Aste1 (asteroid homolog 1) - Rat Genome Database

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Gene: Aste1 (asteroid homolog 1) Rattus norvegicus
Analyze
Symbol: Aste1
Name: asteroid homolog 1
RGD ID: 1304643
Description: Predicted to enable nuclease activity. Human ortholog(s) of this gene implicated in Lynch syndrome and mismatch repair cancer syndrome. Orthologous to human ASTE1 (asteroid homolog 1); INTERACTS WITH 17beta-estradiol; benzo[a]pyrene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: asteroid homolog 1 (Drosophila); LOC363130; RGD1304643; similar to asteroid CG4426-PA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,905,349 - 114,923,775 (+)NCBIGRCr8
mRatBN7.28106,026,570 - 106,044,694 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8106,026,515 - 106,044,430 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8111,655,122 - 111,665,629 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,854,373 - 109,864,880 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,697,077 - 107,707,584 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,936,991 - 113,954,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,936,991 - 113,954,832 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,322,462 - 113,342,413 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,501,422 - 110,516,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18110,519,628 - 110,528,378 (+)NCBI
Celera8105,359,298 - 105,369,824 (+)NCBICelera
Cytogenetic Map8q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:12477932  


Genomics

Comparative Map Data
Aste1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88114,905,349 - 114,923,775 (+)NCBIGRCr8
mRatBN7.28106,026,570 - 106,044,694 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8106,026,515 - 106,044,430 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8111,655,122 - 111,665,629 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08109,854,373 - 109,864,880 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08107,697,077 - 107,707,584 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08113,936,991 - 113,954,833 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8113,936,991 - 113,954,832 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08113,322,462 - 113,342,413 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48110,501,422 - 110,516,965 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18110,519,628 - 110,528,378 (+)NCBI
Celera8105,359,298 - 105,369,824 (+)NCBICelera
Cytogenetic Map8q32NCBI
ASTE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383131,013,875 - 131,026,825 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3131,013,875 - 131,027,649 (-)EnsemblGRCh38hg38GRCh38
GRCh373130,732,719 - 130,745,669 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363132,215,411 - 132,228,336 (-)NCBINCBI36Build 36hg18NCBI36
Celera3129,157,968 - 129,170,892 (-)NCBICelera
Cytogenetic Map3q22.1NCBI
HuRef3128,116,859 - 128,129,780 (-)NCBIHuRef
CHM1_13130,696,245 - 130,709,170 (-)NCBICHM1_1
T2T-CHM13v2.03133,757,625 - 133,770,598 (-)NCBIT2T-CHM13v2.0
Aste1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399105,272,533 - 105,285,497 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9105,272,591 - 105,289,428 (+)EnsemblGRCm39 Ensembl
GRCm389105,395,294 - 105,408,299 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9105,395,392 - 105,412,229 (+)EnsemblGRCm38mm10GRCm38
MGSCv379105,297,722 - 105,308,088 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369105,253,622 - 105,263,561 (+)NCBIMGSCv36mm8
Celera9104,992,887 - 105,003,207 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map956.61NCBI
Aste1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555017,373,713 - 7,383,092 (+)NCBIChiLan1.0ChiLan1.0
ASTE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22128,972,825 - 128,983,442 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13128,977,552 - 128,987,990 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03128,098,219 - 128,111,196 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13135,420,860 - 135,433,827 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3135,421,044 - 135,432,284 (-)Ensemblpanpan1.1panPan2
ASTE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12328,233,165 - 28,244,036 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2328,231,032 - 28,243,768 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2328,205,872 - 28,216,831 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02328,740,377 - 28,751,279 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12328,436,690 - 28,447,583 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02328,495,397 - 28,506,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02328,745,248 - 28,756,015 (-)NCBIUU_Cfam_GSD_1.0
Aste1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560267,711,919 - 67,723,819 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365294,470,347 - 4,484,590 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365294,472,157 - 4,484,319 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ASTE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl131,435,678 - 1,449,855 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1131,435,714 - 1,457,733 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2131,093,040 - 1,113,028 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ASTE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11559,178,704 - 59,186,556 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604132,196,726 - 32,205,222 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aste1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247306,998,274 - 7,008,828 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247306,998,194 - 7,010,284 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Aste1
123 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:91
Count of miRNA genes:76
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000017743
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61437Cia6Collagen induced arthritis QTL 6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)882460758122812818Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)absolute change in systolic blood pressure (CMO:0000607)846531639119088626Rat
70197BpQTLcluster8Blood pressure QTL cluster 83.482arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)846531639119088626Rat
631210Bw3Body weight QTL35.9mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)869349194112783834Rat
631217Activ1Activity QTL 115.9voluntary movement trait (VT:0003491)number of photobeam interruptions in an experimental apparatus (CMO:0001517)8102370617108923645Rat
724539Cm19Cardiac mass QTL 192.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)8100149864120994388Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
631653Bp125Blood pressure QTL 1253.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)866142385111142385Rat
738011Anxrr9Anxiety related response QTL 96.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)893535351123900184Rat
738014Anxrr15Anxiety related response QTL 153.60.005locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)895718998123900184Rat
1300171Bp184Blood pressure QTL 1843.66arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)870513503118219066Rat
1549909Stresp11Stress response QTL 116.830.0019stress-related behavior trait (VT:0010451)number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)873473045118473045Rat
1554321Bmd3Bone mineral density QTL 37.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)840952565123900184Rat
1358893Bp263Blood pressure QTL 2635.01arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358903Bp252Blood pressure QTL 25270.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)893965141123900184Rat
1358912Bw51Body weight QTL 512.95body mass (VT:0001259)body weight (CMO:0000012)851351728107062046Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2303171Bp331Blood pressure QTL 3315.570.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)861290298119084929Rat
2300181Bmd55Bone mineral density QTL 555.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)876468691121468691Rat
2300182Bmd56Bone mineral density QTL 565.4femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)895718998123900184Rat
2313400Anxrr25Anxiety related response QTL 25aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)889265192114019816Rat
8694446Bw170Body weight QTL 17012.070.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)871888757116888757Rat
9590292Uminl3Urine mineral level QTL 33.620.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)871888757116888757Rat
8694200Abfw4Abdominal fat weight QTL 49.070.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)871888757116888757Rat
8694392Bw161Body weight QTL 1618.060.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)871888757116888757Rat

Markers in Region
AV006403  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28106,036,772 - 106,036,898 (+)MAPPERmRatBN7.2
Rnor_6.08113,947,194 - 113,947,319NCBIRnor6.0
Rnor_5.08113,337,344 - 113,337,469UniSTSRnor5.0
Rnor_5.08113,332,731 - 113,332,856UniSTSRnor5.0
RGSC_v3.48110,508,728 - 110,508,853UniSTSRGSC3.4
Celera8105,369,500 - 105,369,625UniSTS
Cytogenetic Map8q32UniSTS
RH131266  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28106,043,610 - 106,043,793 (+)MAPPERmRatBN7.2
Rnor_6.08113,954,013 - 113,954,195NCBIRnor6.0
Rnor_5.08113,341,131 - 113,341,313UniSTSRnor5.0
RGSC_v3.48110,516,146 - 110,516,328UniSTSRGSC3.4
Celera8105,376,337 - 105,376,519UniSTS
RH 3.4 Map81150.5UniSTS
Cytogenetic Map8q32UniSTS
BF390084  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.28106,034,833 - 106,034,986 (+)MAPPERmRatBN7.2
Rnor_6.08113,945,255 - 113,945,407NCBIRnor6.0
Rnor_5.08113,330,792 - 113,330,944UniSTSRnor5.0
RGSC_v3.48110,506,791 - 110,506,943UniSTSRGSC3.4
Celera8105,367,562 - 105,367,714UniSTS
RH 3.4 Map81152.7UniSTS
Cytogenetic Map8q32UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 6 11 11 9
Low 3 43 51 41 13 41 8 11 63 35 30 2 8
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001040156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006243675 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008766548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039081782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265812 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265817 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC083913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ193960 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000017743   ⟹   ENSRNOP00000017743
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8106,028,308 - 106,037,091 (+)Ensembl
Rnor_6.0 Ensembl8113,936,991 - 113,947,512 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000065794   ⟹   ENSRNOP00000074497
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8106,026,570 - 106,044,430 (+)Ensembl
Rnor_6.0 Ensembl8113,938,626 - 113,953,917 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000079562   ⟹   ENSRNOP00000070732
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8106,029,465 - 106,044,430 (+)Ensembl
Rnor_6.0 Ensembl8113,939,886 - 113,954,832 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102495   ⟹   ENSRNOP00000091984
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl8106,026,515 - 106,037,091 (+)Ensembl
RefSeq Acc Id: NM_001040156   ⟹   NP_001035246
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,905,349 - 114,915,876 (+)NCBI
mRatBN7.28106,026,570 - 106,037,097 (+)NCBI
Rnor_6.08113,936,991 - 113,947,518 (+)NCBI
Rnor_5.08113,322,462 - 113,342,413 (+)NCBI
RGSC_v3.48110,501,422 - 110,516,965 (+)RGD
Celera8105,359,298 - 105,369,824 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039081782   ⟹   XP_038937710
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,906,996 - 114,913,834 (+)NCBI
mRatBN7.28106,026,656 - 106,035,055 (+)NCBI
RefSeq Acc Id: XM_063265809   ⟹   XP_063121879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,906,996 - 114,923,775 (+)NCBI
RefSeq Acc Id: XM_063265810   ⟹   XP_063121880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,906,996 - 114,913,834 (+)NCBI
RefSeq Acc Id: XM_063265811   ⟹   XP_063121881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,906,996 - 114,913,834 (+)NCBI
RefSeq Acc Id: XM_063265812   ⟹   XP_063121882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,906,996 - 114,915,766 (+)NCBI
RefSeq Acc Id: XM_063265813   ⟹   XP_063121883
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,907,003 - 114,915,766 (+)NCBI
RefSeq Acc Id: XM_063265814   ⟹   XP_063121884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,906,996 - 114,923,775 (+)NCBI
RefSeq Acc Id: XM_063265815   ⟹   XP_063121885
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,906,999 - 114,915,766 (+)NCBI
RefSeq Acc Id: XM_063265817   ⟹   XP_063121887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr88114,907,087 - 114,915,766 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001035246   ⟸   NM_001040156
- UniProtKB: E9PU85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070732   ⟸   ENSRNOT00000079562
RefSeq Acc Id: ENSRNOP00000074497   ⟸   ENSRNOT00000065794
RefSeq Acc Id: ENSRNOP00000017743   ⟸   ENSRNOT00000017743
RefSeq Acc Id: XP_038937710   ⟸   XM_039081782
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000091984   ⟸   ENSRNOT00000102495
RefSeq Acc Id: XP_063121879   ⟸   XM_063265809
- Peptide Label: isoform X1
- UniProtKB: A0A0G2K873 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121884   ⟸   XM_063265814
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063121882   ⟸   XM_063265812
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121880   ⟸   XM_063265810
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121881   ⟸   XM_063265811
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063121885   ⟸   XM_063265815
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AEP3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063121883   ⟸   XM_063265813
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063121887   ⟸   XM_063265817
- Peptide Label: isoform X9
Protein Domains
XPG N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9PU85-F1-model_v2 AlphaFold E9PU85 1-672 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304643 AgrOrtholog
BioCyc Gene G2FUF-29273 BioCyc
Ensembl Genes ENSRNOG00000013059 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017743.6 UniProtKB/TrEMBL
  ENSRNOT00000065794 ENTREZGENE
  ENSRNOT00000065794.4 UniProtKB/TrEMBL
  ENSRNOT00000079562.2 UniProtKB/TrEMBL
  ENSRNOT00000102495.1 UniProtKB/TrEMBL
Gene3D-CATH 5'-nuclease UniProtKB/TrEMBL
InterPro Asteroid UniProtKB/TrEMBL
  PIN_domain-like UniProtKB/TrEMBL
  XPG_DNA_repair_N UniProtKB/TrEMBL
NCBI Gene 363130 ENTREZGENE
PANTHER PROTEIN ASTEROID HOMOLOG 1 UniProtKB/TrEMBL
  PTHR15665 UniProtKB/TrEMBL
Pfam XPG_N UniProtKB/TrEMBL
PhenoGen Aste1 PhenoGen
RatGTEx ENSRNOG00000013059 RatGTEx
Superfamily-SCOP SSF88723 UniProtKB/TrEMBL
UniProt A0A0G2K873 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AEP3 ENTREZGENE, UniProtKB/TrEMBL
  A6I2N2_RAT UniProtKB/TrEMBL
  E9PU85 ENTREZGENE, UniProtKB/TrEMBL
  Q5XHY6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-06-12 Aste1  asteroid homolog 1  Aste1  asteroid homolog 1 (Drosophila)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Aste1  asteroid homolog 1 (Drosophila)  RGD1304643  similar to asteroid CG4426-PA  Symbol and Name updated 1299863 APPROVED
2005-12-06 RGD1304643  similar to asteroid CG4426-PA  RGD1304643_predicted  similar to asteroid CG4426-PA (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1304643_predicted  similar to asteroid CG4426-PA (predicted)  LOC363130_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC363130_predicted  similar to asteroid CG4426-PA (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL