Rp1 (RP1, axonemal microtubule associated) - Rat Genome Database

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Gene: Rp1 (RP1, axonemal microtubule associated) Rattus norvegicus
Analyze
Symbol: Rp1
Name: RP1, axonemal microtubule associated
RGD ID: 1596713
Description: Predicted to enable microtubule binding activity. Predicted to be involved in axoneme assembly; photoreceptor cell development; and photoreceptor cell maintenance. Predicted to act upstream of or within cellular response to light stimulus; positive regulation of non-motile cilium assembly; and retina morphogenesis in camera-type eye. Predicted to be located in ciliary tip; photoreceptor cell cilium; and photoreceptor inner segment. Predicted to be part of microtubule associated complex. Predicted to be active in axoneme. Human ortholog(s) of this gene implicated in retinitis pigmentosa 1. Orthologous to human RP1 (RP1 axonemal microtubule associated); PARTICIPATES IN retinitis pigmentosa pathway; INTERACTS WITH aflatoxin B1; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: lipoxygenase homology domain-containing protein 1; LOC102552996; LOC362480; LOC681377; oxygen-regulated protein 1; rCG30348-like; retinitis pigmentosa 1; retinitis pigmentosa 1 (autosomal dominant); retinitis pigmentosa 1 (human); retinitis pigmentosa 1 homolog; retinitis pigmentosa 1 homolog (human); RGD1560182; Rp1h; similar to lipoxygenase homology domains 1; similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog); uncharacterized LOC102552996
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,918,728 - 20,380,811 (+)NCBIGRCr8
mRatBN7.2515,121,104 - 15,582,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl515,121,133 - 15,579,363 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx517,359,324 - 17,375,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,956,553 - 18,972,879 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0518,693,943 - 18,710,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0515,005,028 - 15,060,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl515,043,955 - 15,060,508 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0519,789,094 - 19,844,587 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4515,393,101 - 15,401,890 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera514,541,674 - 14,558,002 (+)NCBICelera
Cytogenetic Map5q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genes and mutations causing retinitis pigmentosa. Daiger SP, etal., Clin Genet. 2013 Aug;84(2):132-41. doi: 10.1111/cge.12203. Epub 2013 Jun 19.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:11767049   PMID:11773008   PMID:12651948   PMID:14507858   PMID:15269252   PMID:16126734   PMID:16869982   PMID:20236041   PMID:20368623   PMID:20592197   PMID:21052544  
PMID:21148103   PMID:24833722   PMID:29899041  


Genomics

Comparative Map Data
Rp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,918,728 - 20,380,811 (+)NCBIGRCr8
mRatBN7.2515,121,104 - 15,582,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl515,121,133 - 15,579,363 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx517,359,324 - 17,375,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,956,553 - 18,972,879 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0518,693,943 - 18,710,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0515,005,028 - 15,060,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl515,043,955 - 15,060,508 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0519,789,094 - 19,844,587 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4515,393,101 - 15,401,890 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera514,541,674 - 14,558,002 (+)NCBICelera
Cytogenetic Map5q12NCBI
RP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38854,559,185 - 54,871,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl854,509,422 - 54,871,720 (+)EnsemblGRCh38hg38GRCh38
GRCh37855,471,745 - 55,783,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36855,691,180 - 55,705,947 (+)NCBINCBI36Build 36hg18NCBI36
Build 34855,691,179 - 55,705,947NCBI
Celera851,519,220 - 51,533,987 (+)NCBICelera
Cytogenetic Map8q11.23-q12.1NCBI
HuRef850,996,864 - 51,011,630 (+)NCBIHuRef
CHM1_1855,580,233 - 55,594,998 (+)NCBICHM1_1
T2T-CHM13v2.0854,886,748 - 55,248,781 (+)NCBIT2T-CHM13v2.0
Rp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914,185,896 - 4,479,508 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14,069,780 - 4,479,464 (-)EnsemblGRCm39 Ensembl
GRCm3814,115,673 - 4,409,266 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13,999,557 - 4,409,241 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714,334,224 - 4,350,473 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614,334,224 - 4,350,473 (-)NCBIMGSCv36mm8
Celera14,363,200 - 4,379,450 (-)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.65NCBI
Rp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545413,781,556 - 14,082,310 (+)NCBIChiLan1.0ChiLan1.0
RP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2770,191,285 - 70,524,500 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1845,916,098 - 46,248,935 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0850,979,412 - 51,311,431 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1848,454,096 - 48,617,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl848,419,033 - 48,583,879 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl848,419,033 - 48,583,879 (+)NCBIpanpan1.1panPan2
RP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1296,079,519 - 6,136,009 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl296,079,377 - 6,136,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha296,435,871 - 6,446,199 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0296,193,857 - 6,204,194 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl296,147,680 - 6,204,194 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1296,139,004 - 6,149,329 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0296,345,098 - 6,355,440 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0296,523,726 - 6,534,052 (+)NCBIUU_Cfam_GSD_1.0
Rp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530373,123,919 - 73,388,680 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364961,524,123 - 1,583,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl476,724,604 - 76,734,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1476,724,604 - 76,730,264 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1850,743,699 - 50,837,089 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl850,627,957 - 50,685,911 (+)NCBIChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl850,627,957 - 50,685,911 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603990,878,192 - 91,240,016 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247351,093,929 - 1,179,265 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247351,129,333 - 1,179,387 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rp1
4111 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:251
Count of miRNA genes:165
Interacting mature miRNAs:183
Transcripts:ENSRNOT00000047093
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
61462Niddm10Non-insulin dependent diabetes mellitus QTL 103.90.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)5511215947171491Rat
634305Mamtr1Mammary tumor resistance QTL 10.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)512789751113558310Rat
631827Alc4Alcohol consumption QTL 43.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)5818750118616199Rat
1331756Rf34Renal function QTL 344.16275kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)5190450412Rat
1331771Rf35Renal function QTL 354.36965kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)572947086724018Rat
1300117Hrtrt8Heart rate QTL 83.49heart pumping trait (VT:2000009)heart rate (CMO:0000002)5384401847869213Rat
1641903Alcrsp3Alcohol response QTL 3response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)51268928557689285Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2293666Bmd38Bone mineral density QTL 384.4femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)5894822853948228Rat
2312562Pur18Proteinuria QTL 182.60.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)5213896532656739Rat
2313085Bss59Bone structure and strength QTL 592.90.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)5384401826141981Rat
8662454Vetf3Vascular elastic tissue fragility QTL 327.4artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)5228222669540447Rat
7394712Emca13Estrogen-induced mammary cancer QTL 13mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5982326699753708Rat

Markers in Region
RH134701  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2515,175,838 - 15,176,049 (+)MAPPERmRatBN7.2
Rnor_6.0515,060,176 - 15,060,386NCBIRnor6.0
Rnor_5.0519,844,255 - 19,844,465UniSTSRnor5.0
RGSC_v3.4515,401,968 - 15,402,178UniSTSRGSC3.4
Celera514,557,670 - 14,557,880UniSTS
Cytogenetic Map5q12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system appendage
High
Medium 3
Low 21 6 6 6 7 8
Below cutoff 6 13 13 1 13 7 7 28 19 7

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001195676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008763558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110771 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039110772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288396 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288398 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063288399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AI577591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI713024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000047093   ⟹   ENSRNOP00000040735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl515,159,859 - 15,176,171 (+)Ensembl
Rnor_6.0 Ensembl515,043,955 - 15,060,508 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108094   ⟹   ENSRNOP00000094773
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl515,121,133 - 15,579,363 (+)Ensembl
RefSeq Acc Id: NM_001195676   ⟹   NP_001182605
RefSeq Status: REVIEWED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,957,570 - 19,973,788 (+)NCBI
mRatBN7.2515,159,948 - 15,176,164 (+)NCBI
Rnor_6.0515,043,955 - 15,060,508 (+)NCBI
Rnor_5.0519,789,094 - 19,844,587 (+)NCBI
Celera514,541,674 - 14,558,002 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008763558   ⟹   XP_008761780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,728 - 19,973,788 (+)NCBI
mRatBN7.2515,121,104 - 15,176,164 (+)NCBI
Rnor_6.0515,005,028 - 15,060,508 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593623   ⟹   XP_017449112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,728 - 19,973,788 (+)NCBI
mRatBN7.2515,121,104 - 15,176,164 (+)NCBI
Rnor_6.0515,005,028 - 15,060,508 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039110769   ⟹   XP_038966697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,752 - 20,380,811 (+)NCBI
mRatBN7.2515,121,129 - 15,582,363 (+)NCBI
RefSeq Acc Id: XM_039110770   ⟹   XP_038966698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,752 - 20,380,811 (+)NCBI
mRatBN7.2515,121,129 - 15,582,363 (+)NCBI
RefSeq Acc Id: XM_039110771   ⟹   XP_038966699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,753 - 20,251,033 (+)NCBI
mRatBN7.2515,121,130 - 15,453,411 (+)NCBI
RefSeq Acc Id: XM_039110772   ⟹   XP_038966700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,752 - 20,138,667 (+)NCBI
mRatBN7.2515,121,130 - 15,341,043 (+)NCBI
RefSeq Acc Id: XM_063288395   ⟹   XP_063144465
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,743 - 20,380,811 (+)NCBI
RefSeq Acc Id: XM_063288396   ⟹   XP_063144466
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,752 - 20,380,811 (+)NCBI
RefSeq Acc Id: XM_063288397   ⟹   XP_063144467
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,743 - 20,251,033 (+)NCBI
RefSeq Acc Id: XM_063288398   ⟹   XP_063144468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,752 - 20,150,322 (+)NCBI
RefSeq Acc Id: XM_063288399   ⟹   XP_063144469
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8519,918,751 - 20,072,474 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001182605   ⟸   NM_001195676
- UniProtKB: D4ABP8 (UniProtKB/TrEMBL),   A6JFK0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008761780   ⟸   XM_008763558
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449112   ⟸   XM_017593623
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000040735   ⟸   ENSRNOT00000047093
RefSeq Acc Id: XP_038966697   ⟸   XM_039110769
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038966698   ⟸   XM_039110770
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038966699   ⟸   XM_039110771
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038966700   ⟸   XM_039110772
- Peptide Label: isoform X10
RefSeq Acc Id: ENSRNOP00000094773   ⟸   ENSRNOT00000108094
RefSeq Acc Id: XP_063144465   ⟸   XM_063288395
- Peptide Label: isoform X5
- UniProtKB: A0A8I6GLB3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063144467   ⟸   XM_063288397
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063144469   ⟸   XM_063288399
- Peptide Label: isoform X11
RefSeq Acc Id: XP_063144466   ⟸   XM_063288396
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144468   ⟸   XM_063288398
- Peptide Label: isoform X9
Protein Domains
Doublecortin   PLAT

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABP8-F1-model_v2 AlphaFold D4ABP8 1-2125 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596713 AgrOrtholog
BioCyc Gene G2FUF-42144 BioCyc
Ensembl Genes ENSRNOG00000008807 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047093 ENTREZGENE
  ENSRNOT00000047093.5 UniProtKB/TrEMBL
  ENSRNOT00000108094.1 UniProtKB/TrEMBL
Gene3D-CATH 2.80.10.50 UniProtKB/TrEMBL
  3.10.20.230 UniProtKB/TrEMBL
  Catalase core domain UniProtKB/TrEMBL
  PLAT/LH2 domain UniProtKB/TrEMBL
InterPro DCX UniProtKB/TrEMBL
  Doublecortin_dom_sf UniProtKB/TrEMBL
  IL1/FGF UniProtKB/TrEMBL
  PLAT/LH2_dom UniProtKB/TrEMBL
  PLAT/LH2_dom_sf UniProtKB/TrEMBL
  RP1/RP1L1 UniProtKB/TrEMBL
KEGG Report rno:681377 UniProtKB/TrEMBL
NCBI Gene 681377 ENTREZGENE
PANTHER LIPOXYGENASE HOMOLOGY DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  OXYGEN-REGULATED PROTEIN 1 UniProtKB/TrEMBL
  PROTEIN CBG12474 UniProtKB/TrEMBL
  PTHR23005 UniProtKB/TrEMBL
Pfam DCX UniProtKB/TrEMBL
  PLAT UniProtKB/TrEMBL
PhenoGen Rp1 PhenoGen
PROSITE PLAT UniProtKB/TrEMBL
  PS50309 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000008807 RatGTEx
SMART DCX UniProtKB/TrEMBL
  LH2 UniProtKB/TrEMBL
Superfamily-SCOP SSF49723 UniProtKB/TrEMBL
  SSF50353 UniProtKB/TrEMBL
  SSF89837 UniProtKB/TrEMBL
UniProt A0A8I6GLB3 ENTREZGENE, UniProtKB/TrEMBL
  A6JFK0 ENTREZGENE, UniProtKB/TrEMBL
  D4ABP8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Rp1  RP1, axonemal microtubule associated  LOC102552996  uncharacterized LOC102552996  Data merged from RGD:7560640 737654 PROVISIONAL
2017-03-27 Rp1  RP1, axonemal microtubule associated  Rp1  retinitis pigmentosa 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-07-29 LOC102552996  uncharacterized LOC102552996  RGD1560182  similar to lipoxygenase homology domains 1  Data merged from RGD:1560182 737654 PROVISIONAL
2015-03-16 Rp1  retinitis pigmentosa 1  Rp1  retinitis pigmentosa 1 (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-17 LOC102552996  uncharacterized LOC102552996      Symbol and Name status set to provisional 70820 PROVISIONAL
2009-12-15 Rp1  retinitis pigmentosa 1 (human)  Rp1h  retinitis pigmentosa 1 homolog (human)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1560182  similar to lipoxygenase homology domains 1   RGD1560182_predicted  similar to lipoxygenase homology domains 1 (predicted)  'predicted' is removed 2292626 APPROVED
2008-03-14 Rp1h  retinitis pigmentosa 1 homolog (human)  Rp1h  retinitis pigmentosa 1 (autosomal dominant)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-11 Rp1h  retinitis pigmentosa 1 (autosomal dominant)  Rp1  retinitis pigmentosa 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Rp1  retinitis pigmentosa 1  LOC681377  similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC681377  similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)  LOC684060  similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)  Data merged from RGD:1595186 1643240 APPROVED
2006-11-20 LOC681377  similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684060  similar to Oxygen-regulated protein 1 (Retinitis pigmentosa RP1 protein homolog)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1560182_predicted  similar to lipoxygenase homology domains 1 (predicted)  LOC362480  similar to lipoxygenase homology domains 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362480  similar to lipoxygenase homology domains 1      Symbol and Name status set to provisional 70820 PROVISIONAL