Ptpn7 (protein tyrosine phosphatase, non-receptor type 7) - Rat Genome Database

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Gene: Ptpn7 (protein tyrosine phosphatase, non-receptor type 7) Rattus norvegicus
Analyze
Symbol: Ptpn7
Name: protein tyrosine phosphatase, non-receptor type 7
RGD ID: 708516
Description: Predicted to enable protein tyrosine phosphatase activity. Predicted to be located in cytoplasmic side of plasma membrane; cytosol; and mitotic spindle. Orthologous to human PTPN7 (protein tyrosine phosphatase non-receptor type 7); PARTICIPATES IN mitogen activated protein kinase signaling pathway; INTERACTS WITH 1,3-dinitrobenzene; 2,3,7,8-tetrachlorodibenzodioxine; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: hematopoietic protein-tyrosine phosphatase; Heptp; Lcptp; protein-tyrosine phosphatase LC-PTP; protein-tyrosine phosphatase, non-receptor type 7; tyrosine-protein phosphatase non-receptor type 7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,122,679 - 49,136,096 (+)NCBIGRCr8
mRatBN7.21346,570,904 - 46,584,048 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,571,712 - 46,583,308 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,178,503 - 49,190,055 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01350,466,576 - 50,478,127 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,732,661 - 47,744,208 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,958,023 - 51,971,431 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,958,834 - 51,972,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,009,427 - 57,023,148 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,094,119 - 48,105,707 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,108,161 - 48,119,750 (+)NCBI
Celera1346,897,613 - 46,908,578 (+)NCBICelera
Cytogenetic Map13q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Aggregation of IgE receptors in rat basophilic leukemia 2H3 cells induces tyrosine phosphorylation of the cytosolic protein-tyrosine phosphatase HePTP. Swieter M, etal., J Biol Chem 1995 Sep 15;270(37):21902-6.
Additional References at PubMed
PMID:10940933   PMID:11564869   PMID:14613483  


Genomics

Comparative Map Data
Ptpn7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81349,122,679 - 49,136,096 (+)NCBIGRCr8
mRatBN7.21346,570,904 - 46,584,048 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1346,571,712 - 46,583,308 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1349,178,503 - 49,190,055 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01350,466,576 - 50,478,127 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01347,732,661 - 47,744,208 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01351,958,023 - 51,971,431 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1351,958,834 - 51,972,777 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01357,009,427 - 57,023,148 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41348,094,119 - 48,105,707 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11348,108,161 - 48,119,750 (+)NCBI
Celera1346,897,613 - 46,908,578 (+)NCBICelera
Cytogenetic Map13q13NCBI
PTPN7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381202,147,013 - 202,161,588 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1202,147,013 - 202,161,588 (-)EnsemblGRCh38hg38GRCh38
GRCh371202,116,141 - 202,130,716 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361200,382,766 - 200,396,374 (-)NCBINCBI36Build 36hg18NCBI36
Celera1175,240,001 - 175,253,609 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1173,281,692 - 173,296,269 (-)NCBIHuRef
CHM1_11203,538,425 - 203,553,000 (-)NCBICHM1_1
T2T-CHM13v2.01201,404,580 - 201,419,169 (-)NCBIT2T-CHM13v2.0
Ptpn7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391135,059,577 - 135,073,064 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1135,060,438 - 135,073,055 (+)EnsemblGRCm39 Ensembl
GRCm381135,131,838 - 135,145,328 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1135,132,700 - 135,145,317 (+)EnsemblGRCm38mm10GRCm38
MGSCv371137,029,302 - 137,041,897 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361136,949,136 - 136,961,731 (+)NCBIMGSCv36mm8
Celera1137,759,680 - 137,772,179 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map158.24NCBI
Ptpn7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540638,232,589 - 38,250,195 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540638,233,409 - 38,249,940 (-)NCBIChiLan1.0ChiLan1.0
PTPN7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2147,220,186 - 47,234,828 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1147,184,863 - 47,199,505 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01177,744,963 - 177,759,611 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11182,047,418 - 182,061,889 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1182,049,084 - 182,061,151 (-)Ensemblpanpan1.1panPan2
PTPN7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.17859,124 - 869,168 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl7859,214 - 869,183 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha7911,497 - 921,564 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.07867,172 - 877,245 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl7867,266 - 877,241 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.17855,561 - 865,624 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.07963,852 - 973,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.07987,836 - 997,900 (+)NCBIUU_Cfam_GSD_1.0
Ptpn7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934473,146,132 - 73,158,479 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365672,382,931 - 2,391,542 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365672,381,519 - 2,392,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PTPN7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1024,325,293 - 24,336,419 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11024,325,289 - 24,336,426 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21028,744,132 - 28,748,147 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PTPN7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12527,243,907 - 27,258,088 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605528,023,104 - 28,038,993 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ptpn7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248078,575,371 - 8,593,552 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248078,575,414 - 8,593,063 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ptpn7
25 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:316
Count of miRNA genes:197
Interacting mature miRNAs:229
Transcripts:ENSRNOT00000007833
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131101056920Rat
1354666Bp244Blood pressure QTL 2444.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131101056920Rat
1581554Pur11Proteinuria QTL 11urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581573Uae36Urinary albumin excretion QTL 36urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)13599483377046787Rat
1581570Eae17Experimental allergic encephalomyelitis QTL 174.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)138897350101631289Rat
7411662Foco29Food consumption QTL 2920.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)13931346554313465Rat
9589141Insul28Insulin level QTL 2810.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)13931346554313465Rat
2317040Aia21Adjuvant induced arthritis QTL 212.75joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
2317046Aia8Adjuvant induced arthritis QTL 83.9700000286102295joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)13983154154831541Rat
631645Bp121Blood pressure QTL 1213.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)131491565559915655Rat
9589164Gluco66Glucose level QTL 666.670.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)131515872260158722Rat
1331784Bp222Blood pressure QTL 2222.944arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)131769443653050594Rat
7207885Glom27Glomerulus QTL 273.9kidney glomerulus integrity trait (VT:0010546)kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)1320605871101339738Rat
61391Bp5Blood pressure QTL 55.6arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)132230187567301875Rat
70170Eae14Experimental allergic encephalomyelitis QTL 140.0024nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)132320344868203448Rat
6893338Cm76Cardiac mass QTL 7600.99heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)132369296968692969Rat
1558644Cm45Cardiac mass QTL 453.60.002heart mass (VT:0007028)heart wet weight (CMO:0000069)132369296968692969Rat
1354621Rf47Renal function QTL 473.7kidney renin amount (VT:0010559)kidney renin level (CMO:0002166)1330395351101056920Rat
2301962Cm72Cardiac mass QTL 724.12heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)133124133158363171Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133124133193395974Rat
70181BpQTLcluster11Blood pressure QTL cluster 116.922arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)133124133193395974Rat
2303563Bw89Body weight QTL 896body mass (VT:0001259)body weight (CMO:0000012)133228447177284471Rat
61340Bp25Blood pressure QTL 254.20.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133453521879535218Rat
12879477Bp401Blood pressure QTL 401arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)133726209282262092Rat
61349Bp31Blood pressure QTL 315.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
70220Bp55Blood pressure QTL 555.75arterial blood pressure trait (VT:2000000)blood pressure measurement (CMO:0000003)133737450982374509Rat
4889861Pur29Proteinuria QTL 2913.80.005urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)133741558480753406Rat
1331750Bp220Blood pressure QTL 2202.98arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)133741558482415584Rat
1549897Stresp12Stress response QTL 123.35stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)133843340883433408Rat
619615Bp80Blood pressure QTL 800.0354arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)133975454484754544Rat
4145117Mcs27Mammary carcinoma susceptibility QTL 270.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)134343790447841255Rat
6893344Cm79Cardiac mass QTL 791.50.04heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)134372077062022792Rat
12879444Bp397Blood pressure QTL 397arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134504940490049404Rat
12879472Bp399Blood pressure QTL 399arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134522835847841255Rat
12879471Bp398Blood pressure QTL 398arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134551471990514719Rat
12879441Bp396Blood pressure QTL 396arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)134569998390699983Rat
1298066Bp159Blood pressure QTL 1590.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134608804691088046Rat
71119Thym2Thymus enlargement QTL 23.8thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)134619797684753113Rat

Markers in Region
BE112734  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21346,583,132 - 46,583,306 (+)MAPPERmRatBN7.2
Rnor_6.01351,970,264 - 51,970,437NCBIRnor6.0
Rnor_5.01357,021,974 - 57,022,147UniSTSRnor5.0
RGSC_v3.41348,105,532 - 48,105,705UniSTSRGSC3.4
Celera1346,908,403 - 46,908,576UniSTS
RH 3.4 Map13168.9UniSTS
Cytogenetic Map13q13UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 22 14 19 14 1
Low 1 39 34 26 26 7 9 52 35 41 10 7
Below cutoff 4 1 1 1 1 2 22 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000007833   ⟹   ENSRNOP00000007833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1346,571,768 - 46,583,308 (+)Ensembl
Rnor_6.0 Ensembl1351,958,834 - 51,972,777 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114746   ⟹   ENSRNOP00000084393
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1346,571,712 - 46,583,308 (+)Ensembl
RefSeq Acc Id: NM_145683   ⟹   NP_663716
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,123,558 - 49,135,096 (+)NCBI
mRatBN7.21346,571,768 - 46,583,308 (+)NCBI
Rnor_6.01351,958,877 - 51,970,439 (+)NCBI
Rnor_5.01357,009,427 - 57,023,148 (+)NCBI
RGSC_v3.41348,094,119 - 48,105,707 (+)RGD
Celera1346,897,613 - 46,908,578 (+)RGD
Sequence:
RefSeq Acc Id: XM_006249820   ⟹   XP_006249882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,124,028 - 49,136,096 (+)NCBI
mRatBN7.21346,572,239 - 46,584,048 (+)NCBI
Rnor_6.01351,958,955 - 51,971,431 (+)NCBI
Rnor_5.01357,009,427 - 57,023,148 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249821   ⟹   XP_006249883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81349,122,679 - 49,136,096 (+)NCBI
mRatBN7.21346,570,904 - 46,584,048 (+)NCBI
Rnor_6.01351,958,023 - 51,971,431 (+)NCBI
Rnor_5.01357,009,427 - 57,023,148 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_663716   ⟸   NM_145683
- UniProtKB: P49445 (UniProtKB/Swiss-Prot),   A6ICD8 (UniProtKB/TrEMBL),   A6ICE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249883   ⟸   XM_006249821
- Peptide Label: isoform X2
- UniProtKB: P49445 (UniProtKB/Swiss-Prot),   A6ICD8 (UniProtKB/TrEMBL),   A6ICE0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249882   ⟸   XM_006249820
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000007833   ⟸   ENSRNOT00000007833
RefSeq Acc Id: ENSRNOP00000084393   ⟸   ENSRNOT00000114746
Protein Domains
Tyrosine specific protein phosphatases   Tyrosine-protein phosphatase

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P49445-F1-model_v2 AlphaFold P49445 1-359 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698838
Promoter ID:EPDNEW_R9362
Type:multiple initiation site
Name:Ptpn7_1
Description:protein tyrosine phosphatase, non-receptor type 7
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01351,958,877 - 51,958,937EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708516 AgrOrtholog
BioCyc Gene G2FUF-18218 BioCyc
Ensembl Genes ENSRNOG00000005807 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055021781 UniProtKB/Swiss-Prot
  ENSRNOG00060015102 UniProtKB/Swiss-Prot
  ENSRNOG00065019361 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000007833 ENTREZGENE
  ENSRNOT00000007833.4 UniProtKB/Swiss-Prot
  ENSRNOT00000114746.1 UniProtKB/TrEMBL
  ENSRNOT00055037320 UniProtKB/Swiss-Prot
  ENSRNOT00060025886 UniProtKB/Swiss-Prot
  ENSRNOT00065032584 UniProtKB/Swiss-Prot
Gene3D-CATH 3.90.190.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Prot-tyrosine_phosphatase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTP_cat UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
  Tyr_Pase_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_cat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tyr_Pase_dom UniProtKB/TrEMBL
  Tyr_Pase_KIM-con UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_dom UniProtKB/Swiss-Prot
KEGG Report rno:246781 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 246781 ENTREZGENE
PANTHER PROTEIN-TYROSINE-PHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR46198 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Y_phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ptpn7 PhenoGen
PRINTS KIMPTPASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PRTYPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TYR_PHOSPHATASE_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TYR_PHOSPHATASE_PTP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005807 RatGTEx
  ENSRNOG00055021781 RatGTEx
  ENSRNOG00060015102 RatGTEx
  ENSRNOG00065019361 RatGTEx
SMART PTPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTPc_motif UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF52799 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5ZXS3_RAT UniProtKB/TrEMBL
  A6ICD8 ENTREZGENE, UniProtKB/TrEMBL
  A6ICE0 ENTREZGENE, UniProtKB/TrEMBL
  A6ICE1_RAT UniProtKB/TrEMBL
  P49445 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Ptpn7  protein tyrosine phosphatase, non-receptor type 7  Lcptp  protein-tyrosine phosphatase, non-receptor type 7  Symbol and Name updated 1299863 APPROVED

RGD Curation Notes
Note Type Note Reference