066	Rat
8657410	Bp374	Blood pressure QTL 374			heart left ventricle size trait (VT:0002753)	heart left ventricle end-diastolic diameter (CMO:0000982)	10	67476608	107713808	Rat
61449	Ciaa2	CIA Autoantibody QTL 2	7.1		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	10	63719161	107713808	Rat
61325	Aia5	Adjuvant induced arthritis QTL 5		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1298078	Stresp5	Stress response QTL 5	2.99	0.00025	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	10	42546145	107713808	Rat
1549831	Bss6	Bone structure and strength QTL 6	4		lumbar vertebra strength trait (VT:0010574)	vertebra ultimate force (CMO:0001678)	10	58073360	103073360	Rat
12903252	Cm113	Cardiac mass QTL 113		0.047	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
2298548	Neuinf7	Neuroinflammation QTL 7	3.4		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	10	64939013	107713808	Rat
1302404	Cia27	Collagen induced arthritis QTL 27	2.6	0.0045	joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	10	76951790	107713808	Rat
1300107	Rf18	Renal function QTL 18	3.41		urine output (VT:0003620)	timed urine volume (CMO:0000260)	10	79272424	102982300	Rat
70168	Eae12	Experimental allergic encephalomyelitis QTL 12		0.0009	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	10	73599825	107713808	Rat
70171	Cari1	Carrageenan-induced inflammation QTL 1	4.9	0.0005	hypodermis integrity trait (VT:0010550)	inflammatory exudate volume (CMO:0001429)	10	54296227	107713808	Rat
12903269	Am15	Aortic mass QTL 15		0.042	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
12903266	Cm114	Cardiac mass QTL 114		0.02	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	10	66817119	107713808	Rat
1578672	Bmd16	Bone mineral density QTL 16	6.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	10	97202388	107556066	Rat
61354	Pia10	Pristane induced arthritis QTL 10		0.01	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
2313103	Bss80	Bone structure and strength QTL 80	2	0.0001	tibia strength trait (VT:1000284)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	10	62556066	107556066	Rat
12880372	Am12	Aortic mass QTL 12		0.003	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	10	66817119	107713808	Rat
70193	Mcs7	Mammary carcinoma susceptibility QTL 7	2.38		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
2313105	Bss79	Bone structure and strength QTL 79	1.8	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	10	62556066	107556066	Rat
12880375	Kidm66	Kidney mass QTL 66		0.009	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
61363	Oia3	Oil induced arthritis QTL 3		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	87807758	107713808	Rat
2316949	Gluco60	Glucose level QTL 60	3.7		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	10	14991535	107556066	Rat
12880370	Cm105	Cardiac mass QTL 105		0.008	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat
12880371	Cm106	Cardiac mass QTL 106		0.007	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	10	66817119	107713808	Rat
1300137	Bp186	Blood pressure QTL 186	3.57		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	10	91127270	107556066	Rat
11565453	Kidm58	Kidney mass QTL 58		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	10	66817119	107713808	Rat
1578663	Bss18	Bone structure and strength QTL 18	3.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	10	97202388	107556066	Rat
7387312	Bw125	Body weight QTL 125	3	0.0047	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight (CMO:0000356)	10	65390777	107713808	Rat
6893357	Bw102	Body weight QTL 102	0.5	0.36	body mass (VT:0001259)	body weight (CMO:0000012)	10	81012077	101828297	Rat
61387	Bp1	Blood pressure QTL 1	5.1		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	10	52269185	107713808	Rat
61396	Bp9	Blood pressure QTL 9	4.8	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	10	68920187	107713808	Rat
1358915	Stresp7	Stress response QTL 7	3.52		blood norepinephrine amount (VT:0005663)	plasma norepinephrine level (CMO:0001010)	10	65307813	107713808	Rat
634320	Niddm49	Non-insulin dependent diabetes mellitus QTL 49	4.41		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	10	89039175	107713808	Rat
70363	Bp71	Blood pressure QTL 71		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	10	61843496	106843496	Rat
6893366	Bw106	Body weight QTL 106	0.3	0.47	body mass (VT:0001259)	body weight (CMO:0000012)	10	70698731	107713808	Rat
1576313	Pia25	Pristane induced arthritis QTL 25			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631267	Cia20	Collagen induced arthritis QTL 20	3.2		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	23948641	107713808	Rat
1576307	Cia28	Collagen induced arthritis QTL 28			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	96620293	107713808	Rat
631269	Cia22	Collagen induced arthritis QTL 22	8.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1576308	Schws1	Schwannoma susceptibility QTL 1		0.0041	nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	10	40535708	107713808	Rat
631268	Cia21	Collagen induced arthritis QTL 21	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	14991535	107713808	Rat
631270	Cia23	Collagen induced arthritis QTL 23	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	40535708	107713808	Rat
1581559	Eae18	Experimental allergic encephalomyelitis QTL 18		0.00002	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis severity score (CMO:0001419)	10	66108888	107555881	Rat
1600367	Mcs15	Mammary carcinoma susceptibility QTL 15	4.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	10	72724423	107713808	Rat
631537	Oia4	Oil induced arthritis QTL 4			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	76128947	107713808	Rat
634354	Rends3	Renal damage susceptibility QTL 3		0.05	kidney blood vessel morphology trait (VT:0000530)	organ lesion measurement (CMO:0000677)	10	61997479	106997479	Rat
61436	Cia5	Collagen induced arthritis QTL 5	4.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	10	91727883	107713808	Rat
2301405	Cm69	Cardiac mass QTL 69		0.031	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	10	66817119	107713808	Rat

Markers in Region

D10Bir8

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	4	66,216,096 - 66,216,306	NCBI	Rnor5.0
Rnor_5.0	10	102,852,602 - 102,852,872	NCBI	Rnor5.0
RGSC_v3.4	10	104,539,788 - 104,540,057	UniSTS	RGSC3.4
RGSC_v3.4	4	66,232,144 - 66,232,353	UniSTS	RGSC3.4
Celera	10	98,286,975 - 98,287,244	UniSTS
Celera	4	62,414,402 - 62,414,611	UniSTS
Cytogenetic Map	10	q32.2	UniSTS
Cytogenetic Map	2	q15	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	hemolymphoid system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
7	1	18	52	67	138	95	11	51	36	32	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001077592	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008768393	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039086868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC101933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473948	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ210073	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ217659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ223953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ224522	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ228832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000042661 ⟹ ENSRNOP00000042022

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	2	184,905,204 - 184,905,416 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000095224 ⟹ ENSRNOP00000088903

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	10	100,200,428 - 100,204,070 (+)	Ensembl
mRatBN7.2 Ensembl	10	99,701,362 - 99,705,004 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000101867 ⟹ ENSRNOP00000088422

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	10	99,701,523 - 99,705,004 (+)	Ensembl

RefSeq Acc Id:

NM_001077592 ⟹ NP_001071060

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,200,435 - 100,204,070 (+)	NCBI
mRatBN7.2	10	99,701,369 - 99,705,004 (+)	NCBI
Rnor_6.0	10	103,198,424 - 103,202,059 (+)	NCBI
Rnor_5.0	10	102,858,164 - 102,861,799 (+)	NCBI
RGSC_v3.4	10	104,545,644 - 104,549,279 (+)	RGD
Celera	10	98,292,414 - 98,296,049 (+)	RGD

Sequence:

show sequence

GTTGTTCGGTGCTCGCTCCTGTGCTGACGCCAGAGCCGAGCGCCCGTCGCCATGCCTCGGAAAA
TTGAGGAAATCAAGGACTTTCTACTCACAGCCCGGCGGAAGGATGCCAAATCTGTCAAGATCAA
GAAAAACAAGGATAATGTAAAGTTCAAGGTCCGCTGTAGCAGGTACCTCTACACCCTGGTTATC
ACAGACAAGGAGAAGGCGGAGAAGCTGAAGCAGTCCCTGCCCCCAGGTTTGGCAGTGAAGGAGC
TGAAATGAACAGGACCTCTGCATGTGACTATTAAAAACCCTGAAAAGTCAAAAAAAAAAAAAAA
AAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008768393 ⟹ XP_008766615

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,200,414 - 100,204,070 (+)	NCBI
mRatBN7.2	10	99,701,330 - 99,705,004 (+)	NCBI
Rnor_6.0	10	103,198,443 - 103,202,059 (+)	NCBI

Sequence:

show sequence

TGTGAGTTTTTCTGGGCAGGTGCTGACGCCAGAGCCGAGCGCCCGTCGCCATGCCTCGGAAAAT
TGAGGAAATCAAGGACTTTCTACTCACAGCCCGGCGGAAGGATGCCAAATCTGTCAAGATCAAG
AAAAACAAGGATAATGTAAAGTTCAAGGTCCGCTGTAGCAGGTACCTCTACACCCTGGTTATCA
CAGACAAGGAGAAGGCGGAGAAGCTGAAGCAGTCCCTGCCCCCAGGTTTGGCAGTGAAGGAGCT
GAAATGAACAGGACCTCTGCATGTGACTATTAAAAACCCTGAAAAGTC

hide sequence

RefSeq Acc Id:

XM_039086868 ⟹ XP_038942796

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	10	100,200,455 - 100,204,070 (+)	NCBI
mRatBN7.2	10	99,701,404 - 99,705,004 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001071060	(Get FASTA)	NCBI Sequence Viewer
	XP_008766615	(Get FASTA)	NCBI Sequence Viewer
	XP_038942796	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI01934	(Get FASTA)	NCBI Sequence Viewer
	EDM06539	(Get FASTA)	NCBI Sequence Viewer
	EDM06540	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000023368.3
	ENSRNOP00000042022.1
	ENSRNOP00000042288.3
	ENSRNOP00000050353.2
	ENSRNOP00000088903
	ENSRNOP00000088903.1
GenBank Protein	P63174	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001071060 ⟸ NM_001077592
- UniProtKB:	Q3T1G5 (UniProtKB/Swiss-Prot), P63174 (UniProtKB/Swiss-Prot), A6HKI5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGL AVKELK hide sequence

RefSeq Acc Id:	XP_008766615 ⟸ XM_008768393
- Peptide Label:	isoform X1
- UniProtKB:	Q3T1G5 (UniProtKB/Swiss-Prot), P63174 (UniProtKB/Swiss-Prot), A6HKI5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLPPGL AVKELK hide sequence

RefSeq Acc Id:	XP_038942796 ⟸ XM_039086868
- Peptide Label:	isoform X1
- UniProtKB:	Q3T1G5 (UniProtKB/Swiss-Prot), P63174 (UniProtKB/Swiss-Prot), A6HKI5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000088422 ⟸ ENSRNOT00000101867

Ensembl Acc Id:

ENSRNOP00000088903 ⟸ ENSRNOT00000095224

Ensembl Acc Id:

ENSRNOP00000042022 ⟸ ENSRNOT00000042661

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P63174-F1-model_v2	AlphaFold	P63174	1-70	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305573	AgrOrtholog
BioCyc Gene	G2FUF-22733	BioCyc
Ensembl Genes	ENSRNOG00000030747	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000033686	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000048701	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000049047	Ensembl, UniProtKB/Swiss-Prot
	ENSRNOG00000066047	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000023369.5	UniProtKB/Swiss-Prot
	ENSRNOT00000042661.3	UniProtKB/Swiss-Prot
	ENSRNOT00000044141.5	UniProtKB/Swiss-Prot
	ENSRNOT00000050489.4	UniProtKB/Swiss-Prot
	ENSRNOT00000095224	ENTREZGENE
	ENSRNOT00000095224.1	UniProtKB/Swiss-Prot
Gene3D-CATH	3.30.720.90	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7371608	IMAGE-MGC_LOAD
InterPro	Ribosomal_L38e	UniProtKB/Swiss-Prot
	Ribosomal_L38e_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:689284	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:125176	IMAGE-MGC_LOAD
NCBI Gene	Rpl38	ENTREZGENE
PANTHER	60S RIBOSOMAL PROTEIN L38	UniProtKB/Swiss-Prot
	PTHR10965	UniProtKB/Swiss-Prot
Pfam	Ribosomal_L38e	UniProtKB/Swiss-Prot
PhenoGen	Rpl38	PhenoGen
RatGTEx	ENSRNOG00000030747	RatGTEx
	ENSRNOG00000033686	RatGTEx
	ENSRNOG00000048701	RatGTEx
	ENSRNOG00000049047	RatGTEx
	ENSRNOG00000066047	RatGTEx
UniProt	A0A8I6AIV1_RAT	UniProtKB/TrEMBL
	A6HKI5	ENTREZGENE, UniProtKB/TrEMBL
	P63174	ENTREZGENE
	Q3T1G5	ENTREZGENE
	RL38_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	P23411	UniProtKB/Swiss-Prot
	Q3T1G5	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-05-24	Rpl38	ribosomal protein L38	LOC688248	similar to 60S ribosomal protein L38	Data merged from RGD:1591177	1643240	APPROVED
2007-02-07	Rpl38	ribosomal protein L38	Rpl38_predicted	ribosomal protein L38 (predicted)	Symbol and Name updated	1299863	APPROVED
2007-02-07	Rpl38_predicted	ribosomal protein L38 (predicted)	Rpl38_retired	60S ribosomal protein L38	Data merged from RGD:1594769	737654	APPROVED
2007-02-07	Rpl38_retired	N-glycanase 1	Rpl38	60S ribosomal protein L38	Symbol updated	1299863	PROVISIONAL
2006-11-20	Rpl38	60S ribosomal protein L38			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-11-20	LOC688248	similar to 60S ribosomal protein L38			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-01-12	Rpl38_predicted	ribosomal protein L38 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI

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