Rp1 (RP1 axonemal microtubule associated) - Rat Genome Database

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Gene: Rp1 (RP1 axonemal microtubule associated) Ictidomys tridecemlineatus
Analyze
Symbol: Rp1
Name: RP1 axonemal microtubule associated
RGD ID: 13103150
Description: ENCODES a protein that exhibits microtubule binding (ortholog); INVOLVED IN axoneme assembly (ortholog); cellular response to light stimulus (ortholog); photoreceptor cell development (ortholog); PARTICIPATES IN retinitis pigmentosa pathway; ASSOCIATED WITH breast ductal carcinoma (ortholog); fundus dystrophy (ortholog); genetic disease (ortholog); FOUND IN axoneme (ortholog); ciliary tip (ortholog); cilium (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lipoxygenase homology domain-containing protein 1-like; LOC110597895; LOC110597896; LOC110597897; oxygen-regulated protein 1; retinitis pigmentosa 1 (autosomal dominant); RP1, axonemal microtubule associated; uncharacterized LOC110597896; uncharacterized protein LOC110597896
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530373,123,919 - 73,388,680 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364961,524,123 - 1,583,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Rp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530373,123,919 - 73,388,680 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364961,524,123 - 1,583,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38854,559,185 - 54,871,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl854,509,422 - 54,871,720 (+)EnsemblGRCh38hg38GRCh38
GRCh37855,471,745 - 55,783,794 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36855,691,180 - 55,705,947 (+)NCBINCBI36Build 36hg18NCBI36
Build 34855,691,179 - 55,705,947NCBI
Celera851,519,220 - 51,533,987 (+)NCBICelera
Cytogenetic Map8q11.23-q12.1NCBI
HuRef850,996,864 - 51,011,630 (+)NCBIHuRef
CHM1_1855,580,233 - 55,594,998 (+)NCBICHM1_1
T2T-CHM13v2.0854,886,748 - 55,248,781 (+)NCBIT2T-CHM13v2.0
Rp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3914,185,896 - 4,479,508 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl14,069,780 - 4,479,464 (-)EnsemblGRCm39 Ensembl
GRCm3814,115,673 - 4,409,266 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13,999,557 - 4,409,241 (-)EnsemblGRCm38mm10GRCm38
MGSCv3714,334,224 - 4,350,473 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3614,334,224 - 4,350,473 (-)NCBIMGSCv36mm8
Celera14,363,200 - 4,379,450 (-)NCBICelera
Cytogenetic Map1A1NCBI
cM Map11.65NCBI
Rp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8519,918,728 - 20,380,811 (+)NCBIGRCr8
mRatBN7.2515,121,104 - 15,582,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl515,121,133 - 15,579,363 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx517,359,324 - 17,375,651 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0518,956,553 - 18,972,879 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0518,693,943 - 18,710,270 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0515,005,028 - 15,060,508 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl515,043,955 - 15,060,508 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0519,789,094 - 19,844,587 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4515,393,101 - 15,401,890 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera514,541,674 - 14,558,002 (+)NCBICelera
Cytogenetic Map5q12NCBI
Rp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545413,781,556 - 14,082,310 (+)NCBIChiLan1.0ChiLan1.0
RP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2770,191,285 - 70,524,500 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1845,916,098 - 46,248,935 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0850,979,412 - 51,311,431 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1848,454,096 - 48,617,283 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl848,419,033 - 48,583,879 (+)Ensemblpanpan1.1panPan2
PanPan1.1 Ensembl848,419,033 - 48,583,879 (+)NCBIpanpan1.1panPan2
RP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1296,079,519 - 6,136,009 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl296,079,377 - 6,136,009 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha296,435,871 - 6,446,199 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0296,193,857 - 6,204,194 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl296,147,680 - 6,204,194 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1296,139,004 - 6,149,329 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0296,345,098 - 6,355,440 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0296,523,726 - 6,534,052 (+)NCBIUU_Cfam_GSD_1.0
RP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl476,724,604 - 76,734,610 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1476,724,604 - 76,730,264 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1850,743,699 - 50,837,089 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl850,627,957 - 50,685,911 (+)NCBIChlSab1.1ChlSab1.1 EnsemblchlSab2
ChlSab1.1 Ensembl850,627,957 - 50,685,911 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603990,878,192 - 91,240,016 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247351,093,929 - 1,179,265 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247351,129,333 - 1,179,387 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040268105   ⟹   XP_040124039
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530373,123,919 - 73,388,680 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040124039 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3274155 (Get FASTA)   NCBI Sequence Viewer  
  KAG3274156 (Get FASTA)   NCBI Sequence Viewer  
  KAG3274157 (Get FASTA)   NCBI Sequence Viewer  
  KAG3274158 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040124039   ⟸   XM_040268105


Additional Information

Database Acc Id Source(s)
NCBI Gene LOC110597897 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 Rp1  RP1 axonemal microtubule associated  LOC110597897  lipoxygenase homology domain-containing protein 1-like  Symbol and/or name change 5135510 APPROVED
2021-03-25 LOC110597897  lipoxygenase homology domain-containing protein 1-like  LOC110597895  lipoxygenase homology domain-containing protein 1-like  Data merged from RGD:13201891 737654 PROVISIONAL
2021-03-25 LOC110597897  lipoxygenase homology domain-containing protein 1-like  Rp1  RP1 axonemal microtubule associated  Data merged from RGD:12716789 737654 PROVISIONAL
2021-03-25 LOC110597897  lipoxygenase homology domain-containing protein 1-like  LOC110597896  uncharacterized LOC110597896  Data merged from RGD:13164168 737654 PROVISIONAL
2019-01-29 Rp1  RP1 axonemal microtubule associated    RP1, axonemal microtubule associated  Symbol and/or name change 5135510 APPROVED