Rpl13a (ribosomal protein L13A) - Rat Genome Database

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Gene: Rpl13a (ribosomal protein L13A) Rattus norvegicus
Analyze
Symbol: Rpl13a
Name: ribosomal protein L13A
RGD ID: 628697
Description: Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Involved in cellular response to UV-B; cellular response to cAMP; and cellular response to gamma radiation. Located in ribosome. Part of cytosolic large ribosomal subunit. Orthologous to human RPL13A (ribosomal protein L13a); PARTICIPATES IN ribosome biogenesis pathway; translation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aldehydo-D-glucose; ammonium chloride.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 60S ribosomal protein L13a; large ribosomal subunit protein uL13; neuroprotective protein 11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,746,223 - 104,748,975 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,746,223 - 104,748,914 (-)EnsemblGRCr8
mRatBN7.2195,609,374 - 95,612,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,609,370 - 95,620,463 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1100,995,152 - 100,997,842 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,467,819 - 109,470,509 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,758,226 - 102,760,916 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,120,325 - 101,123,401 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,120,325 - 101,123,402 (-)Ensemblrn6Rnor6.0
Rnor_5.01102,186,220 - 102,188,910 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4195,600,814 - 95,603,504 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,868,177 - 89,870,867 (-)NCBICelera
RGSC_v3.1195,678,924 - 95,681,616 (-)NCBI
Cytogenetic Map1q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3'-diindolylmethane  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
actinomycin D  (ISO)
aldehydo-D-glucose  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
Aroclor 1254  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol AF  (ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
cadmium atom  (ISO)
camptothecin  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
carbonyl cyanide p-trifluoromethoxyphenylhydrazone  (ISO)
chlorohydrocarbon  (EXP)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
clobetasol  (ISO)
clofibric acid  (EXP)
crocidolite asbestos  (ISO)
cylindrospermopsin  (ISO)
D-glucose  (EXP)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
dorsomorphin  (ISO)
ethanol  (ISO)
Evodiamine  (ISO)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
glucose  (EXP)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
N-nitrosodiethylamine  (EXP)
nimesulide  (EXP)
nitrates  (ISO)
Nutlin-3  (ISO)
ochratoxin A  (ISO)
ozone  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
PhIP  (EXP)
picoxystrobin  (ISO)
propiconazole  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (EXP,ISO)
titanium dioxide  (ISO)
triadimefon  (ISO)
trichloroethene  (EXP)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Structures of the human and Drosophila 80S ribosome. Anger AM, etal., Nature. 2013 May 2;497(7447):80-5. doi: 10.1038/nature12104.
2. A leucine zipper-like motif and a basic region-leucine zipper-like element in rat ribosomal protein L13a. Identification of the tum- transplantation antigen P198. Chan YL, etal., J Biol Chem 1994 Feb 25;269(8):5589-94.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Selective high-efficiency cross-linking of mammalian ribosomal proteins with cleavable thiol-directed heterobifunctional reagents: identification and binding directions of major protein complexes. Hultin T Biochim Biophys Acta. 1986 Aug 15;872(3):226-35.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Comprehensive gene review and curation RGD comprehensive gene curation
8. UVB and gamma-radiation induce the expression of mRNAs encoding the ribosomal subunit L13A in rat keratinocytes. Shahmolky N, etal., Photochem Photobiol. 1999 Sep;70(3):341-7.
Additional References at PubMed
PMID:12477932   PMID:12962325   PMID:14567916   PMID:15479637   PMID:16791210   PMID:17218275   PMID:18809582   PMID:19946888   PMID:20716364   PMID:21124846   PMID:21423176   PMID:21630459  
PMID:22658674   PMID:22871113   PMID:23071094   PMID:23460747   PMID:28192165   PMID:30053369  


Genomics

Comparative Map Data
Rpl13a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81104,746,223 - 104,748,975 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1104,746,223 - 104,748,914 (-)EnsemblGRCr8
mRatBN7.2195,609,374 - 95,612,557 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl195,609,370 - 95,620,463 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1100,995,152 - 100,997,842 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01109,467,819 - 109,470,509 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01102,758,226 - 102,760,916 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01101,120,325 - 101,123,401 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1101,120,325 - 101,123,402 (-)Ensemblrn6Rnor6.0
Rnor_5.01102,186,220 - 102,188,910 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4195,600,814 - 95,603,504 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera189,868,177 - 89,870,867 (-)NCBICelera
RGSC_v3.1195,678,924 - 95,681,616 (-)NCBI
Cytogenetic Map1q22NCBI
RPL13A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381949,487,608 - 49,492,308 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1949,487,510 - 49,493,057 (+)Ensemblhg38GRCh38
GRCh371949,990,865 - 49,995,565 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361954,682,677 - 54,687,377 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341954,682,676 - 54,687,374NCBI
Celera1946,860,188 - 46,864,887 (+)NCBICelera
Cytogenetic Map19q13.33NCBI
HuRef1946,368,350 - 46,373,103 (+)NCBIHuRef
CHM1_11949,992,085 - 49,997,349 (+)NCBICHM1_1
T2T-CHM13v2.01952,487,574 - 52,492,273 (+)NCBIT2T-CHM13v2.0
Rpl13a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39744,774,987 - 44,778,169 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl744,774,982 - 44,778,185 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38745,125,563 - 45,128,745 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl745,125,558 - 45,128,761 (-)Ensemblmm10GRCm38
MGSCv37752,381,146 - 52,384,105 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36744,993,818 - 44,996,777 (-)NCBIMGSCv36mm8
Celera740,578,868 - 40,581,827 (-)NCBICelera
Cytogenetic Map7B3NCBI
cM Map729.14NCBI
Rpl13a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555591,358,486 - 1,362,663 (-)Ensembl
ChiLan1.0NW_0049555591,358,479 - 1,362,663 (-)NCBIChiLan1.0ChiLan1.0
RPL13A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22055,602,155 - 55,607,523 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11957,523,611 - 57,527,867 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01946,485,729 - 46,504,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11955,423,867 - 55,428,598 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1955,423,866 - 55,428,598 (+)EnsemblpanPan2panpan1.1
RPL13A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11107,010,190 - 107,014,267 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1107,010,190 - 107,014,267 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1106,593,464 - 106,597,541 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01107,530,251 - 107,534,330 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1107,530,251 - 107,534,330 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11107,203,301 - 107,207,380 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01106,845,354 - 106,849,436 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01107,686,472 - 107,690,551 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rpl13a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934921,734,487 - 21,738,006 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366643,352,514 - 3,356,895 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366643,352,535 - 3,356,196 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPL13A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl654,551,533 - 54,561,489 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1654,551,772 - 54,568,752 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2650,280,484 - 50,297,722 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPL13A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1642,666,186 - 42,671,018 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607322,595,799 - 22,600,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rpl13a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248324,727,899 - 4,732,367 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248324,728,298 - 4,732,397 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rpl13a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12154,415,381 - 154,418,482 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rpl13a
28 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:48
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000027976
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582234Gluco18Glucose level QTL 183.40.0003blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)187889942132889942Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)151941022208479811Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1102780511182384005Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)151940904168768703Rat
2300324Fetw1Fetal weight QTL 112.10.005fetal growth trait (VT:0004201)fetal body weight (CMO:0002080)192963855109494029Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)1101228864146228864Rat
1331800Scl25Serum cholesterol level QTL 253.013blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)187785026142582336Rat
7421628Bp361Blood pressure QTL 3610.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)183019780128019780Rat
631495Bp96Blood pressure QTL 964.52arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)166404680111404680Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2298545Neuinf8Neuroinflammation QTL 84.6nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)166009857160501508Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)193903998191260518Rat
1302788Scl19Serum cholesterol QTL 194.60.001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)166400974132889942Rat
1549903Bp267Blood pressure QTL 267arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)184107164115183752Rat
2313083Bmd74Bone mineral density QTL 7440.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)191302413136302413Rat
2313402Anxrr24Anxiety related response QTL 24aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)151511344153680016Rat
724567Tcas6Tongue tumor susceptibility QTL 66.85tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)1102359314153680016Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)199645382182701046Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)199645382221502378Rat
1358192Ept13Estrogen-induced pituitary tumorigenesis QTL 133.4pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)186622262131622262Rat
2300164Bmd44Bone mineral density QTL 445.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)166077886111077886Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1103779152223964440Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)198879955208479939Rat
738022Anxrr13Anxiety related response QTL 134.60.00039locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)192683681137683681Rat
152025249Scl82Serum cholesterol level QTL 824.77blood cholesterol amount (VT:0000180)152891222109116986Rat
10054135Gmadr2Adrenal mass QTL 21.970.0129adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)186993904131993904Rat
7411712Strs4Sensitivity to stroke QTL 48.7cerebrum integrity trait (VT:0010549)percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)187558587132558587Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)192683681137683681Rat
737977Bp160Blood pressure QTL 1600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)197582336142582336Rat
2293142Bp314Blood pressure QTL 314arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1101594089146594089Rat
61433Cia2Collagen induced arthritis QTL 25joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1100345976145345976Rat
724529Cm16Cardiac mass QTL 162.7heart mass (VT:0007028)calculated heart weight (CMO:0000073)196717367160111531Rat

Markers in Region
RH134015  
Rat AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
13 1 56 146 64 60 48 73 48 6 282 151 11 133 70 81 12 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_173340 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005487745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC099450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EU000472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ218219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ220858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229596 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ232992 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ233205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC207277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HC301871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X68282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000027976   ⟹   ENSRNOP00000027976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,746,223 - 104,748,914 (-)Ensembl
mRatBN7.2 Ensembl195,609,370 - 95,612,459 (-)Ensembl
Rnor_6.0 Ensembl1101,120,325 - 101,123,402 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000082283   ⟹   ENSRNOP00000073852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,615,057 - 95,620,243 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093139
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,121,040 - 101,123,398 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093210   ⟹   ENSRNOP00000076088
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,609,761 - 95,620,243 (-)Ensembl
Rnor_6.0 Ensembl1101,120,692 - 101,123,399 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,121,014 - 101,121,821 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093433
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,120,711 - 101,122,240 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093443   ⟹   ENSRNOP00000090368
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,613,528 - 95,620,320 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093498   ⟹   ENSRNOP00000076117
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,613,525 - 95,620,463 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093537
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,120,778 - 101,123,375 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093559   ⟹   ENSRNOP00000076314
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1104,746,224 - 104,747,871 (-)Ensembl
mRatBN7.2 Ensembl195,609,761 - 95,620,243 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093589
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,122,650 - 101,123,397 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093642
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1101,121,562 - 101,122,298 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000093729   ⟹   ENSRNOP00000076296
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl195,615,057 - 95,620,463 (-)Ensembl
RefSeq Acc Id: NM_173340   ⟹   NP_775462
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,746,223 - 104,748,913 (-)NCBI
mRatBN7.2195,609,760 - 95,612,450 (-)NCBI
Rnor_6.01101,120,711 - 101,123,401 (-)NCBI
Rnor_5.01102,186,220 - 102,188,910 (-)NCBI
RGSC_v3.4195,600,814 - 95,603,504 (-)RGD
Celera189,868,177 - 89,870,867 (-)RGD
Sequence:
RefSeq Acc Id: XR_005487745
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81104,746,223 - 104,748,975 (-)NCBI
mRatBN7.2195,609,374 - 95,612,557 (-)NCBI
RefSeq Acc Id: NP_775462   ⟸   NM_173340
- UniProtKB: P35427 (UniProtKB/Swiss-Prot),   Q5RK10 (UniProtKB/TrEMBL),   A6JAX5 (UniProtKB/TrEMBL),   B3SVE8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000076088   ⟸   ENSRNOT00000093210
Ensembl Acc Id: ENSRNOP00000027976   ⟸   ENSRNOT00000027976
Ensembl Acc Id: ENSRNOP00000076314   ⟸   ENSRNOT00000093559
Ensembl Acc Id: ENSRNOP00000076117   ⟸   ENSRNOT00000093498
Ensembl Acc Id: ENSRNOP00000076296   ⟸   ENSRNOT00000093729
Ensembl Acc Id: ENSRNOP00000073852   ⟸   ENSRNOT00000082283
Ensembl Acc Id: ENSRNOP00000090368   ⟸   ENSRNOT00000093443

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P35427-F1-model_v2 AlphaFold P35427 1-203 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13690026
Promoter ID:EPDNEW_R550
Type:multiple initiation site
Name:Rpl13a_1
Description:ribosomal protein L13A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01101,123,409 - 101,123,469EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628697 AgrOrtholog
BioCyc Gene G2FUF-59719 BioCyc
Ensembl Genes ENSRNOG00000020618 Ensembl
  ENSRNOG00000062298 Ensembl
  ENSRNOG00000084489 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000027976 ENTREZGENE
Gene3D-CATH 3.90.1180.10 UniProtKB/Swiss-Prot
  6.10.250.3250 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7301486 IMAGE-MGC_LOAD
InterPro Ribosomal_L13 UniProtKB/Swiss-Prot
  Ribosomal_L13_CS UniProtKB/Swiss-Prot
  Ribosomal_L13_euk/arc UniProtKB/Swiss-Prot
  Ribosomal_L13_sf UniProtKB/Swiss-Prot
MGC_CLONE MGC:105295 IMAGE-MGC_LOAD
NCBI Gene 317646 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L13A UniProtKB/Swiss-Prot
  PTHR11545 UniProtKB/Swiss-Prot
Pfam Ribosomal_L13 UniProtKB/Swiss-Prot
PhenoGen Rpl13a PhenoGen
PROSITE RIBOSOMAL_L13 UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000020618 RatGTEx
  ENSRNOG00000062298 RatGTEx
  ENSRNOG00000084489 RatGTEx
Superfamily-SCOP SSF52161 UniProtKB/Swiss-Prot
UniProt A0A0G2K6K8_RAT UniProtKB/TrEMBL
  A0A1W2Q602_RAT UniProtKB/TrEMBL
  A0A1W2Q636_RAT UniProtKB/TrEMBL
  A0A1W2Q6J3_RAT UniProtKB/TrEMBL
  A0A1W2Q6L2_RAT UniProtKB/TrEMBL
  A0ABK0L8I2_RAT UniProtKB/TrEMBL
  A0ABK0LV54_RAT UniProtKB/TrEMBL
  A6JAX5 ENTREZGENE
  A6JAX7_RAT UniProtKB/TrEMBL
  B3SVE8 ENTREZGENE, UniProtKB/TrEMBL
  P35427 ENTREZGENE
  Q5RK10 ENTREZGENE, UniProtKB/TrEMBL
  RL13A_RAT UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Rpl13a  ribosomal protein L13A      Symbol and Name status set to approved 1299863 APPROVED
2003-02-27 Rpl13a  ribosomal protein L13A      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_domains contains an N-terminal leucine zipper-like motif and a potential C-terminal basic region-leucine zipper element 632924