Rpl38-ps2 (ribosomal protein L38, pseudogene 2) - Rat Genome Database

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Gene: Rpl38-ps2 (ribosomal protein L38, pseudogene 2) Rattus norvegicus
Analyze
Symbol: Rpl38-ps2
Name: ribosomal protein L38, pseudogene 2
RGD ID: 1589907
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L38 pseudogene; LOC689671
Related Functional Gene: Rpl38  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81498,601,342 - 98,601,673 (+)NCBIGRCr8
mRatBN7.21494,399,995 - 94,400,277 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.014104,452,887 - 104,453,167 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014104,186,079 - 104,186,345 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414100,950,476 - 100,950,688 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1493,422,973 - 93,423,253 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)149255388695876975Rat


Expression


Sequence


RefSeq Acc Id: XR_594306
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1493,422,970 - 93,423,253 (+)NCBI
RefSeq Acc Id: XR_595945
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.014104,452,884 - 104,453,167 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14888 BioCyc
NCBI Gene 689671 ENTREZGENE
PhenoGen Rpl38-ps2 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-12-02 Rpl38-ps2  ribosomal protein L38, pseudogene 2  LOC689671  60S ribosomal protein L38 pseudogene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC689671  60S ribosomal protein L38 pseudogene  LOC682065  similar to 60S ribosomal protein L38  Data merged from RGD:1588102 1643240 APPROVED
2006-11-20 LOC689671  60S ribosomal protein L38 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682065  similar to 60S ribosomal protein L38      Symbol and Name status set to provisional 70820 PROVISIONAL