Phactr1 (phosphatase and actin regulator 1) - Rat Genome Database

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Gene: Phactr1 (phosphatase and actin regulator 1) Rattus norvegicus
Analyze
Symbol: Phactr1
Name: phosphatase and actin regulator 1
RGD ID: 1303187
Description: Enables protein phosphatase 1 binding activity. Involved in cellular response to mechanical stimulus; positive regulation of gene expression; and regulation of modification of postsynaptic structure. Located in cytoplasm and nucleus. Is active in glutamatergic synapse and postsynapse. Biomarker of myocardial infarction. Human ortholog(s) of this gene implicated in artery disease (multiple) and brain disease (multiple). Orthologous to human PHACTR1 (phosphatase and actin regulator 1); INTERACTS WITH 17beta-estradiol 3-benzoate; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC112561
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,769,006 - 22,246,227 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1721,768,662 - 22,244,586 (-)EnsemblGRCr8
mRatBN7.21721,560,364 - 22,040,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1721,562,721 - 22,039,831 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1721,452,066 - 21,925,681 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01723,055,730 - 23,529,379 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01721,379,161 - 21,852,788 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01723,245,423 - 23,761,207 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01725,209,368 - 25,713,282 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41727,393,237 - 27,884,127 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1721,259,994 - 21,732,655 (-)NCBICelera
RGSC_v3.11727,395,233 - 27,885,918 (-)NCBI
Cytogenetic Map17p14-p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA,IEA)
cytosol  (IEA,ISO,ISS)
glutamatergic synapse  (IDA,IEP,IMP)
nucleus  (IDA,IEA,ISO,ISS)
postsynapse  (IDA,IEP,IMP)
synapse  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phactrs 1-4: A family of protein phosphatase 1 and actin regulatory proteins. Allen PB, etal., Proc Natl Acad Sci U S A 2004 May 4;101(18):7187-92. Epub 2004 Apr 23.
2. Myocardial Infarction-Associated SNP at 6p24 Interferes With MEF2 Binding and Associates With PHACTR1 Expression Levels in Human Coronary Arteries. Beaudoin M, etal., Arterioscler Thromb Vasc Biol. 2015 Jun;35(6):1472-9. doi: 10.1161/ATVBAHA.115.305534. Epub 2015 Apr 2.
3. Genetic heritability of ischemic stroke and the contribution of previously reported candidate gene and genomewide associations. Bevan S, etal., Stroke. 2012 Dec;43(12):3161-7. doi: 10.1161/STROKEAHA.112.665760. Epub 2012 Oct 4.
4. PHACTR1 gene polymorphism with the risk of coronary artery disease in Chinese Han population. Chen L, etal., Postgrad Med J. 2019 Feb;95(1120):67-71. doi: 10.1136/postgradmedj-2018-136298. Epub 2019 Feb 18.
5. National French registry of spontaneous coronary artery dissections: prevalence of fibromuscular dysplasia and genetic analyses. Combaret N, etal., EuroIntervention. 2021 Aug 27;17(6):508-515. doi: 10.4244/EIJ-D-20-01046.
6. Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection. Debette S, etal., Nat Genet. 2015 Jan;47(1):78-83. doi: 10.1038/ng.3154. Epub 2014 Nov 24.
7. Molecular basis for substrate specificity of the Phactr1/PP1 phosphatase holoenzyme. Fedoryshchak RO, etal., Elife. 2020 Sep 25;9:e61509. doi: 10.7554/eLife.61509.
8. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
9. Investigating Coronary Artery Disease methylome through targeted bisulfite sequencing. Ghose S, etal., Gene. 2019 Dec 30;721:144107. doi: 10.1016/j.gene.2019.144107. Epub 2019 Sep 6.
10. Differential expression of PHACTR1 in atheromatous versus normal carotid artery tissue. Green IE, etal., J Clin Neurosci. 2020 Apr;74:265-267. doi: 10.1016/j.jocn.2020.01.018. Epub 2020 Jan 21.
11. Genome-wide association study in a Lebanese cohort confirms PHACTR1 as a major determinant of coronary artery stenosis. Hager J, etal., PLoS One. 2012;7(6):e38663. doi: 10.1371/journal.pone.0038663. Epub 2012 Jun 20.
12. Inhibiting phosphatase and actin regulator 1 expression is neuroprotective in the context of traumatic brain injury. Jing Y, etal., Neural Regen Res. 2023 Jul;18(7):1578-1583. doi: 10.4103/1673-5374.357904.
13. The Early-Onset Myocardial Infarction Associated PHACTR1 Gene Regulates Skeletal and Cardiac Alpha-Actin Gene Expression. Kelloniemi A, etal., PLoS One. 2015 Jun 22;10(6):e0130502. doi: 10.1371/journal.pone.0130502. eCollection 2015.
14. PHACTR1 Is a Genetic Susceptibility Locus for Fibromuscular Dysplasia Supporting Its Complex Genetic Pattern of Inheritance. Kiando SR, etal., PLoS Genet. 2016 Oct 28;12(10):e1006367. doi: 10.1371/journal.pgen.1006367. eCollection 2016 Oct.
15. PHACTR1 haplotypes are associated with carotid plaque presence and affect PHACTR1 mRNA expression in carotid plaque tissue. Kuveljic J, etal., Gene. 2019 Aug 20;710:273-278. doi: 10.1016/j.gene.2019.06.020. Epub 2019 Jun 12.
16. Association of PHACTR1 intronic variants with the first myocardial infarction and their effect on PHACTR1 mRNA expression in PBMCs. Kuveljic J, etal., Gene. 2021 Apr 5;775:145428. doi: 10.1016/j.gene.2021.145428. Epub 2021 Jan 16.
17. Genetic deficiency of Phactr1 promotes atherosclerosis development via facilitating M1 macrophage polarization and foam cell formation. Li T, etal., Clin Sci (Lond). 2020 Sep 18;134(17):2353-2368. doi: 10.1042/CS20191241.
18. The alleles of AGT and HIF1A gene affect the risk of hypertension in plateau residents. Li Z, etal., Exp Biol Med (Maywood). 2022 Feb;247(3):237-245. doi: 10.1177/15353702211055838. Epub 2021 Nov 10.
19. Multiethnic Genome-Wide Association Study of Subclinical Atherosclerosis in Individuals With Type 2 Diabetes. Lu Y, etal., Circ Genom Precis Med. 2021 Aug;14(4):e003258. doi: 10.1161/CIRCGEN.120.003258. Epub 2021 Jul 9.
20. PHACTR1, a coronary artery disease risk gene, mediates endothelial dysfunction. Ma X, etal., Front Immunol. 2022 Aug 25;13:958677. doi: 10.3389/fimmu.2022.958677. eCollection 2022.
21. Increased Risk of CHD in the Presence of rs7865618 (A allele): Tehran Lipid and Glucose Study. Matoo S, etal., Arch Iran Med. 2017 Mar;20(3):153-157.
22. Association of six genetic variants with myocardial infarction. Matsuoka R, etal., Int J Mol Med. 2015 May;35(5):1451-9. doi: 10.3892/ijmm.2015.2115. Epub 2015 Feb 27.
23. Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants. Myocardial Infarction Genetics Consortium, etal., Nat Genet. 2009 Mar;41(3):334-41. doi: 10.1038/ng.327. Epub 2009 Feb 8.
24. PHACTR1 genotype predicts coronary artery disease in patients with familial hypercholesterolemia. Paquette M, etal., J Clin Lipidol. 2018 Jul-Aug;12(4):966-971. doi: 10.1016/j.jacl.2018.04.012. Epub 2018 Apr 30.
25. Risk loci for coronary artery calcification replicated at 9p21 and 6q24 in the Heinz Nixdorf Recall Study. Pechlivanis S, etal., BMC Med Genet. 2013 Feb 8;14:23. doi: 10.1186/1471-2350-14-23.
26. PHACTR1 Gene Polymorphism Is Associated with Increased Risk of Developing Premature Coronary Artery Disease in Mexican Population. Pérez-Hernández N, etal., Int J Environ Res Public Health. 2016 Aug 9;13(8):803. doi: 10.3390/ijerph13080803.
27. Genetic susceptibility to coronary heart disease in type 2 diabetes: 3 independent studies. Qi L, etal., J Am Coll Cardiol. 2011 Dec 13;58(25):2675-82. doi: 10.1016/j.jacc.2011.08.054.
28. Genetic and environmental risk factors for atherosclerosis regulate transcription of phosphatase and actin regulating gene PHACTR1. Reschen ME, etal., Atherosclerosis. 2016 Jul;250:95-105. doi: 10.1016/j.atherosclerosis.2016.04.025. Epub 2016 May 2.
29. GOA pipeline RGD automated data pipeline
30. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
31. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
32. Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction. Saw J, etal., Nat Commun. 2020 Sep 4;11(1):4432. doi: 10.1038/s41467-020-17558-x.
33. The rs12526453 Polymorphism in an Intron of the PHACTR1 Gene and Its Association with 5-Year Mortality of Patients with Myocardial Infarction. Szpakowicz A, etal., PLoS One. 2015 Jun 18;10(6):e0129820. doi: 10.1371/journal.pone.0129820. eCollection 2015.
34. Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection. Turley TN, etal., JAMA Cardiol. 2020 Aug 1;5(8):929-938. doi: 10.1001/jamacardio.2020.0872.
35. Genome-wide association study of coronary and aortic calcification implicates risk loci for coronary artery disease and myocardial infarction. van Setten J, etal., Atherosclerosis. 2013 Jun;228(2):400-5. doi: 10.1016/j.atherosclerosis.2013.02.039. Epub 2013 Mar 13.
36. Common genetic variants and subclinical atherosclerosis: The Multi-Ethnic Study of Atherosclerosis (MESA). Vargas JD, etal., Atherosclerosis. 2016 Feb;245:230-6. doi: 10.1016/j.atherosclerosis.2015.11.034. Epub 2015 Dec 8.
37. Genetic Study of PHACTR1 and Fibromuscular Dysplasia, Meta-Analysis and Effects on Clinical Features of Patients: The ARCADIA-POL Study. Warchol-Celinska E, etal., Hypertension. 2020 Jul;76(1):e4-e7. doi: 10.1161/HYPERTENSIONAHA.120.14793. Epub 2020 Jun 1.
38. Genetic analysis for a shared biological basis between migraine and coronary artery disease. Winsvold BS, etal., Neurol Genet. 2015 Jul 2;1(1):e10. doi: 10.1212/NXG.0000000000000010. eCollection 2015 Jun.
39. Shared genetic risk between migraine and coronary artery disease: A genome-wide analysis of common variants. Winsvold BS, etal., PLoS One. 2017 Sep 28;12(9):e0185663. doi: 10.1371/journal.pone.0185663. eCollection 2017.
40. PHACTR1 is associated with disease progression in Chinese Moyamoya disease. Yang Y, etal., PeerJ. 2020 May 5;8:e8841. doi: 10.7717/peerj.8841. eCollection 2020.
41. PHACTR1 and SLC22A3 gene polymorphisms are associated with reduced coronary artery disease risk in the male Chinese Han population. Zhao Q, etal., Oncotarget. 2017 Jan 3;8(1):658-663. doi: 10.18632/oncotarget.13506.
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:22976292   PMID:30053369   PMID:30256902  


Genomics

Comparative Map Data
Phactr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,769,006 - 22,246,227 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1721,768,662 - 22,244,586 (-)EnsemblGRCr8
mRatBN7.21721,560,364 - 22,040,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1721,562,721 - 22,039,831 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1721,452,066 - 21,925,681 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01723,055,730 - 23,529,379 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01721,379,161 - 21,852,788 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01723,245,423 - 23,761,207 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01725,209,368 - 25,713,282 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41727,393,237 - 27,884,127 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1721,259,994 - 21,732,655 (-)NCBICelera
RGSC_v3.11727,395,233 - 27,885,918 (-)NCBI
Cytogenetic Map17p14-p12NCBI
PHACTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38612,716,767 - 13,287,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl612,716,312 - 13,290,446 (+)Ensemblhg38GRCh38
GRCh37612,716,999 - 13,288,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36612,825,819 - 13,395,507 (+)NCBIBuild 36Build 36hg18NCBI36
Celera613,945,879 - 14,520,501 (+)NCBICelera
Cytogenetic Map6p24.1NCBI
HuRef612,649,580 - 13,225,071 (+)NCBIHuRef
CHM1_1612,719,328 - 13,290,404 (+)NCBICHM1_1
T2T-CHM13v2.0612,585,196 - 13,161,093 (+)NCBIT2T-CHM13v2.0
Phactr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391342,833,909 - 43,292,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1342,834,099 - 43,292,002 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381342,680,374 - 43,138,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1342,680,623 - 43,138,526 (+)Ensemblmm10GRCm38
MGSCv371342,775,992 - 43,233,895 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361342,691,595 - 43,149,498 (+)NCBIMGSCv36mm8
Celera1343,759,051 - 44,223,388 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.05NCBI
Phactr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,395,088 - 1,913,847 (-)Ensembl
ChiLan1.0NW_0049554651,395,418 - 1,915,820 (-)NCBIChiLan1.0ChiLan1.0
PHACTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2527,369,901 - 27,944,831 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1623,359,830 - 23,934,840 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0612,560,862 - 13,136,126 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1612,920,920 - 13,508,965 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl612,922,871 - 13,505,609 (+)EnsemblpanPan2panpan1.1
PHACTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13512,233,152 - 12,745,031 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3512,491,067 - 12,741,754 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3512,140,823 - 12,694,920 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03512,289,444 - 12,843,408 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3512,291,040 - 12,844,113 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13512,116,414 - 12,670,075 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03512,167,394 - 12,723,499 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03513,491,510 - 14,046,540 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Phactr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494611,773,444 - 12,269,374 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493653442,433 - 536,171 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493653442,354 - 323,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHACTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl79,105,874 - 9,666,881 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.179,105,422 - 9,666,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.279,692,832 - 9,955,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHACTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11758,859,456 - 59,440,969 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1758,862,828 - 59,133,298 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604412,759,821 - 13,333,695 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phactr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475612,934,212 - 13,447,326 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462475612,935,048 - 13,449,312 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Phactr1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11461,680,165 - 62,154,948 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Phactr1
4922 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:61
Interacting mature miRNAs:64
Transcripts:ENSRNOT00000046523
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
1582224Epfw4Epididymal fat weight QTL 43.50.0058epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)17920650523859062Rat
1582225Bw67Body weight QTL 676.20.0001body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
1582226Bw64Body weight QTL 644.20.0017body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
1582208Kidm32Kidney mass QTL 323.90.0018kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17920650523859062Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
1331720Rf43Renal function QTL 432.881kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)171553702528637951Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
1582258Bw76Body weight QTL 764.60.0005body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
1582199Insul5Insulin level QTL 53.40.0119blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)17920650523859062Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17212084322087569Rat
1582241Bw70Body weight QTL 704.60.0003body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
1582245Bw73Body weight QTL 734.60.0004body mass (VT:0001259)body weight (CMO:0000012)17920650523859062Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat

Markers in Region
D17Rat8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21721,782,841 - 21,783,009 (-)MAPPERmRatBN7.2
Rnor_6.01723,522,321 - 23,522,488NCBIRnor6.0
Rnor_5.01725,486,196 - 25,486,363UniSTSRnor5.0
RGSC_v3.41727,618,789 - 27,619,178RGDRGSC3.4
RGSC_v3.41727,619,001 - 27,619,168UniSTSRGSC3.4
RGSC_v3.11727,621,842 - 27,622,009RGD
RH 3.4 Map17268.8UniSTS
RH 3.4 Map17268.8RGD
RH 2.0 Map17185.2RGD
SHRSP x BN Map1713.92RGD
FHH x ACI Map1719.0399RGD
Cytogenetic Map17p12UniSTS
D17Rat59  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81722,087,408 - 22,087,569 (+)Marker Load Pipeline
mRatBN7.21721,881,508 - 21,881,669 (-)MAPPERmRatBN7.2
Rnor_6.01723,422,220 - 23,422,380NCBIRnor6.0
Rnor_5.01725,386,725 - 25,386,885UniSTSRnor5.0
RGSC_v3.41727,724,644 - 27,724,805RGDRGSC3.4
RGSC_v3.41727,724,645 - 27,724,805UniSTSRGSC3.4
Celera1721,577,874 - 21,578,034UniSTS
RGSC_v3.11727,727,486 - 27,727,646RGD
RH 3.4 Map17272.4RGD
RH 3.4 Map17272.4UniSTS
RH 2.0 Map17189.1RGD
SHRSP x BN Map1713.88RGD
FHH x ACI Map1718.9999RGD
Cytogenetic Map17p12UniSTS
D17Rat115  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81722,181,163 - 22,181,410 (+)Marker Load Pipeline
mRatBN7.21721,975,268 - 21,975,515 (-)MAPPERmRatBN7.2
Rnor_6.01723,316,451 - 23,316,697NCBIRnor6.0
Rnor_5.01725,279,973 - 25,280,219UniSTSRnor5.0
RGSC_v3.41727,818,835 - 27,819,082RGDRGSC3.4
RGSC_v3.41727,818,836 - 27,819,082UniSTSRGSC3.4
Celera1721,669,786 - 21,670,010UniSTS
RGSC_v3.11727,821,652 - 27,822,133RGD
SHRSP x BN Map1713.88UniSTS
SHRSP x BN Map1713.88RGD
Cytogenetic Map17p12UniSTS
BF412854  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81722,054,711 - 22,054,881 (+)Marker Load Pipeline
mRatBN7.21721,848,806 - 21,848,976 (-)MAPPERmRatBN7.2
Rnor_6.01723,454,899 - 23,455,068NCBIRnor6.0
Rnor_5.01725,419,397 - 25,419,566UniSTSRnor5.0
RGSC_v3.41727,691,323 - 27,691,492UniSTSRGSC3.4
Celera1721,545,223 - 21,545,393UniSTS
RH 3.4 Map17272.5UniSTS
Cytogenetic Map17p12UniSTS
BE119850  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21721,583,739 - 21,583,890 (-)MAPPERmRatBN7.2
Rnor_6.01723,740,888 - 23,741,038NCBIRnor6.0
Rnor_5.01725,692,963 - 25,693,113UniSTSRnor5.0
Celera1721,280,158 - 21,280,308UniSTS
RH 3.4 Map17266.0UniSTS
Cytogenetic Map17p12UniSTS
RH144105  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21721,880,220 - 21,880,369 (-)MAPPERmRatBN7.2
Rnor_6.01723,423,520 - 23,423,668NCBIRnor6.0
Rnor_5.01725,388,025 - 25,388,173UniSTSRnor5.0
RGSC_v3.41727,723,357 - 27,723,505UniSTSRGSC3.4
Celera1721,576,586 - 21,576,734UniSTS
RH 3.4 Map17272.5UniSTS
Cytogenetic Map17p12UniSTS
AU048286  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21721,687,465 - 21,687,582 (-)MAPPERmRatBN7.2
Rnor_6.01723,622,575 - 23,622,691NCBIRnor6.0
Rnor_5.01725,579,624 - 25,579,740UniSTSRnor5.0
RGSC_v3.41727,512,883 - 27,512,999UniSTSRGSC3.4
Celera1721,384,351 - 21,384,467UniSTS
Cytogenetic Map17p12UniSTS
RH138279  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21721,972,786 - 21,972,955 (-)MAPPERmRatBN7.2
Rnor_6.01723,319,011 - 23,319,179NCBIRnor6.0
Rnor_5.01725,282,533 - 25,282,701UniSTSRnor5.0
RGSC_v3.41727,816,354 - 27,816,522UniSTSRGSC3.4
Celera1721,667,305 - 21,667,473UniSTS
RH 3.4 Map17270.5UniSTS
Cytogenetic Map17p12UniSTS
AI171242  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21721,548,163 - 21,548,274 (-)MAPPERmRatBN7.2
Rnor_6.01723,775,075 - 23,775,185NCBIRnor6.0
Rnor_6.01723,713,164 - 23,713,274NCBIRnor6.0
Rnor_5.01725,727,150 - 25,727,260UniSTSRnor5.0
Rnor_5.01725,667,333 - 25,667,443UniSTSRnor5.0
RGSC_v3.41727,377,838 - 27,377,948UniSTSRGSC3.4
Celera1721,244,601 - 21,244,711UniSTS
RH 3.4 Map17267.9UniSTS
Cytogenetic Map17p12UniSTS
AU048960  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21721,875,337 - 21,875,538 (-)MAPPERmRatBN7.2
Rnor_6.01723,428,351 - 23,428,551NCBIRnor6.0
Rnor_5.01725,392,856 - 25,393,056UniSTSRnor5.0
RGSC_v3.41727,718,474 - 27,718,674UniSTSRGSC3.4
Celera1721,571,702 - 21,571,902UniSTS
Cytogenetic Map17p12UniSTS
Satt227  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21721,581,286 - 21,582,212 (-)MAPPERmRatBN7.2
Rnor_6.01723,742,566 - 23,743,491NCBIRnor6.0
Rnor_5.01725,694,641 - 25,695,566UniSTSRnor5.0
RGSC_v3.41727,409,825 - 27,410,751UniSTSRGSC3.4
Celera1721,277,705 - 21,278,630UniSTS
Cytogenetic Map17p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
sensory system
visual system
7 2 29 96 88 200 137 22 93 56 58 34 34

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001440172 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440174 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440175 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001440183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_214457 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095684 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095685 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276381 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY494977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC098634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000046523   ⟹   ENSRNOP00000043053
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1721,768,662 - 21,986,447 (-)Ensembl
mRatBN7.2 Ensembl1721,562,721 - 21,780,363 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000106668   ⟹   ENSRNOP00000077447
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1721,768,662 - 22,244,586 (-)Ensembl
mRatBN7.2 Ensembl1721,562,721 - 22,039,831 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000107421   ⟹   ENSRNOP00000078261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1721,768,662 - 22,003,229 (-)Ensembl
mRatBN7.2 Ensembl1721,562,721 - 21,797,515 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110352   ⟹   ENSRNOP00000097958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1721,768,662 - 22,244,586 (-)Ensembl
mRatBN7.2 Ensembl1721,562,721 - 22,039,831 (-)Ensembl
RefSeq Acc Id: NM_214457   ⟹   NP_999622
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,506 - 22,245,136 (-)NCBI
mRatBN7.21721,563,565 - 22,039,240 (-)NCBI
Rnor_6.01723,245,423 - 23,761,207 (+)NCBI
Rnor_5.01725,209,368 - 25,713,282 (+)NCBI
RGSC_v3.41727,393,237 - 27,884,127 (-)RGD
Celera1721,259,994 - 21,732,655 (-)RGD
Sequence:
RefSeq Acc Id: XM_039095676   ⟹   XP_038951604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,245,176 (-)NCBI
mRatBN7.21721,560,364 - 22,039,264 (-)NCBI
RefSeq Acc Id: XM_039095677   ⟹   XP_038951605
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,246,227 (-)NCBI
mRatBN7.21721,560,364 - 22,040,166 (-)NCBI
RefSeq Acc Id: XM_039095678   ⟹   XP_038951606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,244,667 (-)NCBI
mRatBN7.21721,560,364 - 22,038,785 (-)NCBI
RefSeq Acc Id: XM_039095679   ⟹   XP_038951607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,003,421 (-)NCBI
mRatBN7.21721,560,364 - 21,797,544 (-)NCBI
RefSeq Acc Id: XM_039095680   ⟹   XP_038951608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 21,986,905 (-)NCBI
mRatBN7.21721,560,364 - 21,781,430 (-)NCBI
RefSeq Acc Id: XM_039095681   ⟹   XP_038951609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,244,729 (-)NCBI
mRatBN7.21721,560,364 - 22,038,774 (-)NCBI
RefSeq Acc Id: XM_039095683   ⟹   XP_038951611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,054,026 (-)NCBI
mRatBN7.21721,560,364 - 21,848,288 (-)NCBI
RefSeq Acc Id: XM_039095684   ⟹   XP_038951612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 21,975,202 (-)NCBI
mRatBN7.21721,560,364 - 21,769,291 (-)NCBI
RefSeq Acc Id: XM_039095685   ⟹   XP_038951613
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 21,986,463 (-)NCBI
mRatBN7.21721,560,364 - 21,781,000 (-)NCBI
RefSeq Acc Id: XM_063276381   ⟹   XP_063132451
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,245,416 (-)NCBI
RefSeq Acc Id: XM_063276382   ⟹   XP_063132452
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,246,062 (-)NCBI
RefSeq Acc Id: XM_063276383   ⟹   XP_063132453
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,003,459 (-)NCBI
RefSeq Acc Id: XM_063276384   ⟹   XP_063132454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81721,769,006 - 22,054,178 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001427101 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427102 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427103 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427104 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427105 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427106 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427107 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427108 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427109 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427110 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427111 (Get FASTA)   NCBI Sequence Viewer  
  NP_001427112 (Get FASTA)   NCBI Sequence Viewer  
  NP_999622 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951604 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951605 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951606 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951607 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951608 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951609 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951611 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951612 (Get FASTA)   NCBI Sequence Viewer  
  XP_038951613 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132451 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132452 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132453 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132454 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH98634 (Get FASTA)   NCBI Sequence Viewer  
  AAS77487 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000043053
  ENSRNOP00000077447
  ENSRNOP00000078261
  ENSRNOP00000097958
GenBank Protein P62024 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_999622   ⟸   NM_214457
- UniProtKB: A0A8I6ATP4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038951605   ⟸   XM_039095677
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038951604   ⟸   XM_039095676
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038951606   ⟸   XM_039095678
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038951609   ⟸   XM_039095681
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038951611   ⟸   XM_039095683
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038951607   ⟸   XM_039095679
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038951608   ⟸   XM_039095680
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038951613   ⟸   XM_039095685
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038951612   ⟸   XM_039095684
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000043053   ⟸   ENSRNOT00000046523
Ensembl Acc Id: ENSRNOP00000097958   ⟸   ENSRNOT00000110352
Ensembl Acc Id: ENSRNOP00000077447   ⟸   ENSRNOT00000106668
Ensembl Acc Id: ENSRNOP00000078261   ⟸   ENSRNOT00000107421
RefSeq Acc Id: XP_063132452   ⟸   XM_063276382
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063132451   ⟸   XM_063276381
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063132454   ⟸   XM_063276384
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063132453   ⟸   XM_063276383
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LNB2-F1-model_v2 AlphaFold F1LNB2 1-415 view protein structure
AF-P62024-F1-model_v2 AlphaFold P62024 1-580 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303187 AgrOrtholog
BioCyc Gene G2FUF-9791 BioCyc
Ensembl Genes ENSRNOG00000014264 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000046523 ENTREZGENE
  ENSRNOT00000106668 ENTREZGENE
  ENSRNOT00000107421 ENTREZGENE
  ENSRNOT00000110352 ENTREZGENE
Gene3D-CATH 6.10.140.1750 UniProtKB/Swiss-Prot
  6.10.140.2130 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7317963 IMAGE-MGC_LOAD
InterPro RPEL_repeat UniProtKB/Swiss-Prot
KEGG Report rno:306844 UniProtKB/Swiss-Prot
MGC_CLONE MGC:112561 IMAGE-MGC_LOAD
NCBI Gene 306844 ENTREZGENE
PANTHER PHOSPHATASE AND ACTIN REGULATOR PHACTR UniProtKB/Swiss-Prot
  PTHR12751:SF6 UniProtKB/Swiss-Prot
Pfam RPEL UniProtKB/Swiss-Prot
PhenoGen Phactr1 PhenoGen
PROSITE RPEL UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000014264 RatGTEx
SMART RPEL UniProtKB/Swiss-Prot
UniProt A0A8I5XW51 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZKJ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATP4 ENTREZGENE, UniProtKB/TrEMBL
  A6J754 ENTREZGENE, UniProtKB/TrEMBL
  F1LNB2 ENTREZGENE, UniProtKB/TrEMBL
  P62024 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q4KMC2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-14 Phactr1  phosphatase and actin regulator 1      Symbol and Name status set to provisional 70820 PROVISIONAL