Lamp3 (lysosomal-associated membrane protein 3) - Rat Genome Database

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Gene: Lamp3 (lysosomal-associated membrane protein 3) Rattus norvegicus
Analyze
Symbol: Lamp3
Name: lysosomal-associated membrane protein 3
RGD ID: 1307928
Description: Predicted to be involved in several processes, including negative regulation of proteasomal protein catabolic process; regulation of autophagy; and response to interferon-alpha. Located in alveolar lamellar body membrane. Orthologous to human LAMP3 (lysosomal associated membrane protein 3); INTERACTS WITH alpha-Zearalanol; bisphenol A; chlorpyrifos.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LAMP-3; LOC303801; lysosome-associated membrane glycoprotein 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,657,817 - 94,726,451 (+)NCBIGRCr8
mRatBN7.21181,153,491 - 81,224,643 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,193,649 - 81,221,784 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,931,203 - 89,959,347 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,584,571 - 82,612,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,645,697 - 81,673,835 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01184,930,965 - 85,000,694 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,972,132 - 85,000,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,990,643 - 88,058,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41183,449,326 - 83,476,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11183,507,246 - 83,534,539 (+)NCBI
Celera1180,028,176 - 80,056,319 (+)NCBICelera
Cytogenetic Map11q23NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
2-palmitoylglycerol  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-dichlorobiphenyl  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-nonylphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
8-Br-cAMP  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
antirheumatic drug  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
bicalutamide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
Butylbenzyl phthalate  (ISO)
cadmium dichloride  (ISO)
cadmium sulfate  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (ISO)
ciguatoxin CTX1B  (ISO)
cisplatin  (ISO)
cobalt atom  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
daidzein  (ISO)
dexamethasone  (ISO)
diazinon  (EXP)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
hydrogen peroxide  (ISO)
Lasiocarpine  (ISO)
lead(II) chloride  (ISO)
lipopolysaccharide  (ISO)
lucanthone  (ISO)
methyl methanesulfonate  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nitrofen  (EXP)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
pentanal  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenylmercury acetate  (ISO)
propanal  (ISO)
protein kinase inhibitor  (ISO)
prothioconazole  (ISO)
rac-lactic acid  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (ISO)
sunitinib  (ISO)
testosterone  (EXP)
thifluzamide  (ISO)
titanium dioxide  (ISO)
tributylstannane  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
Tungsten carbide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Plasma membrane trafficking in alveolar type II cells. Albrecht S, etal., Cell Physiol Biochem. 2010;25(1):81-90. doi: 10.1159/000272053. Epub 2009 Dec 22.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12938238   PMID:14982840   PMID:15489334   PMID:21810281   PMID:23395172   PMID:23651994   PMID:25681212  


Genomics

Comparative Map Data
Lamp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81194,657,817 - 94,726,451 (+)NCBIGRCr8
mRatBN7.21181,153,491 - 81,224,643 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1181,193,649 - 81,221,784 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1189,931,203 - 89,959,347 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01182,584,571 - 82,612,718 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01181,645,697 - 81,673,835 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01184,930,965 - 85,000,694 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1184,972,132 - 85,000,681 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01187,990,643 - 88,058,602 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41183,449,326 - 83,476,622 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11183,507,246 - 83,534,539 (+)NCBI
Celera1180,028,176 - 80,056,319 (+)NCBICelera
Cytogenetic Map11q23NCBI
LAMP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383183,122,215 - 183,163,813 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3183,122,215 - 183,163,839 (-)EnsemblGRCh38hg38GRCh38
GRCh373182,840,003 - 182,880,522 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363184,322,697 - 184,363,361 (-)NCBINCBI36Build 36hg18NCBI36
Build 343184,322,705 - 184,363,325NCBI
Celera3181,274,880 - 181,315,525 (-)NCBICelera
Cytogenetic Map3q27.1NCBI
HuRef3180,244,791 - 180,285,442 (-)NCBIHuRef
CHM1_13182,802,887 - 182,843,546 (-)NCBICHM1_1
T2T-CHM13v2.03185,928,423 - 185,968,931 (-)NCBIT2T-CHM13v2.0
Lamp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391619,472,131 - 19,525,115 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1619,472,128 - 19,525,125 (-)EnsemblGRCm39 Ensembl
GRCm381619,653,381 - 19,706,365 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1619,653,378 - 19,706,375 (-)EnsemblGRCm38mm10GRCm38
MGSCv371619,653,474 - 19,706,458 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361619,566,949 - 19,619,879 (-)NCBIMGSCv36mm8
Celera1620,221,734 - 20,274,680 (-)NCBICelera
Cytogenetic Map16A3NCBI
cM Map1612.17NCBI
Lamp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542024,155,793 - 24,185,366 (+)NCBIChiLan1.0ChiLan1.0
LAMP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22180,987,981 - 181,030,593 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13180,992,703 - 181,035,309 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03180,152,363 - 180,193,223 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13188,324,139 - 188,363,448 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3188,324,660 - 188,363,268 (-)Ensemblpanpan1.1panPan2
LAMP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13416,092,172 - 16,126,563 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3420,179,722 - 20,215,048 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03415,998,428 - 16,033,717 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3415,998,249 - 16,048,623 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13416,039,288 - 16,074,827 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03416,022,905 - 16,058,209 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03416,262,916 - 16,298,199 (-)NCBIUU_Cfam_GSD_1.0
Lamp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405602112,825,785 - 112,855,416 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936566365,326 - 394,985 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LAMP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.113121,081,717 - 121,117,660 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213130,583,899 - 130,620,047 (+)NCBISscrofa10.2Sscrofa10.2susScr3
LAMP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,245,146 - 6,285,481 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606315,057,337 - 15,088,451 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lamp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473073,264,110 - 73,298,951 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lamp3
772 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:250
Count of miRNA genes:167
Interacting mature miRNAs:185
Transcripts:ENSRNOT00000034498
Prediction methods:Microtar, Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112767241082846715Rat
1300110Stl7Serum triglyceride level QTL 74.64blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)112952841882566702Rat
1300135Rf19Renal function QTL 193.38blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)114094618882566702Rat
2312566Glom20Glomerulus QTL 203.60.001kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)114428575982566702Rat
1581565Pur10Proteinuria QTL 100.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
1581572Uae35Urinary albumin excretion QTL 350.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)114480331882846466Rat
724561Plsm4Polydactyly-luxate syndrome (PLS) morphotypes QTL 40.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)115445753486241447Rat
4889521Gluco62Glucose level QTL 622.820.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)115513672982993457Rat
7411658Foco27Food consumption QTL 2716.20.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)115635142486241447Rat
631506Bp104Blood pressure QTL 1042.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)115980279482566545Rat
70208Niddm22Non-insulin dependent diabetes mellitus QTL 223.61blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)115980279482566553Rat
10058954Gmadr7Adrenal mass QTL 72.490.0049adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)116034659086241447Rat
1549848Bvd6Brain ventricular dilatation QTL 63.10.0001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116611332182169223Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)116642214886241447Rat
1354593Stl12Serum triglyceride level QTL 123.36blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)116642214886241447Rat
1354656Bvd3Brain ventricular dilatation QTL 33.640.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)116944607082846715Rat
10450831Scl80Serum cholesterol level QTL 804.70.01blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)117695713183051965Rat

Markers in Region
RH131398  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21181,221,603 - 81,221,787 (+)MAPPERmRatBN7.2
Rnor_6.01185,000,472 - 85,000,655NCBIRnor6.0
Rnor_5.01188,058,413 - 88,058,596UniSTSRnor5.0
RGSC_v3.41183,476,433 - 83,476,616UniSTSRGSC3.4
Celera1180,056,130 - 80,056,313UniSTS
RH 3.4 Map11687.1UniSTS
Cytogenetic Map11q23UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 7 11
Low 2 8 1 16 1 2 2 17 7 2
Below cutoff 1 20 14 7 1 7 6 7 56 8 14 6

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001012015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017597968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270462 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270468 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000034498   ⟹   ENSRNOP00000038456
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,193,649 - 81,221,784 (+)Ensembl
Rnor_6.0 Ensembl1184,972,132 - 85,000,681 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108731   ⟹   ENSRNOP00000087228
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1181,198,336 - 81,221,784 (+)Ensembl
RefSeq Acc Id: NM_001012015   ⟹   NP_001012015
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,698,022 - 94,726,164 (+)NCBI
mRatBN7.21181,193,649 - 81,221,793 (+)NCBI
Rnor_6.01184,972,174 - 85,000,661 (+)NCBI
Rnor_5.01187,990,643 - 88,058,602 (+)NCBI
RGSC_v3.41183,449,326 - 83,476,622 (+)RGD
Celera1180,028,176 - 80,056,319 (+)RGD
Sequence:
RefSeq Acc Id: XM_039088271   ⟹   XP_038944199
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,657,817 - 94,726,451 (+)NCBI
mRatBN7.21181,153,491 - 81,224,643 (+)NCBI
RefSeq Acc Id: XM_039088272   ⟹   XP_038944200
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,657,817 - 94,726,451 (+)NCBI
mRatBN7.21181,153,522 - 81,224,643 (+)NCBI
RefSeq Acc Id: XM_039088273   ⟹   XP_038944201
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,697,969 - 94,726,451 (+)NCBI
mRatBN7.21181,193,596 - 81,224,643 (+)NCBI
RefSeq Acc Id: XM_063270462   ⟹   XP_063126532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,657,817 - 94,726,451 (+)NCBI
RefSeq Acc Id: XM_063270463   ⟹   XP_063126533
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,657,817 - 94,726,451 (+)NCBI
RefSeq Acc Id: XM_063270464   ⟹   XP_063126534
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,657,817 - 94,726,451 (+)NCBI
RefSeq Acc Id: XM_063270465   ⟹   XP_063126535
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,657,817 - 94,726,451 (+)NCBI
RefSeq Acc Id: XM_063270466   ⟹   XP_063126536
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,657,817 - 94,726,451 (+)NCBI
RefSeq Acc Id: XM_063270467   ⟹   XP_063126537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,657,817 - 94,726,451 (+)NCBI
RefSeq Acc Id: XM_063270468   ⟹   XP_063126538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81194,693,652 - 94,726,451 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001012015   ⟸   NM_001012015
- Peptide Label: precursor
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot),   A0A8I6A5E6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000038456   ⟸   ENSRNOT00000034498
RefSeq Acc Id: XP_038944199   ⟸   XM_039088271
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot),   A0A8I6A5E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944200   ⟸   XM_039088272
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot),   A0A8I6A5E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944201   ⟸   XM_039088273
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot),   A0A8I6A5E6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087228   ⟸   ENSRNOT00000108731
RefSeq Acc Id: XP_063126535   ⟸   XM_063270465
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126537   ⟸   XM_063270467
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126532   ⟸   XM_063270462
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126533   ⟸   XM_063270463
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126534   ⟸   XM_063270464
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126536   ⟸   XM_063270466
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_063126538   ⟸   XM_063270468
- Peptide Label: isoform X1
- UniProtKB: Q5XI99 (UniProtKB/Swiss-Prot)
Protein Domains
Lysosome-associated membrane glycoprotein 2-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XI99-F1-model_v2 AlphaFold Q5XI99 1-408 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698287
Promoter ID:EPDNEW_R8812
Type:multiple initiation site
Name:Lamp3_1
Description:lysosomal-associated membrane protein 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01184,972,144 - 84,972,204EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307928 AgrOrtholog
BioCyc Gene G2FUF-20698 BioCyc
Ensembl Genes ENSRNOG00000022792 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000034498 ENTREZGENE
  ENSRNOT00000034498.6 UniProtKB/Swiss-Prot
  ENSRNOT00000108731.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.160.110 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7097568 IMAGE-MGC_LOAD
InterPro Lamp2-like_luminal UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lysosome-assoc_membr_glycop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:303801 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94767 IMAGE-MGC_LOAD
NCBI Gene 303801 ENTREZGENE
PANTHER LYSOSOME-ASSOCIATED MEMBRANE GLYCOPROTEIN 3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Lamp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Lamp3 PhenoGen
PRINTS LYSASSOCTDMP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE LAMP_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000022792 RatGTEx
UniProt A0A8I6A5E6 ENTREZGENE, UniProtKB/TrEMBL
  LAMP3_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Lamp3  lysosomal-associated membrane protein 3  Lamp3_predicted  lysosomal-associated membrane protein 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Lamp3_predicted  lysosomal-associated membrane protein 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED